Array 1 164065-162401 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOG01000163.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 88-0312 SEEH0312_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 164064 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 164003 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 163942 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 163881 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 163814 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 163753 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 163692 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 163631 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 163570 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 163509 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 163448 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 163387 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 163326 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 163265 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 163204 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 163143 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 163082 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 163021 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162960 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162857 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162796 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162735 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162674 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 162613 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162552 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162491 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162430 29 96.6 0 A............................ | A [162403] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181449-180323 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOG01000163.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 88-0312 SEEH0312_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181448 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 181387 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 181326 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 181265 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 181204 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 181143 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 181082 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 181021 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180960 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 180899 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 180838 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 180777 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 180716 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 180655 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 180594 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 180533 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 180472 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 180411 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 180350 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAATAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //