Array 1 317031-318040 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWW010000003.1 Listeria booriae strain FSL L7-0435 NODE_3_length_435646_cov_59.296855, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 317031 30 100.0 34 .............................. ATACGCACAGCTAGTTATTGATGAAACTATTAGA 317095 30 100.0 37 .............................. TCAAAAAAGATTTTTTAGATGTGAACAACTGGTCTCG 317162 30 100.0 36 .............................. CCAACTCTGTACGCTTCATCCACAGCTGCTTTCGCT 317228 30 100.0 36 .............................. TTTTCTTCTGATGTAACCAACTGAATCATCCCTTTT 317294 30 100.0 35 .............................. TTATCTACGCCGTCTTTGTCGGTCATTTTTGATAA 317359 30 100.0 35 .............................. ACTTGATATGCCAATTCATTTTCAGGCAAAGCTTG 317424 30 100.0 35 .............................. TGGGACTGCTCCTCTCCTTCACTTTCAGGTTTTTC 317489 30 100.0 34 .............................. ACAGCAAACGCACCGACCACTAACGTGTGCTTCA 317553 30 100.0 36 .............................. AAAATCTATGTAATCAAATCTTTTGCGACTGAGAAA 317619 30 100.0 35 .............................. TCGTATCTAATTCTCTCATTCCGCTTCCTCCTCTA 317684 30 96.7 35 ...................A.......... ATAGTTTTCCGTCGAAAGCTCTTGAACTAATTTAT 317749 30 100.0 36 .............................. AAGGTTCCTGTTCGTCTGTTTCACTTAAATCTCCTA 317815 30 100.0 35 .............................. TCCGATGGGTACAATCGACCCCATAAACTAGACTG 317880 29 96.7 36 ......................-....... GAATTAAGGTATACGCAAAACGGTTTGGCTGTATGC 317945 30 100.0 37 .............................. ATCCATTTCATGTAATCCTTTGCTTTATCTGCCAATT 318012 29 80.0 0 ..C..............A..-...C..G.C | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 98.3 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : TGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAATAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGGTTGATAAGTGGTGATTGGAAAGCGAGGACCAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGGACAAGGGATTGAGCCTTTTTTCGAAGTTCAGGTTGTAAGGTTAGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGAGTGTTTGAGGTATGATGGGAGTAGGCGTTGATTGGCTACCT # Right flank : CTAGATTGCCCACAGATACAGTGTTTCTATCCATTTTCTATAGAATCAATTATCATTCAACAATCCTCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGAGTTATGGGTGCTAGTATGGTGCGGAATTTGATGACGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATCTGGCATAAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACCGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTAGGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATTGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 328125-329393 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWW010000002.1 Listeria booriae strain FSL L7-0435 NODE_2_length_634241_cov_61.094551, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 328125 30 100.0 35 .............................. AAATTTTCGTTGGCTCGCCTTTCCGCAACTTTTCA 328190 30 100.0 34 .............................. ATCGATTCCATGAGGTTCAATGATTACCGTTTTT 328254 30 100.0 36 .............................. AAAAGATAATCACGCCAATCCAGGCTCGTTTAAAGC 328320 30 100.0 37 .............................. TTGTCACCATTTGGCGCAAAATTGAAGTTGTACGCCC 328387 30 100.0 36 .............................. GTCCGAAAATGGTTATACCAGCATGTTGGCTGCACG 328453 30 100.0 36 .............................. TGGGGAGTTTTGGTCAATCAAAGAGGATATTTTTCT 328519 30 100.0 36 .............................. AAGTCACGACCTAGTGACTCAGCTGATACTGAGCCA 328585 30 100.0 35 .............................. TCACATAAGGGCTACCTGCACCCGGCAAACCTAGT 328650 30 100.0 37 .............................. TTCTCACGATTGAACTTTTGAACGACGCCGCAATTTC 328717 30 100.0 34 .............................. ATCAAAATCTGCTGGCGTAATGGCTAACGCTTCG 328781 30 100.0 36 .............................. CTTGCACAAATGGTTGGCGAATGGTCCTTGAAGAAA 328847 30 100.0 36 .............................. TCGGGCATTCCGCATTGATGGTTTGCATTTGCACCT 328913 30 100.0 35 .............................. CACAGAGGACGCACAGTACATTTTTTCTAGCTTCG 328978 30 100.0 36 .............................. CTTCTCGATTTCATCCAGCCACGTTTTCGAAGCGAC 329044 30 100.0 34 .............................. AGGCTTTTTGCTGACTGTCTAAGCCTTTAACAAG 329108 30 100.0 36 .............................. ATTGCATTTTGTGACGATAGTGAATATGTATATACT GA [329129] 329176 30 90.0 36 ....C............A..G......... ACGTGATCTATGATAATCGATGTTTTACCTGGTCTG 329242 30 100.0 34 .............................. ACACCTGATCCAGACCCTATTTATGATGCCTATT 329306 30 86.7 28 .........C...C...A......A..... TAGGAAAAGGGCGGACTTATACACCCTG Deletion [329364] 329364 30 76.7 0 C........C.....C.AC....CA..... | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 97.7 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACACCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGGTGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAGGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGAAGTTCAGGTTGTAAGGTTAGAGAGCGAGAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : TCAATTTGTTTAGCTACGATTGCTTTGGCAGACAATCTCTGTCTACCAAAGCAATGTTCGTAGCCAATGTGCTCTACCTTCCAGCTCTCACAAAAAATCCTCACGATAATCTTTAACATATTGATCAAACGAAGTAGCCTCACGGTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACATTGGCAAATGCTTTTGGGGTTCCGCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCGGCCACCTCATAATACGTCAATGCTTCTTTCCGGTAATACTATATTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAGATAGCAACGATCTCCCCAATGTCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCTGGTATGAATAAATCATCATGTTTCTGGAT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 52139-51192 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWW010000008.1 Listeria booriae strain FSL L7-0435 NODE_8_length_124478_cov_53.823490, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 52138 30 100.0 35 .............................. ATCGATGCGGATGGCAAACAAGAAAAAGGTTCACT 52073 30 100.0 37 .............................. GTGTTAGATCCTCAATATCGAAAACCGTGTTATTCTC 52006 30 100.0 36 .............................. GTCTTTTCAAACCACGCTTTTGCTAACGTTCGTAAC 51940 30 100.0 35 .............................. GATGCTATCGAAGGTATGCCAACAGTTTTGCCGAT 51875 30 100.0 36 .............................. TGAGAGGAGACAGCATAAAGCCTATTTAAGTGAGTG 51809 30 100.0 34 .............................. TTGCCTGCACAGCATGCAGGATTGGTAACTTACG 51745 30 100.0 35 .............................. CTTTGTTGTTAGTGCTTAGGCTCTTGATGTACTCC 51680 30 100.0 36 .............................. GAAGATGATTTACTCCCATTGCTTGGCTTTTGAGAA 51614 30 100.0 34 .............................. TTGTATAAGGCAAGTCCAAAACTGAAAGGAAGTG 51550 30 93.3 36 AG............................ TCGATTGTTATTTCGTTAGAAAAAACAGCACGCGGC 51484 30 96.7 36 ....................T......... ACGTCTGCTATTTTAGTGTTAACATTTTTAGTGTAA 51418 30 93.3 34 .............C......T......... GTGGTTGTTTCTTTTGTATTCCACGAAGCTTTTT 51354 30 96.7 36 ....................T......... AGGCGTGTGTAACGTGATTGTTGAACTGAAAACAAG 51288 30 96.7 37 ....................T......... GTAGTACCGTCAAGGTTTTTAACAACAATAATTTCTA 51221 30 83.3 0 ....................C..CA...TC | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 97.3 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : TCGACGCTGAGCGCAACATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCCGATATCGTATTAATTGCTGTCGGATTCGCAGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAATGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCATAGGGGGAGAAGGGGGAGGATGGTTTTCGAGAAGTAGAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTTAGAGGGTACCT # Right flank : CCCAAAGAAGGAGAGACACCAAATGGCTATGGAAAAATTAAAACTACAAGTCACCATAGACAGACCTATCGGATTTAAAGACGGCTACGGAAATATATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGCTTACATAATTTCTAAAAATGCAACAACTCCACTCGACACATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATGCCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAACC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //