Array 1 107966-106184 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHZ01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2073 NODE_2_length_345300_cov_0.259924, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107965 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107904 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107843 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107782 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 107721 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107659 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107598 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107537 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107476 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107415 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107354 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107293 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107232 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107171 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107110 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107049 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106988 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106927 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106865 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106762 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106701 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106640 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106579 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106518 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106457 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106396 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106335 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106274 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106213 29 96.6 0 A............................ | A [106186] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125469-124098 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHZ01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain BCW_2073 NODE_2_length_345300_cov_0.259924, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125468 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125407 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125346 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125285 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125224 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 125163 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125102 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125041 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124980 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124919 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124858 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124797 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124736 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124675 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124613 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124552 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124491 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124430 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124369 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124308 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124247 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124186 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124125 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //