Array 1 464-2350 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNGK010000029.1 Bacteroides fragilis strain 1001095H_141210_E11 NODE_29_length_52084_cov_33.3744, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 464 47 93.6 30 ...A......A.............................G...... TTGATAAATGCGAGTACGCAAACAAACTGT 541 47 100.0 30 ............................................... ATTATCAAGATGGCAAAATACAACAATACC 618 47 100.0 30 ............................................... AAACCATTCAGATAACGACGTAGCTGTGTT 695 47 100.0 29 ............................................... TAATCTATGCACGAAACTATCGTCAGTTG 771 47 100.0 30 ............................................... GCAATCGGATATTGGGACGATATCAAGATA 848 47 100.0 29 ............................................... AAGTAACACCATTTGTTTTAACCGGGAAA 924 47 100.0 30 ............................................... TTTATATTTATCTTGAATTGTCTGTTTCCT 1001 47 100.0 30 ............................................... AGGGGTATTCATTGCGTCGGGCGATATGTG 1078 47 100.0 30 ............................................... AATCCGTAGTTCCGGTAAATAAAAGATGAT 1155 47 100.0 30 ............................................... GCCGATCTCGTAGTTGTTGGGGTTAAAGGT 1232 47 100.0 29 ............................................... ATTTACATTTGATTTTGGAAACGGAAGTA 1308 47 97.9 30 .......................................A....... GAAAGAGCAACAGCAGCAGTATGTACACCG 1385 47 100.0 30 ............................................... CCAGAAAGAGTTGCAGTCAAGTCTGAACCA 1462 47 100.0 30 ............................................... TCTCTCGAGTCGTGGAATAATAAGATATGG 1539 47 100.0 30 ............................................... CCTAAACGAGTTCTTGCCGGGTGACACGTA 1616 47 100.0 30 ............................................... CAGATAGTTTTGATCGGCTGTCTGCTTCTT 1693 47 100.0 30 ............................................... AAAAGTTCAGTAGTAGAAGCTACAGGCGTA 1770 47 100.0 29 ............................................... TAACGTGGGCTGATAAGATGGGGTATATT 1846 47 100.0 29 ............................................... TTCAAACAAGCGGTGTTTAACGGTATACC 1922 47 100.0 30 ............................................... ATTAGTCGTGTTGAGAAAGAAAGTGCAGCA 1999 47 100.0 29 ............................................... GACAAAAATATGGCACGCATGACCGAATG 2075 47 100.0 30 ............................................... CCTGTACTTGGTTTTGTTATAGAACGTTCT 2152 47 100.0 29 ............................................... TAAGGTGTACCACCAGAACCAGAAGCACC 2228 47 100.0 29 ............................................... GATGTAACATATGTGTAAACATGATCACG 2304 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 25 47 99.7 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : AAGCTTTTGCTTCTAAAAGACTTGTTCTTTGAAAACAAAAGACTTGATTTAACAGCGTGTTAAATCAAGTAATAGGAAGAGAGGAAACAAAAGGAGAAAAAGAATTGAAGATGAAGACGATAGAGAAACGAGGGAGTATCTGCCAAAAAAAGGATAAGTGCCGGACCGAAAGGGATAGTTGCGATTAGGGCAAGTATGGGGGCAGGGGATTTTAAAAGCAAGGTTGGGAGTGAAAGCAGGAGGAGTTTACTGCTAAAGACCATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGCG # Right flank : CAGATTTTACATAACATATTGTCCTTCAATAAGTTAAGAGTAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTGTTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGGCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTAAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 30739-31412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNGK010000030.1 Bacteroides fragilis strain 1001095H_141210_E11 NODE_30_length_51157_cov_24.5765, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 30739 29 100.0 34 ............................. GAACGAAAAGGCGGGCTGGATTTCAGCGGACTTC 30802 29 100.0 36 ............................. GGAAATGGCGGAAGGATTGGCCGTCAGGGTAACTGA 30867 29 100.0 37 ............................. TTAATCATCACATTGATCTTCTTAATCGCTTCATCAG 30933 29 100.0 34 ............................. CCGAGTACTTGTACATCGTACAGTTTCCCTTGCT 30996 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 31059 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 31124 29 100.0 34 ............................. TACTCTAACTGATTATCAGCTGTAAGTCCGGTTA 31187 29 100.0 35 ............................. AAAAGAGAGCACTTGATGCAAACGAAAAAGAGCAG 31251 29 100.0 37 ............................. GTCCTAAACGAAGGTCAACAAACCAACTTTCATCGTT 31317 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 31383 29 93.1 0 .........................G.C. | A [31407] ========== ====== ====== ====== ============================= ===================================== ================== 11 29 99.4 36 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTTGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGGTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : TAAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGAAATTTTTTCTTCCTTGCTAGCAACATCCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTTGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACATTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCGTGGATAGACGATACGATGGAAGGTATTGTTTTTGACTA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //