Array 1 1351-163 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSVV01000033.1 Escherichia coli strain OM21c NODE_33_length_44251_cov_1.580500, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1350 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 1289 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 1228 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 1167 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 1106 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 1045 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 984 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 923 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 862 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 801 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 740 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 679 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 618 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 557 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 496 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 435 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 374 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 313 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 252 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 191 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 93976-92117 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSVV01000005.1 Escherichia coli strain OM21c NODE_5_length_102630_cov_1.505029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93975 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 93914 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 93853 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 93792 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 93731 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 93670 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 93609 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 93548 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 93487 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 93426 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 93365 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 93304 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 93243 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 93182 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 93121 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 93060 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 92999 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 92938 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 92877 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 92816 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 92755 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 92694 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 92633 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 92572 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 92511 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 92450 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 92389 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 92328 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 92267 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 92206 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 92145 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //