Array 1 119711-120415 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGCP010000007.1 Corynebacterium ulcerans strain 04-15 NODE_7_length_120418_cov_92.151533, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================ ================== 119711 36 100.0 35 .................................... GGTATAAGCACGCGGGCTTGCTGGGCTGACCAGAA 119782 36 100.0 36 .................................... ATCTGCTAGGGGGAACCACTCGAGAATTTGCTTGTA 119854 36 100.0 35 .................................... TATTTCACCTGTGACACTCACTTTTTCTCCTTTTC 119925 36 100.0 60 .................................... CTAGGAGCAGAAGACACCGACTACGTCAGAGCAGTAACCCGAAAAACACCCTCATCGCAG 120021 36 100.0 38 .................................... AGGCGGACTTCGCGCTGGTGGAGGTCTACATCGCGGTA 120095 36 100.0 36 .................................... GTTCAGGAGATGAAAACGTGGACGACTGAGCAGCTG 120167 36 100.0 35 .................................... TTCGGTGGGGATGAGCAAGCTTTTCCGGTGACACC 120238 36 100.0 35 .................................... TTCGGTGGGGATGAGCAAGCTTTTCCGGTGACACC 120309 36 100.0 35 .................................... TTCGGTGGGGATGAGCAAGCTTTTCCGGTGACACC 120380 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================================ ================== 10 36 100.0 38 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Left flank : AAATACGATGAGGCGGGATGATGTTCGTCGTACGATTATCGCCTACGATATTGCCCACGATAGACGTCGAAATAAGCTAGCTAAGATCTTGCAAAAATATGGCGACAGGATCCAATACAGCGTTTTTGTTGTCGATTGCAGCCCTGCAAAGCTGCTTCGGCTAAAGGATGAAATAAAACTCAGTATTAATGCTGAGGAAGATTCCGTTTTATATTGCGATCTTGGACTGCTGTCGAAAGTAGACACCACATTTACTTACGAAGGCAGAAAACAAGAGATCACTGACAATGAATTTCTGATTATCTAGCCGCAAGAAACTACCGCGAAGACCCTGCGGACTTTAAAAATCCCGGGAGGTCTTCGCGGTCACGTTTTCCCTTGTCATTGTGGTTTTCATAGAGCAACAACGATCACCCCTTTGGAAAATAACTTCATAAAAGTCGAGAACTTCGCAATAAAAGGGCAAATACCGAGGCTAAGTCAGTTAAAATGAGGGGGCT # Right flank : TTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 18-200 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGCP010000008.1 Corynebacterium ulcerans strain 04-15 NODE_8_length_80115_cov_92.397447, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ================================== ================== 18 39 100.0 32 ....................................... GGTGGGGATGAGCAAGCTTTTCCGGTGACACC 89 39 100.0 34 ....................................... ATTCGTGAAGATGTGCGCTTTTTAATGCGCGTGG 162 39 94.9 0 ....................................GA. | ========== ====== ====== ====== ======================================= ================================== ================== 3 39 98.3 34 GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGTTTC # Left flank : GCTTTTCCGGTGACACCG # Right flank : CGCTGTAGGGCTGCGCGGTCCTCATCGGACGCGCTGGTGCTCGAGATCTGCGCAATGGCGCGGGCTGTTGCTAAGCTCATAGCCGTGCTTTCTCCCCAGATGGTACTGGGTGATAAGCGAGCGTCAGGTAGTTGGAGCTGCCTGGCGCTCATTCATTTTTCAATATCGCCACACACCCCTACGGAGCATGTACGCACTTCGGATACACGACTCGCATTTGCGTTGTTCAACGCCACAGAACGATCTATCCAGTCCATCGTCTAGGGCCAGCAGCTAGTACTGCTTTATTTCCGTAGACTGCCCAATATGAAAGAGAAAAAACTATCGTCCTTAGTATTCGGAAACGTTATCCTTGAATCTCAGATTTTGGGGACAACCATCCGAATATACGCTGATGACATGCGGTCTTATTCTTTTCGACCTAGCCCTTATGCCTCCCTCTCCGTCCCCTTAAACGAGTTAAAAGGGCAGCTTCAGCCTGACCACGCCGAAGCTCTCGC # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGCGGCTTCGGTCGCAGCCTTTCATTGAGGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 79355-80115 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGCP010000008.1 Corynebacterium ulcerans strain 04-15 NODE_8_length_80115_cov_92.397447, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 79355 29 100.0 32 ............................. GAGTGTGCTCGTGTTCGGGCCTCGGATGTTCA 79416 29 100.0 32 ............................. CGCGCAATCGAAAAGAATAAGGCCAAGGGCTG 79477 29 100.0 32 ............................. GAGGTGTAAAGGGCGAGGGGCGATTTTCCTTC 79538 29 100.0 32 ............................. CGATAAGTGGGAAAGCGCGAAGGGCAATCCGC 79599 29 100.0 32 ............................. CAATCAAAAGGGTGATCTTGAAATCGTTGCTT 79660 29 100.0 32 ............................. GATCATCCGTGGCCCTGCTGGGCCAGTCAGTG 79721 29 100.0 32 ............................. CTAGGCGCTTTCGCAGAGGGCTTTAGCCTCAA 79782 29 100.0 32 ............................. TTTTGAGCAAATGGCGTCCCTCATCCCACCGA 79843 29 100.0 32 ............................. GCTCGCCGCGTGCTCTGACAATTCCACCCAAA 79904 29 100.0 32 ............................. CAACCCCCGATCCGGTGAGGGATGCGCGGCAG 79965 29 100.0 32 ............................. CAACCCCCGATCCGGTGAGGGATGCGCGGCAG 80026 29 100.0 32 ............................. CAGTGCCAGCCGTCAGATAAAACAAGGTCCGT 80087 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 CTTTTCTCCGCGTACGCGGAGGTAGTTCC # Left flank : ACATTATGATGGAGATCCTCACTCCACATCTCCCCGAGCGTACCGACGACCGCCTCATCGGCGGAAGAAACCACGAAGTCCCAGGGCACACACAATATGGTGGTAAATAAATGTTTGCGGTCATCCAAGGACATAACCTTCCGAACCACCTCAACGGCTACCTCAGTCGCTTCCTTTCAGAAGTAGACGCAGGTCTTTATGTAGGAGTTCTATCCAGAGCCGTCATGGAAAACCTTTGGGAAAAATGCCAATCCGTAGACCTAGCAGGATCTCTTACTCTGATTCACCCGCAATATGATGCTGAGCAAGGGTTTAGAATCCGCACAACAGGAAAACAACGGCGCCCCGTCGTTGATCTTGATGGTCTTTTCCTCTCTGCTCGTGGTCTAATAGAAGACGTGCGTTTTGCTGACCCCCTGGATGAAGCCGATGCAATTATTCCAGACGAAGTTTTGGAGGATTTTTGCCCAGAGAGTGAGTAAACGCGCAGGTTATTTAGT # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTACGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 1287-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGCP010000006.1 Corynebacterium ulcerans strain 04-15 NODE_6_length_147814_cov_92.061129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1286 29 96.6 32 ..............A.............. TTATCGCGCAGATTGTGGAAGAAGCCGAGAAG 1225 29 96.6 32 ..............A.............. GGATGCACCTTTGGTTCATTTTCATGCTTTGC 1164 29 96.6 32 ..............A.............. TCATTTTTGGCTTTGATGAAGCTGGCGCGCTC 1103 29 100.0 32 ............................. CCACGTCCCGCCTCAACCTCAGCGACAACATT 1042 29 100.0 32 ............................. GCACACCATTCTCAGCGATCATATCAACCGCA 981 29 100.0 32 ............................. CCACGTCCCGCCTCAACCTCAGCGACAACATT 920 29 100.0 32 ............................. TTCGTTTGTCACGACGTTGCGGACAATGATTG 859 29 100.0 32 ............................. GCTTTGTCGTAGGGGGCGCTGATTGCAAGGAG 798 29 100.0 32 ............................. AATGACCTACCATAAAACCATACAAAAACCTA 737 29 100.0 32 ............................. AACGCCGTGCCCTTTTCAATCTGATCACGCAG 676 29 100.0 32 ............................. TGCCAGACGGAACGTATCTTATGAGCACCTTT 615 29 100.0 32 ............................. AACGCGCCATCATGGGCGGCACCCCAAAGGGC 554 29 100.0 32 ............................. GCAAGTAACTGCACCTGGCGTGTGTTTCCCCC 493 29 100.0 32 ............................. GACTTCCACCCCTCAAAAACCAAACGCTCATG 432 29 100.0 32 ............................. AGCCCGCCACCGAGAAGAAAATTCAGCAGCGG 371 29 100.0 32 ............................. CCCGCGAAGCTTCTGCCACAAAGCCTCGTCGT 310 29 100.0 32 ............................. GGTGTGGGGTTTTTCGGGTTTTGAATCGTGAT 249 29 100.0 32 ............................. CTCTCAAGGTCATCAACCGCTTTGCGCAGCGT 188 29 100.0 32 ............................. CAAAGCTGCTGATCTCCGAGGAACTAATGGAT 127 29 100.0 32 ............................. ACGGACCTTGTTTTATCTGACGGCTGGCACTG 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GGAACTACCTCCGCGTACGCGGAGAAAAG # Left flank : CATAGGCTGGGAAACAAGCAGTCGATAAACGCTCAAAACTAAAAGAATGTTGGATGGCATCTACCGAAATAGCGCTGACCAACATTCAAAACGGAGAAGGTTTACTTCTTTTTCTTGAGTGACAGAACAAAAAGCACGATTATGATCACAAGTAAGGTAGGGATCAGAAAAGCGATACTAAAGCTGCCAATTATAGTCAGAAATTCTACCATCTACCCTCCTAGGGCTTAATCGTAATGCAAGCCCAGTTTCCTGGACCCGCACCTTGCACGTGCGCTCGTCCACAGACCCGTGAATTAGGGTCAAAATTCCTATTTACCTGAAAAGTATGGGTGGTACGGTACAGCGCGCAATTATGTCCCGAGGTCATGGCCTTGCTTTGGCCATTCTCCCGATATGTGACCTCAAATTTATCGACACAGGCATTCGTCAACTGCCCTCCCACATTATAAGCCATAGCGATGGAATTAACGTGCGTCCCCTTCCCGTTTACATATAGG # Right flank : GCTGCCGCGCATCCCTCACCGGATCGGGGGTTGGGAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAACTACCTCCGCGTACGCGGAGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 516257-518422 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGCP010000001.1 Corynebacterium ulcerans strain 04-15 NODE_1_length_521941_cov_91.499048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 516257 29 96.6 32 ............................G AGTTTGTGGGGGCTGCGTTTCGTGAGGCCCCT 516318 29 100.0 32 ............................. TTCATCCGAGGGGGCTCACCATCGCGCATGAA 516379 29 100.0 32 ............................. GGGCCTACGGCTTTGCGTCTGGCCCAGATGAT 516440 29 100.0 33 ............................. CTCCCTGCTCTACGACATCGGGCATATCCCCGG 516502 29 100.0 32 ............................. TGCTCGCTCGTGGCCACCCTTACCGCGCACTC 516563 29 100.0 32 ............................. GAGCAGCCACGGTTTATATCTCGCTCCGATGG 516624 29 100.0 32 ............................. AAGGTTTTTCACGGTTTCGGAATCCGCCATTT 516685 29 100.0 32 ............................. GACTCCGCATCCTCCGGAGCAGGCAATGCAGC 516746 29 100.0 32 ............................. TTCACCATTCTGATGCCGGTTTTCGCGGTTTG 516807 29 100.0 32 ............................. AGTGTTTTCTAGGATGAAAATGACCTACCATA 516868 29 100.0 32 ............................. CGCTGCGCTCGGCTACAATGCTGGCGCTAGCG 516929 29 100.0 32 ............................. GCCCCTGACTATCTCAGGGCATGGAAGGCATG 516990 29 100.0 32 ............................. AAAGCTCCAGCCAAGAAAGGTATGCCAGTAGA 517051 29 100.0 32 ............................. AGGTTCCCAAATCTTTTATTGTTCCTGATTTA 517112 29 100.0 32 ............................. CCCATGCACAGTGACGGGGTGGATAAAAAAGA 517173 29 100.0 32 ............................. TCGTGTGTTTCTTTGCGGTTGTCCAAGAAAAT 517234 29 100.0 32 ............................. AGAATCTATTCCCCTTCTTGGGCGAAGTTTGT 517295 29 100.0 32 ............................. ATCTGGGGCAACTGCTTTGATGTGGAAATCAG 517356 29 100.0 32 ............................. TCCCCGTGAGATCGAGCGAGCTTGTTTAAAAA 517417 29 100.0 32 ............................. CGCCCAACCCCACTCCTCACGGACCGTGGGGC 517478 29 100.0 32 ............................. ACAAAACATAACCCGCATCACACAGGCGGGAA 517539 29 100.0 32 ............................. TTTGAAATAAGCTGCGCAGTGCGTTCACCATC 517600 29 100.0 32 ............................. AAGTTCGAGCAGTTCCTCGTCCTTGCCCCGAT 517661 29 100.0 32 ............................. TGCGGATGAGGCCATAAAAAAGTGGCGAGAGC 517722 29 100.0 32 ............................. TCGCTGAGCGGGTGAAATCCGGTGGCACGCTG 517783 29 100.0 32 ............................. CATCACCCCCGAACTCGCACAATACGCATTCG 517844 29 100.0 32 ............................. CTGCAAAACCCAACCAGCAACCGCCGCCAGTG 517905 29 100.0 32 ............................. CCTGCTCGGGCACAAAGAATATTCCGGCGCTG 517966 29 100.0 32 ............................. AGCAAATTAGGGGCAATCCGGGACCTCTACCC 518027 29 100.0 32 ............................. GATTTATTTGGTGAGGGAGTGATGCGCAGTGA 518088 29 100.0 32 ............................. ATTGAGGCTTATGGTAGGCATCTGACTGCGGG 518149 29 100.0 32 ............................. TCTCTACACATGGTGTAACGGGCCAATGCACA 518210 29 100.0 32 ............................. ACCCGGTGCGTGGGCAAAACCCCGCCCCGTCG 518271 29 100.0 32 ............................. CTACAAACTTTTCTGCAAACGCCACCTCCTCA 518332 29 100.0 32 ............................. ATCATTGCCCAGCTCACGAGCACGCTCGGCGG 518393 29 82.8 0 ....................A...AGC.T | A [518412] ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.4 32 CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Left flank : CGAACACCGCCAGCCCGAGAAACCCCCGAAACTGCGACTGCTCAACATCAAGGATCTGCACGCCATTAGCAGCTAACACTCGGAAAGCTGCTGCCGACACTCCCTGTCGATCCTGGCCTGAAATAGTAATAACAGCCGGGGTCAGCTCTGGGCGAAGGCTAACAGTTACTTGAGGCTGGTCCAGTTCAATCACCGATCTATTGTCGCACGAAGCCTTTCAAATCCTCCCAGTGCTCCCCTATTTAGGAATGACGGGCTCCGCATCAACGAATGCGCACTTGCTCCCCATCCTATGGGGCAAAGTACCTTTCCTTCGGTCTTGTGGTTTTACACCTTCTTGCGGATCCTGCGGGGGTGTGCAATAGTCTTTCCCGCTTTTGTCATGGTCTAATAAGGAAGGCTAGTTTTCGCACCGATTGTATGGAGTTAATGTGCTGATTCCAGACGCAGTTTGGACTGTTTTTGACTTCTTTGGTGATTAAACACGCAGGTAAGTTAGT # Right flank : TACAAAAACCTATCATCAGCCTTGATGAACTTTTTAGACGTCGAAGACCACAGAAGAAAACAACAAGTTGATCCGGTTTTCCAGCCACTGGCAAGACCTCAGGAGTAATTCACCACGTTGCTATCGCGACAGCAATCAAGAGGAAGAGCGAAGACATGAATACGTACCAGAAAATAAAGGAAAAGACAGGAGGAAAAATCTATCTCGGAGTAGGACTACAACCAGGCAATCAAGACGAAATAGCTATCGAAGCCTGCTACATAGAAGCACTTATTGACTATGGCTATCTCGATGTAGAACTAAAGAAAGAATTTCTAAAATTATGGCTCACTGATGATATGTACGATGATCTGAGCGATCTTGACTCAATAGAACTGAAAACATATCGTAACCTACTAAAATATGCAGGCATGCAGCCTCGTGTAGATACGTCTGTCTTCCGCCCTGAGCCCGCATAAAACTACATCGTTTAATCAATACATCAGTAACAAGTTTTCTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTATGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 38-249 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGCP010000013.1 Corynebacterium ulcerans strain 04-15 NODE_38_length_286_cov_115.773585, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38 29 100.0 32 ............................. CAGTGCCAGCCGTCAGATAAAACAAGGTCCGT 99 29 100.0 32 ............................. GATTTTGAACCCTGACCTACACCGACTCGCAG 160 29 100.0 32 ............................. GCTCGCCGCGTGCTCTGACAATTCCACCCAAA 221 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 CTTTTCTCCGCGTACGCGGAGGTAGTTCC # Left flank : GTTCCCAACCCCCGATCCGGTGAGGGATGCGCGGCAGC # Right flank : CAACCCCCGATCCGGTGAGGGATGCGCGGCAGCTTTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCTCCGCGTACGCGGAGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [18.3-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //