Array 1 157557-158260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRS010000010.1 Nocardia puris strain N-28 NODE_10_length_318153_cov_32.007688, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 157557 30 100.0 31 .............................. GAACCGTTTTGAGCTGGCAGGCCATGAATTG 157618 30 93.3 31 ............................GT CCCACTCCCGCTTCGAGCGGACCGACCGCAG 157679 30 93.3 31 ............................GC CTTGCGCATCGTTGACACCGATGGTCGTGGC 157740 30 93.3 31 ............................TC GACCTCGACGCCCGCAGCGCCTCCCCGGTCC 157801 30 100.0 31 .............................. ACATCTGGACGCGGCCCGAGCGACTGCTCCG 157862 30 96.7 31 ............................G. CGTAGGTCTTCGCGGCGGTATGGATGTCGGC 157923 30 93.3 31 ............................GT ACGGCAACGAGGCCGCCCACGGCGTGCTGCG 157984 30 93.3 31 ............................GA CGACACCGACCGCCTCGTTCGCCCAGCCCGC 158045 30 96.7 31 ............................T. TCTTCGAATGGCTCTAGTGCGAGAAGTGTCC 158106 30 100.0 30 .............................. AGGGCAGTGGCTGAAGACGGAGGGCGCGCG 158166 29 83.3 31 .....-.....AT............G..G. TTCCCGCGTATGCGGAAGGCGCGACAGCGGA 158226 30 86.7 0 .............CT.C..........A.. | A,T,TCG [158246,158248,158251] ========== ====== ====== ====== ============================== =============================== ================== 12 30 94.2 31 GTGCTCCCCACGCACGTGGGGATGGTCCCG # Left flank : CGCACTCGCCCGCGAGGTCGGCCTCACCCCCGACCTCCTCGCCCGCCGTCCCCACGAGGTGAGCGACGGCCAACTCCAGCGCGCCTGCGTCGCGCGCGCCCTCGCCCAGCGCCCCCGCTTCCTCCTCTGCGACGAACCCACCGCCATGCTCGACGCCGCCACCACCGCCGCCATCGCCCGCCTCCTGACCACCCGCGCCACCGCCGGTGACCTCGGCCTTCTCCTGGTGAGCCACGACCGCCCGCTCCTCGACGCCTGCCACGCCCACGTCCACACCCTCACCGCGGGCACCCTCACCACGTGAACGATCCGCCGCACCGCCCCCACCCCACCCCCGGGTACCCTGAACCCGACACGCCTTTCCGCCGGTGCTGAGCAACTGATCCATCGGTGTCTCGGATACGTAACGCCGACGGTCAGGCGTGTCACCTTCACCAACCACCTTCCCGACAGTGGTCGAAAACTTGGTTACCGGCCGGTAGAAGCCCAGGTCAGGAAGT # Right flank : GCCGACGATCCTGAGTGGTCTGCCCTGCATCCGCGCGATCGACAACCTCAGCGCCACGTGCGGAGACCGGGCCCGACATTCGACGGTTCGCGCACGTAAGTCGCTGAGAATACTGTTGTTTCGTAGACCGCCGATCAAATACCCAGCACCCCAACAACTCTCACCGCGTCGTATACCCACCATTGGCGAAGATCGTCTGTCCCGTGATCCATTTCCCGTCGGTGACGAGGAACTCGATCAGCGGGGCGATGTCGGTGATGTCGGTGAGACGCCCGCCGAGGGCCTGGGACTTGTGGAACTCCACGCGCTCCGGAGTCTCCTGCCCGTAGAAGAACGGGGTGTCCATCGGTCCGGGCGCGACGTTGTTCACCGAGATGCCTCGGGATGCGAATTCCTTGGCGGCGGCGCGGGTGAAGTGCTCGACCGGGCTCTTGGCGCCGGCGTAGGTGGAGTACCCGTCGGTGAACGCGGCGAGCAGCGCGGTGAGCACGGTGACGACG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 317598-317932 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRS010000003.1 Nocardia puris strain N-28 NODE_3_length_503262_cov_36.610041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 317598 29 100.0 32 ............................. ACGCGACGCGCTCGGCCTGATCTGCCTGGACC 317659 29 100.0 32 ............................. GCCACCCCGATCACCCTGCTGACCGCCGAGTC 317720 29 93.1 32 ............TG............... CCTGTTGTGTCGGCCTTAATTTCGACGCCGAG 317781 29 93.1 32 ...........C.G............... GCGGCGGCCATGAGTTCTTGGGTGGTCCCCTT 317842 29 89.7 33 ...C....................G...T CGGCGTCATGGGCGCGCTGATCGACCCGCTCGG 317904 29 69.0 0 ...C...AGT.........A....GTT.A | ========== ====== ====== ====== ============================= ================================= ================== 6 29 90.8 32 ATGGTCCCCGCGCATGCGGGGATGAGCCC # Left flank : ACACCTACTTCTCCTCCAAGGAACACCTGGTCGCGGAGATCTTCTGGCGCCGCCTGATCGCCTCCCCCTCGCCCGCCAGCGAGGACCCCGACCCCGTGGTCCGCGTCATCGCCGAACTGCGCGACATCGCCCTGCTCGTCGCCGACGAACAAGAACTCTCCGGCGCCGTCACCAGCGCCCTGCTCGGCCGCGACCCCGACGTCGCCCACCTGCGCGACCGCATCGGCGCCGAAATCCGCAAACGCATCCTGCGCGCCCTCGGCCCCGACCCCGACCCCGACATCGTCGAATCCCTCGAACTGCTCTACGCCGGAGCGTTGGTCCGCGCGGGAATGGGCTACGCGTCGTACGCGGAGATCGCCGACCGGATCGAGAAATCGGCGCTGCTGATCTTACGGTGAGGGGATACGGTGGATGTCGCGTCCGGACGCGATGGCCGTGGTCGGACGAAAGTGAATGAGAATCGGCTCAGCTCTGCGAAAAACCGCAGGTCAAGAAGT # Right flank : ACGATGCCCCCCCAGCCGGGCGGCGCCAAAGTGCCAGGCGGTCAACCATTTGCAGAGTCGCGATCATCGCCGTTGGTGGAATCCGTGCGACTCCGCCCCGTGAGCGGATTCCGAAGTGTTCGTACCGAAATGGATAGTATCGCGAGCGATAGTATCTCTGGCGATACTATCTCCGGCGGTACTATCCATCCCTACCGTGCCTGTAGCACGTGCTCCCCGCGCCGGCGGGGTTGAGCCTGGGCCGCCGAAGTAGTGCCGGCCATCGGCGTCACGCTCCCCGCGCGTGTGGATCTCCGCATCAGCACCTTGCCCTGGTGGTTCGAAACTGCCCGGTGGGCAGTTGTCGCACGCCCGCGATCGCCGTCGACGGTGGGTGGGCGGCGCGGATGCCCGACCAAGCCGCACTTTGGATGGTCGATCTGGGCGGGAACCCGGTCAGGGGTGGACGTTTGTATAGTTGCAGCAACGATGAAGGCCCGGCGTGGGTAGTGGGGGTGAGC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGGTCCCCGCGCATGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 317377-316862 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRS010000004.1 Nocardia puris strain N-28 NODE_4_length_488973_cov_39.552728, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 317376 30 93.3 31 ............................GT CCAGGGCGGCGCGCAGAGACAGGCCCAGATG 317315 30 100.0 31 .............................. CCACGTACATTCGGTCCCGCGACTGCGGCGC 317254 30 93.3 31 ............................TC GGTCCCATCCTGTGATACGAGTCGGATTCGA 317193 30 100.0 31 .............................. CGCAAGCGTTGATCGACGCGAACCCGATACC 317132 30 96.7 31 .............................T CCGAGATCCCCGGCGCGTAAGTGGCCAGCAG 317071 30 96.7 31 ............................G. CCGCCGGGTCGGTGACGGTCGCTTCGGGTTT 317010 30 96.7 31 .............................C TCGTTCCCCCCGGCGACATGTCCGACCCGCT 316949 30 93.3 29 .......................A...T.. CAGTGGTGGTGCCAGAACTCGGGGGTGAA 316890 29 73.3 0 ....-.G...........A.A....CGG.A | ========== ====== ====== ====== ============================== =============================== ================== 9 30 93.7 31 GTGCTCCCCACGCACGTGGGGATGGTCCCG # Left flank : TCGAGGGCGATCATCGCCATCACGCCCGCGTCGGCCTGCACACCGCCCGCCTCGGTGTCGCCCTCCCACGCGTCCGTTTCCCGCCACGCGGCGACGAGCGCCTTCAGCTGCGCCGGGATCCGAGTGCGCCAGTCGGGGGCGAGGTTCTCGCGCCCACCGGGCGGTGGGGACGCACTGTTGCCCACCGATTCCTTGGTGGCTGCCTGGCGGAACGCCTCGGTCAGGCCGACGACATGATCGAGCAAGTCACCGACGGTCATACCGGCACAGGGCGTCGCTGCATCGAGCTGGTCGTCGCGGATACCAGCGACCACCACCGCCAACTCGTCGGCCGCGGTGTCGAGATCGAAGGGCTGCATGCGGGTCTCCTCCGTGGATGGAACCTTCCACCCATATCGACGCCGCGAGCCTCCCGAATTCATCGGGTGCCGGATCCCGATCCGCATTCTCGAGTGGTCGAAAATGCGGTTACCCACGGGTAGAGTGCCAGGTCAAGAAGT # Right flank : GTCCCGGTTGAACCGTCGATTTACCGCCGGGTGCGGGCAGGAAGATTGGCGTGAGTTCACCCCTGGCGCAACGGGATTCGGTCAATCACCGGGACGGTGGCGTTCAGGACTCGGAGGCGGCTCAGGGAGAGTTGGGCCTGGCCGTTCGAGCCGGCGCGGCCGGCGGTGCCGGTCACCGTGCGCAAGGGACCGTTGTAGATGATCTCGTGTGGGACGCCGGGGTGGCGGGAGAGGGCGAGGACGAGGAGGGCGTCGGCGGCGGCGTGGGAGGTGGTGCGGAGTCCGATCGCTCGGCTGCCGTAGGTTCCTTTGATTTCGACCGCGCGGCCGTCGGCGTCGATCGCGTCGTGGCCGGTTGTGGAGGGAGGTTGGAGGGTGATGTCGAACAAGGCTTCCGCCGCGGCTTCCGCGAGGGCACCGACGAGGTGGCCGTCCGGGGTGAACTTCCGACCCGGGTGGAGCGCTTCGAGTTCGGCGACGATCGCGTGGAGCTGCGAGAC # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33379-34080 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRS010000008.1 Nocardia puris strain N-28 NODE_8_length_363445_cov_32.721142, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 33379 30 93.3 31 ............................TT TGGCGGGTTCCGCCCAGGTTTGGGTATCTCT 33440 30 100.0 31 .............................. AACAGTCGCACGATGACCGACGAGAATGACC 33501 30 96.7 31 .............................C GTTCGGCCTCACCACGGTCGGCAGCCTCGAC 33562 30 96.7 31 .............................T CATCACGTGACACGCGAGTAAGCTGGTCGTT 33623 30 96.7 31 .............................A ACGCTCCGCCGCGCCGCCGAACCCCTCTCCA 33684 30 93.3 31 ............................CT CCGCAGGAATCGGCGGAGGAGGCGGTGTCGG 33745 30 96.7 31 ............................T. CCTGAGATCCCCGAACCCACCGTCCGCTGCA 33806 30 96.7 31 .............................T GGTGCGCCATCTCTCGGCGGGCGCGCGGCCA 33867 30 96.7 31 .............................C CCTCATTGGTGACGATGACGCGCCGCGGACC 33928 30 93.3 31 ............................CC TGGCGACCGGCGCGCACGGAGTGATCCAGGG 33989 30 100.0 31 .............................. AGTGAACGGCGATGCCTGACACCACGACCCG 34050 30 80.0 0 .......T.....T.......CGT...G.. | C [34069] ========== ====== ====== ====== ============================== =============================== ================== 12 30 95.0 31 GTGCTCCCCACGCACGTGGGGATGGTCCGG # Left flank : TCCCAGCCGAACCCGCCCCCACCCTCACCCTGATCGAGGTGATGAACCGCGCCAACCTCGACTCCACCCACTCCCTCGACGGCCGCGAAATCACCCTCTCCGGCTTCATCCTGCGCGCCGAACACGGCGACGGCCTCGACCTCGCCCGCGTCGCCATCAGCTGCTGCGTAGCCGACGCCCGCTACGTCCGCCTCCACCTCACCGCCCTCCCCCAACCCCTCCCCGAAGACACCTGGATCGAAGTCCGCGGAACGGTAGTCCCCAACAGCGCCCCCACCGACCCAGACCTGACCCCGACCCTGACAGTCCACGACTTTCGCTTGATCGAGCGACCGGAGAACTCCTACGAACGAATCCGCTGAGTGCGAGAGTCGACCCCATCGAGACTTCGCCAACTCGGCACAATTCACGAACCGCCCCGACGCGCCCTCCCGGAAGCCCGGATCGGAGTAGTGGTCGAAAAATGGGTTACCCACCGGTAGAGTGCCTGGTCAGGAAGT # Right flank : GACGGTACGCAGTCAGTCCGACTCGGATTTGGCGAGTTGGCGCACCACCACGCTCGCGGGGCGGAGGGAGCGGGTGCCGACGGTGAGGCCCGGGGCGATGAGCGCGTCGACGGTGCGGTCTTCGGATGGGTCGGTGGTCGACACCACGTCTGTGGCTTCCATGGTCAGCGAGTCGAACGCTGTTCCGGGGCCCGGGGTGAGGAGGGTGGCGCCGCGGCCGGTGAGGAGGCGCTCGATGCGGGTGGTCACGGCGTCGAAGGCGGCGCGTTCGCGCTCGGATTCGGCGGTGGCGGCGCAGGCCGAAGTGTCGCCGTGGAGGGCGAAGAGCTCCACAACCAAGGGCAGGTCCGCCCCCGCGCGGTCGCGGCGGTCGCGCTCCTTCGCCTCGTCGGCCAGGCGGTCGAGGGTGGCGGCTTGGCGGGTGACCACGCGGGTCAGGTCCTCGACGCGTTCGGCGAGTTGGGCGAGGGTCTGCTCGACGGGATCGGTCATAGGCGCAC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 89443-88987 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRS010000001.1 Nocardia puris strain N-28 NODE_1_length_798072_cov_31.549584, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 89442 30 96.7 31 ............................C. GCACCATCGGTTACGAGTGGATGGCGCGCTA 89381 30 96.7 31 .............................T TCGCGAACTGGCGCAGCGTCATCGACGTGAA 89320 30 96.7 31 ............................T. CCGGGGCGGTGCTGGCGACAAGTCCAGGTGT 89259 30 100.0 31 .............................. CCCGCAGCCTCGTGACGGCCCGCTCCGGCGG 89198 29 93.3 31 .....-.......................T GGACAATGCGGCCGATACTGGGCTAGGGCAT 89138 30 96.7 31 .............................A CCTGGAGGCCGAAGTGCCACGGGTGGGTGAG 89077 30 93.3 31 .C...........................C GGTCCAAGGCCACGAAATGGCCGGGGTGATC 89016 30 83.3 0 .........G................GTCC | ========== ====== ====== ====== ============================== =============================== ================== 8 30 94.6 31 GTGCTCCCCACGCACGTGGGGATGGTCCGG # Left flank : CGACTTGTCATGGCACGCTCCGATGCACGACCTGCTGCGTCGAGCAGTCGCGGAAGGGCTTGGGGAGCAGAGCATTACGGCGCTGATCGAGTTACTGGCCACTTCTCTGGATCGAGAGTCGACTGCACAACTCACCAGTCAGTGAAGTCCGAGATGTCCGCCCGGTGCGGCAGAATGCGCGCTATTGCCGGCGGGGATCCGCGACGTCGAAACCTGTCTGCGTCAGTGCGGCGGATCGACCGGTCGAGCATTCAGCGGTCAGGCGATTAGTCACGGAGGTCGTCCATGTGCGTATCAGTTGCTCGGCCGGGCGAACAGTCAGGATCCCGCAGGCGATCTCGGCTGCCGGTTCGCTAGGACAGGGGCAAGAAGTCGCGCGGACTATCGCCCCACCGTCGCCGTTCACCTACCTCGGCGATGTCGCACGGCACGCCTCCTCCTCGCCGCACTCAGTGGTCGAAAATCTGGTTACCGACCGGTAGAATTCCTGGTCAGGAAGT # Right flank : TTCCCGGAGCAGGCCGGGCACGAGGTGGGTCGACCCCCCGAATCGTGGGATGACCGTGGTTACAGATGATCAGGCCCAGCCGTCGAGACACTCCCACCGGTGAGAGATGTCAGGCTTGTTGCAGCACAAAGAAATACGGCTCCGCCAGACCTCTCAGGTCCATGACTCCCAGCAGTGTCGCCCCGTCCACCCTGCGGAAATGGTCGATGATCGGCAAGTGATCGTAAACCATTGCGGCACTGACAATTCCCCGGTACCCGATGTTCCGGAGACGCGCCGTCGGCCTGTCGGTGCGCAGCGCTGGGCGCAGGACAGGGAGGAGTTTTCGACCGGCTTGGACGGCGGGTAGCGGAATACGCCCTGCCAGGCTCAGAGGTACGCGTCGGGGATCGACCGGAAACAGGTTGCCCGCGTCGTCGGCGAAGACAAGCGGGTGCACGAAATCGGCGCTGTCGAAACGCTTTCCATACCAGCCACTCGCGGTCAGCACGCCGTCGAGG # Questionable array : NO Score: 3.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 92425-92213 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRS010000001.1 Nocardia puris strain N-28 NODE_1_length_798072_cov_31.549584, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 92424 30 90.0 30 ........................G...CT CGCCAAGCTGCGTCGGGGCTCGGTAAACAG 92364 30 100.0 31 .............................. CGTGAGTGTGCACCAGCCATCGCGCCGCCTC 92303 30 86.7 31 .C............T.........GC.... GCTATCCGATCGGCACCGGCTGGTCGGATCA 92242 30 83.3 0 ........T........A....G.....CA | ========== ====== ====== ====== ============================== =============================== ================== 4 30 90.0 31 GTGCTCCCCACGCACGTGGGGATGATCCGG # Left flank : CCCAGTCCTCACCGAAGCCCGCGACACCCTGTCCCGTTATTACGCAACAGAACTCGGCGAACCGTTCACCACCGCAGGCCTCTGCTACTACCGCGACGGCCGCGACAGCGTCGCCTGGCACGGCGACACCTTCGGCCGCGGCGCCACCCACGACACCATGGTCGCCATCCTCTCCGTCGGCGCACCCCGCACCCTCGCCCTCCGCCCCCGAGGCGGCGGCCCCAGCCTCCGCTTCCCCGTCGGCCACGGCGACCTCCTCGTCATGGGCGGCTCCTGTCAACGCACCTGGGAACACGCGGTACCGAAGACGCGTCGGGCGACTGGGCCACGGATCAGCGTTCAGTTCCGGCCGCGAAACGTCAGGTGAAGCCTCCAGGGCCCGTACAGTTGACGTATGGCGCTCGGCTACGACCGGGCACACTCCGCTATCGGACATCACAACGCGAGCCGGAGTGGTCGAAAAACTGGTTACCCGCCGGTAGAGTGCCTGGTCAGGAAGT # Right flank : ACTTCCCGCGTCCAAGCAGGTCTCAACGAACCCACCGCATCGACGCGGTTCGTTCTACGCCGATTTCGGACGAGCGCATGGACTCTCGGGAGCGAGCAGACGAACATGCAGCACTGTGCTCGTGCCAGTGCTCGGATGCCGATAGGTTGATCAACATGACGCACGCGCTGACTGTCATGCCGCTGCACACCATCACCCAGGTGTTCGGCGAGGATGGCCTGCGCGAGAGGTTCCTTCTCGAAATCGAGGACCTGCCGGATCGTGACCGCCTCACCGACGCTCTGGCCCTCGCCACCGAGCTACACCGCAACGACGGCTACGGCGACGAGCCATACATCAACCACCTCTTGCGCGTCGCGATCCGCATCGCCTCGCACTACGAGGTGCGCGACCCGGACATCGTGATCGCCGGCCTCCTGCACGACTCCGTCGAGGACCACCCCACTGAACTCGCAGGCACCTGCCAGGGCTCACCTACCGAGGCCGCGCTCGCCGAACTC # Questionable array : NO Score: 3.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGATCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 94397-94123 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRS010000001.1 Nocardia puris strain N-28 NODE_1_length_798072_cov_31.549584, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 94396 30 100.0 31 .............................. CCCGCCTCCAGCCGCTCGTAGGTGCGGCGAC 94335 30 100.0 31 .............................. TATTGTGCGAGATCGCTGTTCACCGCAGATC 94274 30 96.7 31 .............................C ATTCGCCGGACATATGCAGGTGCGCAGTGAC 94213 30 83.3 31 A.......................AC..CT CGGTGACCTCGGGATTCAGCTCGATGTCGAG 94152 30 93.3 0 ........................A....T | ========== ====== ====== ====== ============================== =============================== ================== 5 30 94.7 31 GTGCTCCCCACGCACGTGGGGATGGTCCGG # Left flank : CGCCCCCTCCCCCGGCACCCCAGCGTCCTCAGCCGCTGCTTCCCACTCGGTCAACGCCAATTCCGAACCCGTCCCGAGTTTGCACCGGACGAAACCCGGAAAGCCTTGGGTCACTTCAGCTCCCAGCGCTGAATAGAACTTTCTCGCGCGATCCACATCCGCGACACCGAGCATGATCACACTCACCTGAATCGCCATATCGCTGCCCTCGCTTCGTGGTTGATCGATTCGTTCGCGACGCCGGATTCGCGCCGGTCTCGATTCTTCCCGCACGGCCATCAACCATGCTTCTCGATTCCTGACCGATCGCGCCCCCGACGCACGCAGACGAGACAGCCGCATATCGACCCAGGGCGTCGACCTGCCTCATCTATCGCTGCCCGGTGTTCGCGTCGCACCGCATGCCCACGCAGCCGCGCATCACTCGACGGCCGACTGAGCCCGTCCCAGGAGTGGTCGAAAAAGTGGTTACCAGCCGGTAGACTGCCTGTTCAGGAAGT # Right flank : GCCTAGTCGATGAACGCCGCAGCCGCGGCACACCCAGACCGCTGCATCCGCGGCCGACACCGCCGTAGCGGATGACCACCTGTTGAGTGGGCGCACGATCATGGCGAATACGGCTTGTCCGCATCAGGTTTCAAACCTGCACAAGTTAATTTCGCTGGGCTCGCCCGTCGAAACTGCCGGATGAATCGAATGACACGAGCTCGAACACGACCGAACCATCCACAATCCGATCATCGAAGTCACCGCAACGAAGCCTGGCTCAGCACACGGCGGGCCAATTCCGCTGCGGTTCCCGTAGTCGTATCGACGACCGCGTCGTAGGGGCATCCATGATCGTGCACTATGTCGAAATGCCCACGCGCCAAACCGATTTCAGTGCGACGACGGGCCAACTCTCGTTGCTCGGCGACAGCGAGGGGACAGTTGACGCAGACCAAGTGAACGCCCAGACCGGCCAGCGCCTCCATCCACATCGGCATAAGATCCGGCGTCAACAGCAT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //