Array 1 1717227-1714303 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007456.1 Bifidobacterium kashiwanohense PV20-2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1717226 33 100.0 34 ................................. CGTACCGTATCATTCCGATTCCGGAAGACATGTT 1717159 33 100.0 37 ................................. GCATACAGGCGGATGGCCAGAAACAGCGGGTCATCAA 1717089 33 100.0 33 ................................. ACTTGGCGGACGGCGGACTCGCAGGCCGCGACC 1717023 33 100.0 34 ................................. TTCCGCTCATTCGTGGACGAATGGGGGGACTTGA 1716956 33 100.0 33 ................................. TACAAGCATAGGGGTTCGATCACGCCGAACCCG 1716890 33 100.0 33 ................................. CACAATGATGAGCCGCGCGTTACACCGCGAGAC 1716824 33 100.0 35 ................................. CTGCGACGTGGTGACCATTTCACTACCGGTGTCCA 1716756 33 100.0 34 ................................. TGCCAAAGTCACGCCATATCAACGATGACGGCTA 1716689 33 100.0 33 ................................. AGCATGATATTACGTTCGGGAGCTGCTATGTGA 1716623 33 100.0 34 ................................. TGCGTTATCGAATGCAGCTGCCTGAATGGCACTG 1716556 33 100.0 34 ................................. GCGGTGATCGCGTTCGCGGAGATCATGCTGCATG 1716489 33 100.0 34 ................................. AGACCATCATGAGACGGTTCGTCGGGGCCACGGT 1716422 33 100.0 32 ................................. GACCTTGTGGATTGACACCACCGGTGGCGCTA 1716357 33 100.0 35 ................................. AGTCCGAGGATCGTGCTCATGTCCGAACCGCCCAC 1716289 33 100.0 35 ................................. TCCGCTGTGATCGCGTTCGCGGCGATGGTCTTCGC 1716221 33 100.0 32 ................................. ATCAACCGCTACTGCCCGAAGAAGCCGAATGA 1716156 33 100.0 35 ................................. CGGATTGGTCGCCGAATCGCAGGCATTGTACGCGT 1716088 33 100.0 33 ................................. GTGGTGATGATCTTATCCGCGAGGAAAGGCGTG 1716022 33 100.0 36 ................................. GCGCACAACTGTTCGAAACAGGACATTCTAACGGCC 1715953 33 100.0 36 ................................. GCGCACAACTGTTCGAAACAGGACATTCTAACGGCC 1715884 33 100.0 36 ................................. TCATTGCGGTGCGCGGCCAATGCCTGCGCCCACTTG 1715815 33 100.0 35 ................................. CCCGCCGACGTCGCCACAGGCACATGGGACAGCCG 1715747 33 100.0 33 ................................. GTGGTGATGATTTTGTCCGCCAGAAACGGGGTG 1715681 33 100.0 33 ................................. AACCAACCGGTATCAGGTATGCCGTCGAAGGAG 1715615 33 100.0 32 ................................. TATAAGACAACGGCGAATAATTTTTCCGAAAA 1715550 33 100.0 33 ................................. CATGCAGGATGCGACGGCCTCCGTCGTGAGCGA 1715484 33 100.0 37 ................................. CCCTTATAGCTTTTATGAAAACATATTGCAAACACAG 1715414 33 100.0 35 ................................. GTTGTGTTGTGTGGTGTTTGTGTTGTTGTTGGTGT 1715346 33 100.0 34 ................................. CGTGGTAAACAATGGCGGAGCGCTGGCGATGGCG 1715279 33 100.0 35 ................................. ACCGAAGCGGAGATCAAAGCGCGGCGAGCCACGCC 1715211 33 100.0 35 ................................. GCTTGTACGTCAGATGGCACGCCGTGAGATCGGTG 1715143 33 100.0 36 ................................. GTGTCAGTCACGTCGGCACCGCGTGTCGCGGCCATC 1715074 33 100.0 37 ................................. AAAGATGAGTGTGCTCGGCGTGACGTTCCTATGGCGG 1715004 33 100.0 35 ................................. GCGCGTAGCAACCATTGCAGGTATTGGGGTATCAC 1714936 33 100.0 36 ................................. GAGCACGTGTCCCGAGGAATACAGGCTGACCGTCAA 1714867 33 100.0 32 ................................. AGGATGATGGCGACGTGGTTCATGCTTGCCGT 1714802 33 100.0 32 ................................. AGGATGATGGCGACGTGGTTCATGCTTGCCGT 1714737 33 100.0 33 ................................. GTGAGGGCAAGCTGCGGCATCTCCCACAGCCTG 1714671 33 100.0 32 ................................. TAGCACCGCAAGTACTGCCACTGCCAACAAAA 1714606 33 100.0 34 ................................. GTGAAGTCGCTCTCGTGGCTGTTGGTGGATTCGA 1714539 33 100.0 36 ................................. GATGAGATGCACCGTCCACCCTTTTTCGGTCAAAGG 1714470 33 100.0 35 ................................. TGGGATGTGTGTTATGGCGACGGCCATCCGTCGAA 1714402 33 97.0 34 .............T................... TTTTGGACCGTTTGGTCAAGCGAAGCGTGACCGG 1714335 33 93.9 0 ...........T........T............ | ========== ====== ====== ====== ================================= ===================================== ================== 44 33 99.8 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : CAATGCCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCCCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGGTAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGTGTTTGAGTGGGGTGTCCGGTATTCAGAGCGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGGAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGGCATGTTGTTCGTCGTGCCGGCGGTGTTGTTTGATATGCTTAAATTCAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACA # Right flank : GAAAACTCAAGAGTGGACGCGACAGAGACGCGACGGAATGCGACTAGGCGTGATACACCCTCACATCATGCAAGACCGAACCGTCGCCGAGTCGCCAACGTGGCGCGGTGCCCGGCATGGAATTGTCCCGCGCCGTCTGAGTGATCTACAATGGCCTCTAATCCAAGATAGGAGTAGGGTCATGGGATTAAAGGAATTGAGACTGAAACGTGGAATGACGCAACGAGAGCTAGCCGAAAAGGTCGGCATGTCAGGCGGCAACATCTCAGATATCGAGAGCGGTAGGCGCTCTGAGGCTAACCTAACCTTAGCCACTGCGATAAAGCTGTGTGACGCTTTGCGCGTTGCTAATCCACGTAAGCTACTTGATTCTGGCTCTGAATCTTCGGCGGATTGATTGCAATCCGCCGGGGCCGTCGGCGCTCTTTACGGGCGCGATGGCCTACGAAATATTAATGTTCAGCCGATATTATCGGCGTTGTGAAATGAAAGGTGGTGAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //