Array 1 177993-179729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXJS010000002.1 Escherichia coli strain ARS-CC9630 NODE_2_length_259863_cov_42.1667, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 177993 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 178054 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 178115 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 178176 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 178237 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 178298 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 178359 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 178420 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 178481 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 178542 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 178603 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 178664 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 178725 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 178786 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 178847 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 178908 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 178969 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 179030 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 179091 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 179152 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 179213 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 179274 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 179335 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 179396 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 179457 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 179518 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 179579 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 179640 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 179701 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 195228-196234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACXJS010000002.1 Escherichia coli strain ARS-CC9630 NODE_2_length_259863_cov_42.1667, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 195228 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 195289 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 195350 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 195411 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 195472 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 195533 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 195594 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 195655 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 195716 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 195777 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 195839 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 195900 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 195961 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 196023 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 196084 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 196145 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 196206 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGATGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //