Array 1 60-3112 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFUL010000006.1 Clostridium beijerinckii strain DJ076 Ga0423242_06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 60 28 100.0 36 ............................ ACTGTAATCATTTCAGAGATTGGCAAGAAATAATTA 124 28 100.0 37 ............................ ATTACTAAAGGTGAAATGGTGAGTGCTGATGCAGTAA 189 28 100.0 37 ............................ AAGACATTACAAGGCTTGCAAACAGTCACTAATAAAA 254 28 100.0 36 ............................ AGCACTAAGGGAGAACGTAATATGGATCAACAAAGA 318 28 100.0 37 ............................ GAAATTATTTATGAAAATAATGCTGAATTACAGGCTA 383 28 100.0 35 ............................ TGTCAACACCAAAACAACACTATTAAAAAAATAAT 446 28 100.0 36 ............................ AAATATAAATCATAAACAATAAATAAAAACTAACTT 510 28 100.0 37 ............................ GAAGGTAATGATTCAGATGTTAAATTTGGATATGCAG 575 28 100.0 36 ............................ ATATTTCAAACAGTTTTTCCTATAATTGGGCAAATA 639 28 100.0 36 ............................ TGGGAACGTTGGGAAAATATCATAGAAGAATTTAAA 703 28 100.0 37 ............................ ACTATTTTCTCTAAGTTCTTATCATTTGCAGTATCAG 768 28 100.0 36 ............................ CTATAAAAAGTAATCATCTTTCTCTAACTCCTAACT 832 28 100.0 37 ............................ GTTGAAGTAGCGACTAAAGCTTTTCCAAAAGTAGTTG 897 28 100.0 36 ............................ CGTATAAGAGCATTTATTAAATTTATAAAGAATACA 961 28 100.0 36 ............................ TCATATAAAGCAAGAGTGGCAAGGTTAGATTTAATT 1025 28 100.0 37 ............................ ACATTTTTGCAAGGATTGAGTGATTATTTAAGCGATA 1090 28 100.0 37 ............................ ATACATTCAACCTCAGAAACTTTAGCACCAATTGAAA 1155 28 100.0 35 ............................ TCGTAAATTCTTGTAGTACCATCACTAGAGTACTG 1218 28 100.0 36 ............................ CCTTATAATAGCATATCAAGTGCAAGTGCATTATAT 1282 28 100.0 36 ............................ TTGCAAATACTCTTTATTTTGGTTAACTATATTTTC 1346 28 100.0 37 ............................ ACAGGAGAAGAAATTACAGTATTACTTAAAATATCTA 1411 28 100.0 37 ............................ TGATAATGCACAAAGTAGCGTTAAAAACTGTCATTTC 1476 28 100.0 38 ............................ TCTTAAAATCAATTAACTTATTGTATCTAAATTATTTA 1542 28 100.0 36 ............................ TTTAATTTCGTGCATCTATTGTTAATAGATATTAAT 1606 28 100.0 37 ............................ ATATAATATTTAAACTCTTCAATTGTATAAACAGTCT 1671 28 100.0 36 ............................ AAAGGAACATATATCATAGATTGTTTAACGGATCTA 1735 28 100.0 36 ............................ AGTAAGTAATCTAAGCTTACATTGAATAGATCAGCA 1799 28 100.0 36 ............................ GTATTAGATAAATCTTGTGCTTTTAAACCACTTACA 1863 28 100.0 35 ............................ CCTATAACGATACAATCATCTACAACAGCAATTGC 1926 28 100.0 37 ............................ AGAGAATTTCTTTGAATAAGTAAAAAATCTTTTACCA 1991 28 100.0 36 ............................ AATAAAGGGGGAATCCATAACGGAAAAGAATAAGAA 2055 28 100.0 36 ............................ TAAATACCTCCTATTTAGTACCAGTAACAACATAAT 2119 28 100.0 37 ............................ AAAATAGCAGTAACAGCCGAAGTAACATTTTCCATAC 2184 28 100.0 36 ............................ CAAACTATAAAATTAATTAACTATGGAGAATTACCA 2248 28 100.0 37 ............................ GCAAATTCAATAACCGTTAATAAGTCATACACTTCTC 2313 28 100.0 35 ............................ ATGAATATTCAAGAAAACAATCTTCACACAATATA 2376 28 100.0 36 ............................ ACGACAAATAATCAACAGTAACTTTATTACGACGAG 2440 28 100.0 36 ............................ TTTTCTACAAGATATCCCAATATGTCATTAAGAGAA 2504 28 100.0 36 ............................ CCAATCAGAGGATTAAAGAAATGATAAAAGAATCTA 2568 28 100.0 38 ............................ ACTTATAGTTCACGTTCTATATCAAATAATTATTATTA 2634 28 100.0 37 ............................ TTTGATAAGCGTTGAATAGCTTCATTTAAGGTTTCTA GG [2652] 2701 28 100.0 36 ............................ TACTCAGTTTTTAGAGTGGAAGTATGGTAATAAAAC 2765 28 100.0 36 ............................ TAGGCTAAAGTGGCAGGGTTAAACTCGATATATATA 2829 28 100.0 36 ............................ GTGCATATTCTGCATTATACAGACCAGGAACAACTG 2893 28 100.0 36 ............................ CATAAAAGAAAATAAGTTGGATGAAGAAATGAGAGA 2957 28 100.0 35 ............................ GTTAAAGCAAGAGCAATTCAACTTATGATATCTAA 3020 28 100.0 37 ............................ GCAAGAGGTCAACATGTTAAATTTGATGGTGAAATTA 3085 28 96.4 0 .G.......................... | ========== ====== ====== ====== ============================ ====================================== ================== 48 28 99.9 36 GTTTTATCTTAACTAGAGGAATGTAAAT # Left flank : TCTTAACTAGAGGAATGTAAATCTAACGACAGTAGTCATATCAGGAGCAGTTTCTTCGGG # Right flank : TTAATTTTAAGAGCTTATAAATAACCAAGAGTAGTTGCCAAAAATAAAAAATAATAACTAAAGCCAAAGAAAATTTAAATTTAATTGATTTTTATGTTTACAAAATGGAAGAAAAACTTCTTTAAGTATATGTAAAGCAAATGAGTTAGCTAACCTCAAAGGCTTAATTAAAATTATTTTTATATTTTAGGAGGAAAAAATTATGGGTTATTTAGGAATTAACATGTCAGGATCAAGTATACCAGTATATTCTACAAATATTGAGGATAACACAAGAATAGGAAGTTTGGGATACAAAGAACGATTTGCAGTTACAAGCAGTGGACCAATTGCAATAGTTATAAAGTTTGTAAATTCTTCAGGGAGCTGGGTTGATGGTAGATTAGATCCAGATGCTGATATTAGTGATTGGTGTGAATATTTATTTAGATCAAGCGCAATACCAGCTGGATATTTCCGCACTGATAGTACAGTAAGAATGTATGATTCATCAGGAAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTTAACTAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 446558-448611 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFUL010000006.1 Clostridium beijerinckii strain DJ076 Ga0423242_06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 446558 30 100.0 35 .............................. GCAGGTATTGCATTAGCAGCAGTATCAGCGTTAGG 446623 30 100.0 37 .............................. GAATTAAGTCCTGAACAGCAAATGTTTTATGCTAAAC 446690 30 100.0 35 .............................. GGTAAAACCCATGTAAGATGTATATTAAATGATAA 446755 30 100.0 35 .............................. GCTAATAATATAGTCTCTTTTCTGCATCTTCTTCT 446820 30 100.0 34 .............................. TAATTATCTTCCTGAAGGTGGAACAATTAATGAA 446884 30 100.0 34 .............................. ATTGAAACATTACAAAAGGAGATAAAAGAAAGAC 446948 30 100.0 36 .............................. ACTATGAAGTCACCTTCCTCATTTCTTCCTATTGTC 447014 30 100.0 35 .............................. CCCAGCTATAAGACTTATTTTATCAATAATTACTG 447079 30 100.0 36 .............................. TATAATAATACTATAAAGGTGCATTATGGAAAGAAA 447145 30 100.0 36 .............................. TGGCAGAAGGTTTTGGAAAAAAGGCTTAGAGGAAAT 447211 30 100.0 35 .............................. AATAAACTTAATACTATCAAATTTATACCTCCTTG 447276 30 100.0 35 .............................. GCAATTACCCTTAATTCCATTTCTACCCCTCCAAA 447341 30 100.0 34 .............................. GAGTAATGACCATGACCTATTATTCACTGTAGAA 447405 30 100.0 34 .............................. GGAAGCTTAATAGACAAGGATGGAAATGTTGTAA 447469 30 100.0 36 .............................. TGGTGAAGAATTAGGTATTGGAACAATTTCATTTAT 447535 30 100.0 35 .............................. GCTACAGAAAAGTTCTTAAAGCTCTTTTCCGCCTC 447600 30 100.0 36 .............................. ATTATTATTAGTGTTACATCAGTTACAGTAGCCCCT 447666 30 100.0 35 .............................. GGGAGCTGATGTTGTTAGAATTAAAGAACTAATAG 447731 30 100.0 34 .............................. TGGAAGTTCTCTTTAATACAATTAGGTTTTCTTT 447795 30 100.0 37 .............................. CCATAACTGATTATGAAAATAAGAAAGATTTAGTATT 447862 30 100.0 36 .............................. TTAGTCTTATTAAAGAAAAATGGAATTAATTTAGAG 447928 30 100.0 36 .............................. CGCTTTATGAAACTTAAAAGTACACCTTGATAAAAA 447994 30 100.0 36 .............................. CCTAACATACCTTTCTCGAATTTAGCAAAACTTATA 448060 30 100.0 36 .............................. GTGCATTTTGATTGAATCTCATAATTATATAAAGTC 448126 30 100.0 34 .............................. AGTATATGAGCTATATTATATAGATCAAAATGCT 448190 30 100.0 36 .............................. TGAGAAAAGTTGCTCAAAAAGGTGATGTCATATATA 448256 30 100.0 35 .............................. GCAAATGTTATATAAACTTTAATGTAATAACTTCC 448321 30 100.0 34 .............................. GATATAGGTAATGAAATAAGTGATTTTAGAAATG 448385 30 100.0 35 .............................. CAACAGTTACAAATAATGCTACAAACCCCCAAACC 448450 30 100.0 36 .............................. ACTACATTTTCCGAACCTATTAAAATTCTATTTAAA 448516 30 100.0 36 .............................. ACAATAATATCACCAACAGATGCACAATTAGAAGAT 448582 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 32 30 100.0 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : AGACTTTATTCCTTTTAGTTTAAAGGAGGACATGTAATGAGTAAAACAAGCAATTATAATTATGCATTTGTATTTTATGATGTCAATGAAAAAAGAGTACAAAAAGTTTTTAAGGTATGTAAAAAATATTTGTCTCATTTTCAAAAATCAGTCTTTAGAGGTGAAATGTCGCCATCAAAATTAATAAAATTTAAAACTGATTTAAACAAAGTTATTGATAAAAATGAAGATTTTATATGCATAATAAAGCTAATGAATGACAATGTCTTTGGAGAAGAAGTATTAGGAGTAACATCAGGAGTAACTGGCGAAGATCTAATAATATAATTTACCAGGCAAAAAATAATTGATGCAAGAACAAAACTAGATATAATGCTGAGTTACATAAGTATTTCTAGAACATTAAATTTTGGTAGTGGTACTTGGTAAATTTTTGTGAATATGTTACACTAACTACAGTTAGGGCATTATTCTAGTATAAGAATGGGCTTTTTTCTTTG # Right flank : TCATTTCTTTAGCTGTTTTTTCATCTACTCCGTATTGATTAAATAACATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 54-667 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFUL010000003.1 Clostridium beijerinckii strain DJ076 Ga0423242_03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 54 30 100.0 34 .............................. AGCGGTAGTACAACAGGAGACGCTGAATTAATAG 118 30 100.0 36 .............................. ACTATTTCCATATAAATATCCTTAAGTAATATAGTT 184 30 100.0 36 .............................. TGTATATCCTTGATCATATAGTATACAATGTTCAAT 250 30 100.0 35 .............................. ATTTATCTTCAATTTCTTTAAAGAAGTCGATATAA 315 30 100.0 36 .............................. TTTGGTTTTGATTTGACTAAGTATATCGGAGTTGAT 381 30 100.0 34 .............................. ACGCTTCATATACGCTATAATACATAAGTACTCC 445 30 100.0 35 .............................. TGGAGCTTCAGTAAAATATCAAGTTGCCGAAGGTG 510 30 100.0 34 .............................. TCATTTTGAACATAATCATTATCGTTTAAAACAC 574 30 100.0 34 .............................. TATCTGACAATTGCGTATTAACGCTAGCCAACTG 638 30 93.3 0 ........................A....C | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 99.3 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : ACATGAGAGTATTTAAATAGATGGAGAAAAACAAAAAACTAATGAAGAAGGGAG # Right flank : CCAATAACGAACATAAACTTATATAATTTAAGCTCTTGTCAGAAAGTGACAACAAGAGCTTAGCTTTTTTGATTAAATGGATAAATAGAGCCTTATTTCAAAATATTTACGTATTCTATCTATTAATGTATACTTGTATTGAGTACATATTAGATAATATTTTGTTATGAGGGAGTGATAATATGAGTAAATATAGAAGTTCGTACTGTAAAATTTTCATCAACACAGATGAAGAAGAAGAAGTTATATTGAGTTTAATTGAAAAAATAACAATGGGTAGTAAAAAAAGATGGACAATCATCTCGGATTTAATGAAAATAGAATTGATAAACAATGAAGATTTTAGTGAAGAAAAAAGTGTTAAAGAAGAAGACGGTTTTCTATACTCAAAATATTATCTTGGTATTGAGCCTGGAGAAGGTATAAAGGAAGAACAGTATATTACAGGAGTAATAGTCTTGCTGGAAAATCTAAGATCATCAGGATACAAGGTAGTTGCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //