Array 1 470302-461580 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMBT01000002.1 Paracoccus lichenicola strain YIM 132242 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================ ================== 470301 29 100.0 32 ............................. ACGTTTTTCACCTTCTTCCAAGGCTTCATTCG 470240 29 100.0 32 ............................. ACGGGTTTCAGGCCCTTGTTCCGGTCGGCGCA 470179 29 100.0 32 ............................. CTGCCGACGCTGCATTTCCGGCATAGACAAAA 470118 29 100.0 32 ............................. GGCTGACTGCCGGTCCCCCGCTGGTCTATAAC 470057 29 100.0 33 ............................. CATAGGCATCCGCGCGCCCTCCTCCCGCGCGGC 469995 29 100.0 32 ............................. CAGACGTTAGATATGGCCAGCTTCGGTGAGGA 469934 29 100.0 32 ............................. CCGGGCGTTCAGGTAGTCCGTCTTGCCCGGCT 469873 29 100.0 32 ............................. GTAGCCTAGTCCATCGTTCAGATGGTCAAAGC 469812 29 100.0 32 ............................. ATGGACTTGCCGTCCTCGATGGCTTGGACAAC 469751 29 100.0 32 ............................. CCTGATCATGGGATGGCTGTCCCGCATCTTCC 469690 29 100.0 32 ............................. ATGGAGACGCAGAGCCGCAATCTGGTGGCTGA 469629 29 100.0 32 ............................. TCACCGATGGACTTCCAATTCGCAGATTTTTC 469568 29 100.0 32 ............................. CCGGTGTTGCGGACGTAGCGGCCCGCGATGGC 469507 29 100.0 32 ............................. ACACCTGCGGACAGCCTGACCGCGCCAATGCC 469446 29 100.0 32 ............................. CTGGAAACTGACGTTCTGGAGGCGAGACGTTA 469385 29 100.0 32 ............................. CTGGACATGAGGGTTCCTCTGTTTGCCAGTTG 469324 29 100.0 32 ............................. CGTCAATGCGCGTATCTATGTCGGCAAGCCGA 469263 29 100.0 32 ............................. TCGATAGAAACCCTTACTGGCCGCGTTTCAGA 469202 29 100.0 32 ............................. CAGGTCGAGGCGCTTTCCAGGACCGGCCACGA 469141 29 100.0 32 ............................. CCTTGGTCGCTGAATTGAAGCGCAGGGGTTAC 469080 29 100.0 32 ............................. TCCACACACGACCGACCTGCGGGCGAACCGAT 469019 29 100.0 32 ............................. GCCAAGCTGCGCAGCGACCTGACCCTGCGCGA 468958 29 100.0 32 ............................. GTCCGCCGCCAGCTGAAGCAGGCATGCAAATG 468897 29 100.0 32 ............................. GCGCAGCTGCGCGAGGCCATCGGGATGACCGA 468836 29 100.0 32 ............................. CAGGGCCGCACGTTTCTTGCCGTCCGCGTGAG 468775 29 100.0 32 ............................. GCAGCAGTTTTCCTGGCCATGTCGATATTGGC 468714 29 100.0 32 ............................. CGATGTTGCATTGCGGCGAGGGCGTCAGCCTC 468653 29 100.0 32 ............................. GCGACCAGGACCAGCTTGGCCGTGCCCGTCCC 468592 29 100.0 32 ............................. GTGTCATGGACATTTGTCCACGTCAATACAAA 468531 29 100.0 32 ............................. GCGATGAGCCTTGAGCGGCTGCGGGAATTGGG 468470 29 100.0 32 ............................. GAAAATCAGGGTTATTCCGAAGACAGCAGCGA 468409 29 100.0 32 ............................. GGTGGCCGATCTGGTAGGTCGGTGCATCGCTG 468348 29 100.0 32 ............................. CAGGGCGTCATTTCGCAAGGCGAGATGAACCG 468287 29 100.0 32 ............................. CTGGCAGACCGCTACCAGACCGACACCGAGAA 468226 29 100.0 32 ............................. GCGACGGAAACGGCCCCGTATCCGTATGTGAC 468165 29 100.0 32 ............................. GTGTATGAAAAGCAGGTCGAGGAATTGAGCAG 468104 29 100.0 32 ............................. GGGCAGGGCCACGCTACGGCGTAACTCCCAAT 468043 29 100.0 32 ............................. TCCCGCGCCGGGGTGCAGCGTCCGGCCTACAC 467982 29 100.0 32 ............................. GCGTCAATGGGCAGCTTGACGACAACGCCCCA 467921 29 100.0 32 ............................. CCGAGGCGTGGGTGCGGGACAACCTGAACCGG 467860 29 100.0 32 ............................. CGTGATGGCCTCGCCCTCGTGCAGACTAACGA 467799 29 100.0 32 ............................. GCGTCTGCTATTCGATGGGCAGAGCATACCGT 467738 29 100.0 32 ............................. CGCAAGGTTGCCCGTGTGCATGACGGGGATAT 467677 29 100.0 32 ............................. GGCATCCTGGGCGGCGCTTCAAGGAGAATGAC 467616 29 100.0 32 ............................. TTGACCGTCACGCGGGGCATCACTTCAAGGGA 467555 29 100.0 32 ............................. CCTCCCGGATTGCTTTTCTCACGCGCTTCTTA 467494 29 100.0 32 ............................. TCGGATGAGGAAGCGGCGCAGGAATATAGGCT 467433 29 100.0 32 ............................. CGGGCCTGCCAGCCGTGCTTGGGCTTGCCGTC 467372 29 100.0 32 ............................. CTTGCGCATCTGCTGGCATGAACCCCCCGCGC 467311 29 100.0 32 ............................. CGTCCGAAAAACCCGGATGAGGATACAAAGGA 467250 29 100.0 32 ............................. CCACCGAGGCGTCATTCCAATAGGACGGCCCC 467189 29 100.0 32 ............................. TCCTTGAGACGCCCCCACAGCCACAGCGCCTT 467128 29 100.0 32 ............................. GCCTTGAGTGATTCGTGCATCAGGGCGCGGTC 467067 29 100.0 32 ............................. CCGTGGAAACCGCTGGCACGCTGAACGGGTGC 467006 29 100.0 32 ............................. CCATCATTCATCGGCGCCGGTGCCACTCGGGC 466945 29 100.0 32 ............................. CGGTGCAGGACGTGGGGATCACCATTGATGGG 466884 29 100.0 32 ............................. ATCGTGTCGGCAGAATACTTCATGACGGACAA 466823 29 100.0 32 ............................. TTTTATAGCATCTGATACTGAACGACCGCCTC 466762 29 100.0 32 ............................. CGCCTCATCATGCCCCCGTGACCGGATCGGAT 466701 29 100.0 32 ............................. TCAGCCATATTCGTAGTGCAATGGCACCTAGT 466640 29 100.0 32 ............................. ACGCGGCCCCTGTGAAACTGTCCAGGCCGGAC 466579 29 100.0 32 ............................. GCGCAGAGGACCGTCCGCAGGGGTTTGCGATG 466518 29 100.0 32 ............................. TATCCTGGCCGTGTGCCGCACGCCGTTCCCTC 466457 29 100.0 32 ............................. AAGAATTACGCAATACAGCCCTCGCTTTGCGG 466396 29 100.0 32 ............................. ATGCGCGCAGGACATGACTCGGACAAGCCCGG 466335 29 100.0 32 ............................. TCGTCCAGAACCGTCGATCCCGAGCCGCGCAG 466274 29 100.0 32 ............................. CGCGTCACCTGTTCGTCCGTCACGGAGCCTGA 466213 29 100.0 32 ............................. ATGTTCGAGCGGGCCAGCTTCGCTTCCACCTC 466152 29 100.0 32 ............................. CGCATCTGATGAACACCATCACCGTCTATACC 466091 29 100.0 32 ............................. GGGGACATCTACGAAGTGGTCCAGTGGGTCAA 466030 29 100.0 32 ............................. TTCGACCCGCCCAGCGACAGGGAATACCGCAA 465969 29 100.0 32 ............................. ATGGTGGACGCGCGAATGGGCACGATCTGACG 465908 29 96.6 32 ...........................T. GCCGTATGCGTGAAATGTTTCTTGATCGTTAC 465847 29 100.0 32 ............................. GAAAACCGCTGCCTTCGCTAAGCTTCGCGAGC 465786 29 100.0 32 ............................. GCCGCAGCGGGTTGTTCCGCAGCGCATCGAGG 465725 29 100.0 32 ............................. CCTTTGAAAAACACATTGAAGCGAAAAGGCCA 465664 29 100.0 32 ............................. GCAGAGCCATTGCGAACCTCTCAGGTGGTGCC 465603 29 100.0 32 ............................. CACTCCCGCTTGATCCAGTTCAGCCTCGCTCA 465542 29 100.0 32 ............................. CCGACGCGGTTCTTGCGGCCGCCCATCTCGTC 465481 29 100.0 32 ............................. AGTTAACGCCGCTAATCTACAGGTTGCAGCAC 465420 29 100.0 32 ............................. CGGAGGCACAATGACCGCCCCCCGCGCCGCCC 465359 29 100.0 32 ............................. CGGCCTGGGCGCCGCGCTTACTAACGGGGGCC 465298 29 96.6 32 ............................T CAGTGGCCTTCACCATCGCCGTGATCGCCCTT 465237 29 100.0 32 ............................. AACGGTATCACCGTCTCCCTTGCCAATATCGA 465176 29 100.0 32 ............................. CTTGATGCGCGGCGGGGTGCTGATCAAATCCT 465115 29 100.0 32 ............................. CGAAAAGTGTCTGACGCCAAGCGCATCAAGAC 465054 29 100.0 32 ............................. GCGTACACGGACACCAGCACCACGGCCTGAAC 464993 29 100.0 32 ............................. CTGAGTGAGGAACGGGGGACGCCCCCGGACCA 464932 29 100.0 32 ............................. AAAGCGGCCATGAACATGGAACGGCTGATGCA 464871 29 100.0 32 ............................. GCTCCTAAAGTCGAATTCGGAATTCGATACAA 464810 29 100.0 32 ............................. AAAACGCCTAACGTTGAGTGGCAAGATTTCAT 464749 29 100.0 32 ............................. GTATGGCGTGGAATAGATCGAGACGATATTGG 464688 29 100.0 32 ............................. GCGCGATCACCGTGCAATGGGGCCGCATGTGG 464627 29 100.0 32 ............................. ACGTCGGGGCCAACACCTATTCCATGTGGTAT 464566 29 100.0 32 ............................. CATTCGTTGAAAACGGGCAATTCATTTCGTGT 464505 29 100.0 32 ............................. GTGAGGGCGCGCCTGCGACCCAGGTGCCGGTT 464444 29 100.0 32 ............................. GCCGGACGCGCCAACGTCCGGCCTTCTTCAAT 464383 29 100.0 32 ............................. CTGGCCCCATCCATCGCGTTCCGCTCGGAATA 464322 29 100.0 32 ............................. GTGATCGGCAGCTTGCCGACGTTCTGGCCTTC 464261 29 100.0 32 ............................. CTATCCCCTGATGGATGGGGCAGGCGGGCGGT 464200 29 100.0 32 ............................. GCAGTCCCGCGCGGAATGTCTGCCGAGGCGTT 464139 29 100.0 32 ............................. CTGTCGTTCATTCCCCAGGTCGCCGAGTGGAT 464078 29 100.0 32 ............................. GCTGGACGGCCGAGCATGACGACGATCATGCC 464017 29 100.0 32 ............................. CAGACGGCGCGCCCGCCATGGTCCCTGACCTG 463956 29 100.0 32 ............................. TTCGTGTTTTCGTTCAACGGCCGGCACGACCG 463895 29 100.0 32 ............................. GTGGCAAGCGACGGCGCGGGCGGGTATCTCGC 463834 29 100.0 32 ............................. GCATCGAAGCTGCCTTTGTGGAGGAATGGAAA 463773 29 100.0 32 ............................. GCACAATGGCGGGCAGACGGCACCCGCTACGA 463712 29 100.0 32 ............................. GCTTGCGCATCGGCCCGCGTGATTTCCAGGAT 463651 29 100.0 32 ............................. TCTGAGTCGGACCTGCGGTTCGATCTGGTCAG 463590 29 100.0 32 ............................. ACGGTCAGACGGTAGAGGACGGTCATGTTAGC 463529 29 100.0 32 ............................. GCCAAGGTGATCAGCGAGATCGGCGAGTCGCT 463468 29 100.0 32 ............................. ATCGCACAGGAAAGCAAAGATGAACGCGTAAG 463407 29 100.0 32 ............................. GCTTCATTGGAAGCGGTGGCGATCAGATAGTC 463346 29 100.0 32 ............................. AACAGTTCACGCTCACCGCGATGCGGGCGCTT 463285 29 100.0 32 ............................. ATCAGGGCCGTCATGGCCGAGCAGGAGGAGGT 463224 29 100.0 32 ............................. TCTGCCATGCACTGCCGAAGGGCGGCGGCGCG 463163 29 100.0 32 ............................. CGGCAGGCCCGCAGAAAGGCCAAGGCGAATGG 463102 29 100.0 32 ............................. ATGGACGACCTGGGCCTGTGGCTGCACACGCA 463041 29 100.0 32 ............................. GCCGAACCGGCGTTCCAGGCGGGGCAGGCCAT 462980 29 96.6 32 ...............A............. TCACGCCCGGCTCGGTCATCATCTCGGCAGGT 462919 29 100.0 32 ............................. GTAAATGAATTTTTCGCCTTTTACGCGTGCAA 462858 29 96.6 32 .......T..................... CGGTGATGGGGGTTCAGGTCGGCCATGGGCAC 462797 29 100.0 32 ............................. CCATAGGTCAGACCCCCGGGTTGCGACCATAA 462736 29 100.0 32 ............................. CGCGGCTTCAACGCCGCCCGTCCTGACCGCAT 462675 29 100.0 32 ............................. AAGACGAAAGAGCTTGACGCGGGCCTGCGCGT 462614 29 100.0 32 ............................. GCTATCGCTATCGGGTCACGGCGCTTGTGGGC 462553 29 100.0 32 ............................. ATGTGGTATGGCGGGCTTCCCACCCGCCCGTC 462492 29 100.0 32 ............................. CGCGTGGATGCGGTGGGGGTCAAGATCGACCC 462431 29 100.0 32 ............................. ATCCCGAGGCGGACGGGTTGCGCCTTGTGGGG 462370 29 100.0 32 ............................. CTATCATCCGTCTGGCGATGACCCTGGAGGCA 462309 29 100.0 32 ............................. GTCGATGTCCTGAATGGAAGCGGCAAGGTTGG 462248 29 96.6 32 .....................G....... TATTGACCAAACGCAGCACGGAACATTTCGGT 462187 29 96.6 32 .....................G....... GCGCCAGCCGGGATGGAGAGCCGTTTGATCAA 462126 29 96.6 32 .....................G....... GCTGTCGAGAAAAAGAGGGTTAATGATTATTA 462065 29 96.6 32 .....................G....... CAGTTGACGCAGTTCATCTAGCGTGGGTAATT 462004 28 96.6 32 .....................-....... CATTATTTCCACGGCGGTCGCCACGGTCAGTT 461944 29 96.6 32 .....................G....... CATCCCAGATGCACGCACCCGTGCGAGTTGCC 461883 29 96.6 32 .....................G....... ACGATCAAGGACAGCCATGCCGAGTGGCAATC 461822 29 96.6 32 .................A........... CCTTGCAAACCCGGCCTTTGGCACTGCTGTAA 461761 29 86.2 124 ..A......................T.AT CCGCGCTGCACAGGTGGGCAGAGGGCACGTCCAAGGCACAGATGCCGGCTCGCCCGTCTTCTGCCGGGTAAACTGCAGGACTCCGCCGCGGCCGGTCAGGCCAAGGCCGGTCTCGACCGCATCG C [461750] 461607 28 72.4 0 ...A...G..G...G..C..-.C.....A | ========== ====== ====== ====== ============================= ============================================================================================================================ ================== 142 29 99.4 33 CTGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : CGACGCCTTCCGCAGAACCGGTCTTCTGGGCAAGATCATCCCCCGGATCGAGGAAGTGCTGGAAGCCGGAGAGCTTCCGCGCCCCGAACCGCCCGCCGATGCCATCGGCCCGGCCTTCGACGAGGACCGGTCAGGCGACGACGGACACCGCGGATGATCGTGGTCGTCGTGACGAACGCCCCGCCGCGCCTGCGGGGCCGCCTCGCCGCCTGGCTGGTCGAGGTCCGCGCCGGCGTCTATGTCGGCGACTATTCCGCCCGCACGCGCGAGATGATCTGGTCGCAGGTCACCGGCGGCATTGATGGGGGCGACGCCGTGATGATCTGGAGCGCCCCCAACGATCAGGGCTACGACTTCGCCACGACCGGCAAGAACCGCAGGATGCCTGTCGATTTTGACGGGCTGAAGCTGGTGTCGTTTTACCCCCCGAATTCCTCGAAATGATCGGTACGCTGGAGCCGATTGAGTTTTCGTTGGTGGATCAATAAGCTGCAACAAGA # Right flank : ACTCGAAGCACGGGCGCTGGATTGATCCGATAGACCGCCTTTTGCGGAAGGTGTCCATCTCGGTATCCGTCCGGGCGGGACATGCAGATAGCAAAATGGATCGGACGGGACAGGGGTGCCTATCCGATCTTCCGGCGGGATTCCGTGCCCGGTATGATCGAGGCAGGCCAGACATTGGCGAATTTGTCGGGATGGCGGCCGGCTGCCTTGAACTGTTCCTTGCGCTTGTGGACCACCGCGAACTGCTTGCGCTGGTCTGCCGTGCGCTCCTTGCTGGGGATCTTCTTCAGCGCCCAGAATTCGGCCATCACCGCCTTGGGATCGAAGTCGATGTGCTTCTTCCAGTCCAGCTCTTCCAAGGACCGGAAGATGGTGAACTCCTGCAGGAGGTCGTCCGCATAACCGGCATAGCGCAGGTCCTTCAAGGAACCGATCGCATGATAGTGGATCAGGAAGGGATCCATGGCATTCAGCCGGTCGATCTCTCTTTGCTTCTTCGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //