Array 1 113396-114522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJGU010000004.1 Pseudomonas aeruginosa strain PA0750 NODE_4_length_420745_cov_105.43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113396 29 96.6 32 ............................A GCAGGATTTGGAGTCGGAGCGTTTACCTACAT 113457 29 100.0 32 ............................. GTGAACGATGCGAATCGGGCGGGGGTTTGGTC 113518 29 100.0 32 ............................. GCTTGGTAGATGCCTGGAACAAGTCGGTCAGC 113579 29 100.0 32 ............................. CGCGCTGTCCTCGGCCTGGACTGGACCATCGA 113640 29 100.0 32 ............................. TGGGCGAACGACGGCAGCGTCACCCAGGCGCA 113701 29 100.0 32 ............................. ACAGGGACGTTCTCCGCGAGCTGGCCATCGAC 113762 29 100.0 32 ............................. GCAGAGCGGATTGCTGCCCGCTTTGTCGGCAC 113823 29 100.0 32 ............................. GGGGTGGTAGCACCGGACTCGCGGATCTTGAA 113884 29 100.0 32 ............................. GCGTACATGACTGAGGGAGAGTCCACGGACCT 113945 29 100.0 32 ............................. TCATATAGCTTGTATTTTTCCTTGCTATGAGA 114006 29 100.0 32 ............................. AAAAACGACGGCATTCACTACGCGCGCCAGGC 114067 29 100.0 32 ............................. GCGTTCATTTCCCAGGACGTGGACCAGCTGCG 114128 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 114189 29 100.0 32 ............................. TTCATGAACGGCAGAACGTTGAGCGCCGATTT 114250 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 114311 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 114372 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 114433 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 114494 28 79.3 0 A..........A..C..-.....A....T | C [114498] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACCGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTAATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123695-125433 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJGU010000004.1 Pseudomonas aeruginosa strain PA0750 NODE_4_length_420745_cov_105.43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 123695 29 100.0 32 ............................. GGATTGCTTCGCCCATCTGCCGGGCCTTGCGA 123756 29 100.0 32 ............................. ACCGGATGCAGTCTTAATCCCTTTTTGCGTCG 123817 29 96.6 33 ............................A GTTATGCTGGTGCTGTCATAGATCATGTCGAAC 123879 29 100.0 32 ............................. CTCTACGACGAGAAGTTTGGCCTGTCGCTACT 123940 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 124001 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 124062 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 124123 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 124184 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 124245 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 124306 29 100.0 32 ............................. CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 124367 29 100.0 32 ............................. TCGGCCATCACTGGCAAGGTGCGCGAAGGCGT 124428 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 124489 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 124550 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 124611 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 124672 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 124734 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 124795 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 124856 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 124917 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 124978 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 125039 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 125100 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 125161 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 125222 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 125283 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 125344 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 125405 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGATAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //