Array 1 136110-135322 **** Predicted by CRISPRDetect 2.4 *** >NC_014537.1 Vulcanisaeta distributa DSM 14429, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================================== ================== 136109 25 100.0 46 ......................... ACGATGCCATTATGCGCTGATAAAAACATTAGCAATGCTTTCCCTG 136038 25 100.0 44 ......................... GCTTGGTAGCCGGCGACCATGACCGTGCCGTTGTACGTCCCCGG 135969 25 100.0 43 ......................... GTGATAACCCTCAAGCCAACACTCGAGGCAAGCCTCCAGTCAC 135901 25 100.0 42 ......................... CTTGAGCGTTTCTGCCACACACCTGCATCGTTCATCTCCGCA 135834 25 100.0 47 ......................... CCCTTTGTAATAATGCCTCACTCGCCCTTACTATTCTATATCCTTGT 135762 25 100.0 45 ......................... GTCTCCATTAAATGCATCTTCCCCGACTTTATAGCACACAATTTG 135692 25 100.0 42 ......................... TACTTCCTTCCCTTGAACAGCCTGATTTGTAGTCCATCCTCA 135625 25 100.0 43 ......................... ATCCTCATGATGCCAAAGTTGAAAAGGGCAATGATATGGAACG 135557 25 100.0 45 ......................... TATTATATCGCCAGGCATTGACTCATACCTCACCTCAATCAGGGA 135487 25 100.0 44 ......................... GTACATTTCCGCCATAGAGTCCCACACCCATACGGTTATGTAGC T [135477] 135417 25 100.0 46 ......................... TTAGAGCCCAGCCTGGAGTCTTGATTCGGCGAATGAGGATAGGTAT 135346 25 88.0 0 ............G........G.G. | ========== ====== ====== ====== ========================= =============================================== ================== 12 25 99.0 44 GAAGATTTCAATAGAATATTGAAAG # Left flank : TCAGTAAGCCAAGCCCTCCAGTTGACCAGTGAGGACATGAAGTGGTTGGTAACGGCACTGCCACCGCACATGCAGGGCTTAACCACAAAGGCACTCATAATAACGGAGCCAATAAAGAGGCTGGGCATCATCGAACTAGAACCAAGAATCAAGGAAGCACAACAATGAAGGGTTCAGGGCATGAAACCAAGAACCCAAGGCAGGGCAAAATTCACGGCACCATGCACAGCCCATGGAGTGTTTTTCACCAAGCCACACACGACCCAAAACCACACCGCGTGTATGGTCCCATGCACACCCACCAATTCACAATGCATAAAACACCATTGGAACAGGCTCGGTTAGGCGGAGTAGAAATTCCGTGGGAACAACAATTCAATTCCACTTAAACACCGTGAAAACAAGCACGAGCCACAGCAATTAAGAGCAGAAAGACGTTCCAACGGCACCAAAACACCAAGAAGAAAAACTTAAAAAGACCTAAATAAACAAACGCACCG # Right flank : GTTTGTTTCTTGTCTGTGGTTTCCCTTCATTGGTTGCCTTATTAATTGCCTTGCCTCATTAATTGATGGATCCACTCGGCTACGCATTACTTATTGAGGGCTTGGTGGTAATGATTTACGGGGTGGTTAGGGGTGGTGTTGGGGTTAGGAGGTTCATTGCTGCCGGCACTGCCTTAATCCTAGCCTATGCACTACCCACATTACTCGGCATTGCACCCCCCGGCTCACCGACATACTTAATCCTCTACCGTGAGGTGGAGGGCTTGGTTGGTGATTGGTCCCTGGTCTACTACTCGAGTGCCTACGCAGGCCTTGCCTGGGCTGTGGGCATGACGGTACTCAATGTGGTAGCAGTAATAAGCACCCTCGGCATTGGTGCAATCCCGCTTCAGGGGTTCACGGTGATCCAGGGCCTTGGCTTCATCATCGACCCAATCGCCGACGTAATCTTTGCAGTGATGCATGTCGCCCAGGTTATGACGGCTGTGCTACACACCATC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGATTTCAATAGAATATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 1084987-1085506 **** Predicted by CRISPRDetect 2.4 *** >NC_014537.1 Vulcanisaeta distributa DSM 14429, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================================== ================== 1084987 25 100.0 51 ......................... ATGTTGAGTGCACCTAACTCCCTGAGTAATTTAATCGCCTCGCTTGTATTG 1085063 25 100.0 45 ......................... TTCATTATCGAAATGCCATAATCTTCCGAATCCTGCTATTTGAGA 1085133 25 100.0 50 ......................... ATTATCATTGATATTAGGTTTCCGTCTCTTTCGATGCTCTCGATTTCGTA 1085208 25 100.0 41 ......................... TAATGAGACGTGAACCTGTTTGGGGGGATAATGATGGAGTT 1085274 25 100.0 44 ......................... CCGTTGCAAAACCTTCCTCCAGTGTTATGAACCGCGAAACACCA 1085343 25 100.0 42 ......................... AATAGGTCGTGCGGGCTTAATGACGTGAGTATTAGTGCGTGC 1085410 25 96.0 47 ....................A.... TGTGGACCCATTGATTAATGTCTGCTCAGCTATTTTGTTGCAATACT 1085482 25 80.0 0 ........T............GGGA | ========== ====== ====== ====== ========================= =================================================== ================== 8 25 97.0 46 GAAGATTTCAATAGAATATTGAAAG # Left flank : TGGGTTGGGCAGGGACTGAAGGCCTCGGACACCGTGGGCAGGTACTCAAGGCTAACCTCCCTAACCTCCTGAGACCAACCACGAAGCTCCACAGGCAAATCCCCAACACCAAAAACCTTAACCCTATCAAGCAACCTACCAAGCACGAGAAAGACAATGAGCTAGGGAGTAAAAAACAGTCACATAATGCATTAATAAAAACATGGCATGCACGGTAACATGCGTGGTTTGGGGTGCATGCTTCATGGGGTTGTGCGTGATTTAAAATTGCACTGTGTGTATGGTTTCGTGCACACTCACCGTTTTACAATGCATAAAACACCATTAGAACAGGCTCGGCTTTTAGGAGTAGAAATTCCGTGGGAACAACAATTCAATTCCACTTAAACACCACAAGAACAAACACGAACCACAGCAATTAAGAGCAGAAAGACGTTCCAACGGCACCAAAAACACCAAGAAGAAAAACTTAAAAAAGACCAAAACAAACCAATGCACCG # Right flank : ATGAGGGTTTTGGTGGTTAGGGCGTTGTTTGGGTGTGGTGGGTCTTCTATGGTTTGGTGTGTGGGTTTTGTTGCGTTAGGGGTATAAATCCTTAGATGCTGTGGTGGTTTGTGTCCCTGATCTTCGTGTTTAATTTTGGTGTTAGGTCTTCATCACCCATTGTGCTCAGTGGGTTTACTGGCTCGGTGACCATGTCCATACTCCTCAATGTATTAAACACTATCGAGCCTGGCCTCGGTGATGAGGTTCATGCGAGGAGGGGTCCTAAGCCTGTCTCGGTGACGCCGTTCATGCGTGGTGGTAGGGTTTTGTTTAGGGGTGTTTACGTGGCGCCGCCTGGTGAGGAGTTGAGGTTTAGGGTTACGGTTGTTGGGGAGTCCCTGGGCCTTAAGCTCCTCAATGGGCTTGAGGGCGTTAGGGGCGTTAGGATTGGCAGTGTTGATGCGTCGCTTGAGGTCCTCGGTGTCGAGGTTTTTAGGGTTGATGATCTTTGGAGGGTT # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGATTTCAATAGAATATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 3 1086729-1087462 **** Predicted by CRISPRDetect 2.4 *** >NC_014537.1 Vulcanisaeta distributa DSM 14429, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================= ================== 1086729 25 100.0 48 ......................... TCTTCCTAAGAAGCAGTGCCACGCCGGTTGGCAAGTAGCTGTATGAGA 1086802 25 100.0 43 ......................... ACTGTATGTTTATCTGCACGCCACCACCCTGCTGAGTACAGAG 1086870 25 100.0 48 ......................... TCCTCAACTCCTTACCGCTGGCGTTGGGGAACATCACCCTAAGCAACG 1086943 25 100.0 47 ......................... TGGATTTCGCCATAGTCGCCAGGCACCATTGGCGCTATCACCTCCTC 1087015 25 100.0 47 ......................... GTGACGCCACTGAGCGGGGTCGTTAAGCCACTCCACACCATGGTCTT 1087087 25 96.0 48 T........................ TTGAGTTCAGCGCTGAACGCCTTATCTCGATTTTAATGGACATCGTGG 1087160 25 96.0 40 ..............G.......... GGGGACCCGATTGGGCTTGGGCACGCAATGTACTCCTCGA 1087225 25 100.0 44 ......................... ACTTCCCGGGCATGGAGTCGGTCATCGCGAGGGAACTGCCCGAG 1087294 25 100.0 45 ......................... ATTAGGATCGGTAGTAGGGACACCACGATAGACGGCTCACTAAGT 1087364 25 96.0 49 ...............G......... GTCTTTGTCGTGAAGTGAAGGTCAGTCTTTTACCATCACCTCACGCTAT 1087438 24 88.0 0 .........-..T.......A.... | T [1087460] ========== ====== ====== ====== ========================= ================================================= ================== 11 25 97.8 46 GAAGATTTCAATAGAATATTGAAAG # Left flank : TGAGGGGTAGGGTTGTCGCCACGAGGCATGCGGGTAGGCCTGAACTGGGCTTCATCGGGTCTGTGGAGTTCGAGGTGAGGAGCAAGAGGCAGTCAAGGATTCAGCAGTTGTGGCACTTGCTGAATTATGCGGAGTTGATTAACGTGGGTACGGGAAGGAGCATGGGATTCGGAGTAATAAGAATAACAACAAACCAAGCACAAAAACAACACGAGGCGCAGGAACCACCGGTTGAGGAGCAGTAAGAGGTGTGGCCACCTCAATAACAAGGCCCATGAGGGTGCGGGAAAGGCAACTCCACATAAACTACATATAAAGTGCCGCCGGAACAACCATGTTGTTGAGTAATTGAATAATGCCGTGGAAACAGGTAATACCTATTTCGTGAGCATCGTGGGAACAAAGGTATGCCGTAAACGTTCATGAGGATTAATATTCCAGAGAAAATCAGGAGGAGGGTATGGGTAAAACTTATAAAAAACCTAATAAGTAACGTACCA # Right flank : GGAGAATTCGAGAGTGTCATTCCCTGGGTGTACTCATGGGTGTTTTTAGGGCTTTAATATGGGAATTGAATGGTTAATTTCACATTTGTATGCTATGGTTGGCTTCTCTGAGGTTTAAGTGGAGTATTGGAGAGGGAGTTGTTTGTTGTTGAGTTCCGTCATGTTGCATTATGATATAAGTATTGATGGGATAGCTGATGATTCTTTGCGTTATTTTAGGCATTTTAGTACTTCATCATCTATTGCTATGCAGTAGTCATCATCGCATTTCACAATCTTTGTGCAGTTCTTTAGTAACCCAGCATGGGCAATGAAGTTCCTCATATCCTCCTTACCCACGCATTTACATTGGCGGGGGAAGCCCTCATGACACATGGGTAGTATGATGTCTGAGTAATAATTGTCATAAACCCTCAAGCCCAGGTTCACAGCCTTAGAAATCGCATTGTACATGTCGTTCAATTCATCCTGAATTACGACCCTGGCAACATCACTAAGTT # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGATTTCAATAGAATATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 1102760-1103349 **** Predicted by CRISPRDetect 2.4 *** >NC_014537.1 Vulcanisaeta distributa DSM 14429, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================= ================== 1102760 25 100.0 42 ......................... GAAAGGATCATGTGGGTTTTCCCTGTCAATCCCGTGATGTCG 1102827 25 100.0 47 ......................... TCATTGTGAATTCCCATACCTGTGTAGCTGATGGTAATTCATATGCC 1102899 25 100.0 44 ......................... TAGATTTCTACACGGATAAGGGCGTGTTCGACACCACGAGTGAG 1102968 25 100.0 48 ......................... TAGCCTGCCAGCCATTTACACCCTCTGCCTCTATTTTCATTTTTACCT 1103041 25 100.0 43 ......................... AATAATAGCGCGGAAATTGTGGCTGTCCATGCCTTGCTGGTAA 1103109 25 100.0 49 ......................... GAATTTCATCTAAGAACAGTGGGGCCTGCATCTGATAAGTAGTAGCTAG 1103183 25 100.0 48 ......................... ACGATGCCTCTCGAGGGGGCTCAGGAGAGAATGGGGAGTTGAATGAGG 1103256 25 100.0 44 ......................... CACGTATGTCGCAACGTCACCATCCCTGAAGCCACCCATAGCAG 1103325 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ================================================= ================== 9 25 100.0 46 GAAGATTTCAATAGAATATTGAAAG # Left flank : TCGCCGTATCCGTGGCGTAGAACTTAACCCTAATAACATCACCACCAAGCAACCTCCTAAGCAGGACAACCGAGGAACCCTCGGCACAGCACCTAACCAAGTCACCACACGCGAAGTCCCTCAACCTATTGATAAAGCCCTCATTATAGAGGTACCTAGAGAGCCTCGAGTCAGCCTCACGATCACCACCCAACACCCTCCTAACCAACTCATCACCAACAACGCTGGACACCAACGCATTCTCAAGCAAGGACAAACCAACAATAACACCAAGGAAAGCAGGCACAACCAATAATGATATAGGTAATTAAAAACCAAACCATCAGAACAAGTACGTTATTGAGTAATTGAACAATATCGTGAAAACAAGCAATACCTATCTCGTTAAAATCATCAGAACAGGGACGGATCGTGAACATTCGTAGGAATTAATGTTCCAACGAGAACCGAGAAGGGAGTGTAGGAAAAGCTTAAAAAGGACTAAATAAGCAAACGTACCG # Right flank : GGAGCGATAATGTTCATCTAAATCATCGGTGCGAGTCATCACATAAATTAGTTGGGGTTTCAATAGAATAAAGTATTGAAGGTAAACCTTAGTGGGCTTTGAGCTTATGGGGTTGGTTTGATTTTGTTTTTGTGATTGTTGGTTCTGTTGGGTATTGTGATGGTTATGGTTTTTGTCGTATCATTCTTCCGTAGCCCAATGCTGTCTTAGCGCCCAACCCATTATTTAGTGCCTTCATGACTATGTCGCTGATCTCCTTCACCATGCATGCCCCCTGACACTTGCTGTCCATGTACACGTACTCACCCACATCCCTCCCACCGCACTTATACCTTAGCCTGGACCTATTTATCATTACAACGACCCTAAACCCAACGCCCTTGGATATTGCTAGGAATGGTATTGGTGTTGGGTTGACCTGGGGCTCGCTTATGGCTCCCTCGCCCTCCCTGTAGTGTGGGTTTATTATGTCGAGGGTTAGTAGCCCGCCGTTAGCTGGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGATTTCAATAGAATATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 5 1602739-1601217 **** Predicted by CRISPRDetect 2.4 *** >NC_014537.1 Vulcanisaeta distributa DSM 14429, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ===================================================== ================== 1602738 25 100.0 50 ......................... GGTGATGGGTTTCATCAAGGTCGTTTCATGCATTGAGTACGGTGATTTAT 1602663 25 100.0 42 ......................... TGAGGTGATTACCGAACACCTTGAATTCCACGATACCGTTGA 1602596 25 100.0 46 ......................... GGACTAACCTCAATTAACTTCGCACCACACGGTTCAACACCACCGA 1602525 25 100.0 48 ......................... ACCCCACACACACAACCCTACCCTACCTAACTACCCTACTATAAGAGA 1602452 25 100.0 42 ......................... CTTTCCTTAAGGAAATCACGGAATGCTTGATAGACTGCTTTA 1602385 25 100.0 45 ......................... AAACCATCATGAATTTCATTGCCTGGCAATACTGGCACCATCTTT 1602315 25 100.0 46 ......................... CTGTCGGCTTACCGTTAGGGTCCGCAGGGACTCTTATTATTGTATT 1602244 25 100.0 44 ......................... TTTGCTGGTAAGTAGCTGTGTTGACATTCAACGCATTCACAGTA 1602175 25 100.0 46 ......................... ACAATAGGGGAATGGCCGTCTGGCAGTACATCATAATGACTACTGA 1602104 25 100.0 48 ......................... TGTCAACCACGCCTTAAACCACTCACATGCATCGTCATTTTTAGACAC 1602031 25 100.0 48 ......................... TAATCCCTCTTCAAATGTCATTATTTCCTGCCCCGTATCTTTTAACGA 1601958 25 100.0 48 ......................... CGAAGTTATTCCATTACCTGCGAATTTGAGGTGTAGGTGATTAGGAAT 1601885 25 100.0 46 ......................... TTTCTTTCATACATTGTTTTTGCTCAGGACTGATTTATAAGTTTTT 1601814 25 100.0 53 ......................... ATCTGCGTGCACCCAATCCCCTCGAGTTTGCAGTAACATGAGTCTGGGCCGGC 1601736 25 100.0 45 ......................... TCACTATCTCGACCGCGGTCGGCGGCGGCAAGACAGGCCTAGGCT 1601666 25 96.0 48 .G....................... GTATTTCGAGTGGCTTCAGTTCACGGCACCAGGCACCTACGTATTCAG 1601593 25 100.0 47 ......................... ACTAACGGTGTAGCTGTTGACAGTACGGGCAAAACAAATGACTCCAA 1601521 25 100.0 45 ......................... TTCACGTACAACTCGGTTTACAACGTGTGGATATACAACGGAACG 1601451 25 100.0 48 ......................... CGTTGTTTGGTATGTCGATGAATGAGCCAGGGACCTCAATGTGGTGAG 1601378 25 100.0 46 ......................... GAGGAATTCATGAGTGCCAGGATCGAGTATGTGTGTGAGTACGAGA 1601307 25 100.0 41 ......................... AACATTGCGAAGCCCGTGGTTATCAAGAACTTACCGAACCA 1601241 24 76.0 0 ....T....C....G.C....T-.. | G [1601230] ========== ====== ====== ====== ========================= ===================================================== ================== 22 25 98.7 46 GATAATCTCTAAAGAGAATAGAAGG # Left flank : TTGGTAGGGGTAGTGAGTCTTTGGTTGGTGTTATTGGTGGTGTTGATCTTAAGGGTTTTGTTAGGGACCTGGTCTTTAACACGGAGGTTCTTGGCATGAGGGTTAGGAGGTTGGTTCTTAATCTTGGTAGGGGTAGGAGGGTGCCTGCCTTTGAGGGTGTTGCTGAGTACGTTACTTATACGGATAGGCCCAGCTTGTTTAGGCTTCTTCTTGATGTGGTTAATGCTTATGGTGTGGGTAAGAATAGGGCGTTGGGCCTCGGTTACGTGGTTGCCGACGTCGTGGATATTAAGCGCCTATCGAGAGGCCGTTAAACCGCAACCGTGGGAAGACCTGCGTTTATGTGAGATTGAATGTGATTGCTGAAACATGTATTGCCTGTGCCGTACTTATCGTGGGAATAAGTACGTGCCGTGCATGTCCGTGAGCATAAACGTTCCGATGATAGACAAACCCACGCGAAGAAAAACTTATAAGCAAATATATAAAATAACGCCTCG # Right flank : TAATGTGGGTTAGTAGTTGTTGTGTTTGTTTATATCTTGGTTTAGTTAGGGTTGAAAGTTAGTTTAATATAATTGTTTGTGATTGGTTGTTGATGGGTTGGTTTGTTTATAGGTCGGTGTTTGGTGGTTTTGATGATTTGGGTAGGGTTATTGAGTGGGTTAGGGAGAGGGGTAGGGGTGAGTTGCCTTTTGTTTGTGTTTTTCCTGGTAATGCTGAGCATTGGTTTTGGTCTCTTAGGTATTCTGTTGAGGGTGAGGTTGGTTATGCGCTTTGGGGTGATAAGGCTAGTGGTCTTGAACAAATTAAAGATATTAGTGATATCACGGGAATTCCATTTAAGGCCCTTGTTGATAGGTATGTTGATGCTCTCTTTGAGAGGAAAGAGGATGATAACAGTGTTAGTTTGTTGTTGAGGGATGCTGGTAGTGCGAGGCCTGTTATTGGTGTTTTCTACGTGAAGAATGTCGGAATCGTTGGTTTTGGTTTAGTTACTGATATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAATCTCTAAAGAGAATAGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.50,-2.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 6 1610754-1613154 **** Predicted by CRISPRDetect 2.4 *** >NC_014537.1 Vulcanisaeta distributa DSM 14429, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================================= ================== 1610754 25 100.0 45 ......................... GTGCTGTTGATGATCCATGTGTAGCCCTGCCCACTTGATGTGATT 1610824 25 100.0 42 ......................... AGTTCCCCGTATAACCTAGCCAGGTCCTGGCGTTTATGACGC 1610891 25 100.0 46 ......................... ACTGCTAGTTTCCGCACAATGCCTAACACATACTACTACATCAATG 1610962 25 100.0 40 ......................... ATAAGTACTTTCCCAACCCAGGTGGTGTGTACTCTATCCA 1611027 25 100.0 45 ......................... TTGAGCCAGGCGATTGGGCTTGGGTACATGAATGGGACATTGGGG 1611097 25 100.0 43 ......................... CTGGCTTCTGTGTGGTTGCCACGTCCTTTGGTATGCCGATTGG 1611165 25 100.0 47 ......................... GTGATTTAGCACCATTGTGTCCATTCAGAAAATTCCTAAGTAAGTAT 1611237 25 100.0 48 ......................... CAGGATAGACAAGGGATTATTCGATGAACTTGACAAGGAAGCCATAAT 1611310 25 100.0 42 ......................... GCAGGGAGTATTTACATTGCGGACTTAGATGCTGACTTCAAA 1611377 25 100.0 44 ......................... ATCGATTCCCGTGAACACCAGGACGGCGTTAATGGCGAGTATGC 1611446 25 100.0 43 ......................... ACATAATCTATATAGATCGTCCGAGAAAACATTTTCAAACTCA 1611514 25 100.0 57 ......................... TGTTGACTCCCTTGAACCCTGGGATTGGACTCTGACATACTTGTATTAGAGCATTTG 1611596 25 100.0 47 ......................... GTAGATTATTGCGTCATTACTGCTGAACCCAGTGCCTGGGTTGAAAT 1611668 25 100.0 49 ......................... TGCTAAGCTCAGTACCTGTTTCCACAGTGGGTCGTAGACGAATAGGTTC 1611742 25 100.0 50 ......................... TCGACGCGACCTTCTCATAATCCGTCTGAGTCCTCGGTAGCGTCATGGGT 1611817 25 100.0 41 ......................... TGCTTGATAACTCCCTTACCTTGATTTCAACATTTTTCCCC 1611883 25 100.0 43 ......................... GATGAAGATGGGGAACATTGAACTTTGGCAGGTTGTGGATTAT 1611951 25 100.0 48 ......................... CGAATTAACAATGAACCTAATCCAGGAAGCCGTCTCCTCTAGGAGAGA 1612024 25 100.0 46 ......................... GTGGGTTGTGTCGCCTGGATTGTTGACTCCAATTGACTCACGCTAC 1612095 25 100.0 42 ......................... GGGAATTTCCTGCCAGCCACGTCGCCACCAGCCACATAAATG 1612162 25 100.0 48 ......................... AAAACAAAAACTGTTTACAATCAATCTACACCGTCTACACCGTTAAAG 1612235 25 100.0 49 ......................... CTTCTTCCCATCCCCACAGTTGAGTTCTAGAAGCTCATTCGACATATTC 1612309 25 100.0 43 ......................... ATTCCATACAGGCTTGGCTTTTGTCCTCCCATTCCTCTTTTTT 1612377 25 100.0 46 ......................... TTGAATAAAGTGACCTAAGCGTCTGTGATAGTGGACCGTAGCTAAT 1612448 25 100.0 51 ......................... GACATTGGTAAGGCATGCCGATACCTTGCAGAATTAAAAAATGCGTTGAAC 1612524 25 100.0 45 ......................... ATGAACATGAACCTACTGCGTACGTTTGCTGGTATGAATATCCAG 1612594 25 100.0 51 ......................... ATTCTTCAACCACCTCTGGGTAGTGAACCGCAATGCGGACTAACTGCTTAT 1612670 25 100.0 46 ......................... ATCCCAGTCCTTGAAGCATGCAAACCTATCGGAGACGTCTCAGTGA 1612741 25 100.0 42 ......................... CTGAAGTCCCTGGCGAGGAACCTAGCCAAGGAACTAAGGAGA 1612808 25 100.0 43 ......................... GCCAAACCGATGGTGGAACACCCATCGTGAACACGCCGTTCCT 1612876 25 100.0 42 ......................... GTTATGTACCCGGGCACGGTGAACCCGCTTGGCAATACGCCA 1612943 25 100.0 46 ......................... AGAAGCTATCCGTACTACTTCATTGCGCAGGTGCTTAGTTCATGAG 1613014 25 100.0 48 ......................... AATTCATGAACCTTCGTGGTGTGATAGTATTCACAAACGTGCCATTCA 1613087 25 96.0 16 ......T.................. AAGCGTTGGCTAGTAT Deletion [1613128] 1613128 25 92.0 0 ........T.......G........ | T,T [1613141,1613150] ========== ====== ====== ====== ========================= ========================================================= ================== 35 25 99.7 45 GATATTCTCTAAAGAGAATAGAAGG # Left flank : ACCTGTCGCTTGATGAGTATAGGGTCCTCAGGTTAATTGGGCTTGGTAAGCACAGGGCTAAGGACATACATGGTGAGCTCAATAGGGATTGCAAGAGGCCAGGTGGGTGTGTATCCATGGCCACAGTCCAGAGGATCCTCGTGAAGCTCGTCAAAAAAGGACTAATTAACTATGAAAAGAGAGGTAAGGCTCATTACTATGAGTTAAAGCCCCTGGGATTAATGCTCGTTGGCAAGGTGGAGATCCAACGAGGTGAATCGTAGTTTAAAACATTACGTTAACGCTGTTAAGATATCTATTATTTGGAATTGAATATTTGAGACCGTGGGAAGACCTGCGTTTATGTGGGATTGAATGTAACCGTCAGAACATTTACTGCCTATGCCATGTGATCGTGGGAGCAGGGATGAGCCATGAATGTTCGTGGGCATTAATGTTCCGATGACAAACAAATCCATATGAAGAAAAACTTATAAATAAGTTTATAAAGCAATGTCTCA # Right flank : GTTATTTCTCCTACTTTGGGTTTGAGTCTGTGAAGTACGGTTATGAAGATTTTTAAGGAGGGTGGTTTATGGTGGGCATATGTCTTTGAAGTAGCAGGCTTTGCATTTTGCTTTGTTTGTGGTTTTTGGTGGTGGTTCTTGGTTTTGTATGTGTTTTTTCATGTCTTGGATTGTTCTTTTTATCCATGTTCTTAGGTTTGGTGTGGGTTTTATGGTTATTGTTGTTTGTTTTTCTTGGTTTATGATTATTATTTTGTCTACGGTGACTTTCATTGTTTCTTCGACTGCTATTGCGTATGCTGTTGCTTGGGCTAGTATGTGGTTGTATTTTGTGTATAGTTTTTTCTTGCTTCCTGTGTTTAGTTTTGTTTCTATGATTACCGCCCTATTTCCGTTTATTACCACGGCGTCTGTCCTGCCTACTATGCCGAGGCTTGTTGATTTTACTGGGGCTTCGAGTTTTACTTCTCCCTGTATTCCGAGTTCTTTTATTGTTTTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATTCTCTAAAGAGAATAGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.60,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 7 1946822-1947347 **** Predicted by CRISPRDetect 2.4 *** >NC_014537.1 Vulcanisaeta distributa DSM 14429, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================================== ================== 1946822 25 100.0 58 ......................... AAGTACTGGAATGTACCAATTAGGTTTGGCGCTGTGAATTGTAGGTTAAATGTCGATG 1946905 25 96.0 44 ..G...................... TATGTATTCATCCGTCGTTATCAACCTTCGCATGATTGCAGACC 1946974 25 100.0 47 ......................... TGCACAAATAAATTAATTGGGAGCCCAGTCACGAAGTTCCTACCAAT 1947046 25 100.0 41 ......................... TTCCATGGCTTCTTCCATGAATAGCCAAAGCTCATTAATTG 1947112 25 100.0 48 ......................... CTCCTTCTTCATCCTCAACGTCCTGTCCCACACGTATATTGCGTCCCT 1947185 25 100.0 44 ......................... ATTACATATTAATATGCGTCGTGCCTCGTACATTAAATTTATGA 1947254 25 100.0 44 ......................... TCCAGTGTAGCGCTTGCCCTGTTAACTGGCACTGGAACGCCTAA 1947323 25 96.0 0 .....A................... | ========== ====== ====== ====== ========================= ========================================================== ================== 8 25 99.0 47 GAAGATTTCAATAGAATATTGAAAG # Left flank : ACAATCAACCTCAATTAACGATTTACCCTCGACCTAACCTTCACATTTACCAACCGAATAGCCATCAATGCCCTCCTAAACAAAGAAAGATCCACGCCGTAGATCATTGACTTAAGCCCTCCTAACTAGGTGATCGAGACTCCCAAGACCATGACCTCACCAACACACATTGTGTAGGTTACCGTGCATTAATAAAAACATGGCATGTACGGTAACATGCGCGGTTTGGGGGGTGCATACCTCATGGGGTTGTGCGTGATTTAAAATTGCACTGTGTGTATGGTTTCGTGCACACTCACCGTTTTACAATGCATAAAACACCATTAGAACAGGCTCGGTTTTGGGGAGCTGAAATTCCGTGGGAACAACAATTCAATTCCACTTAAACACCGCGAGAACAAACACGAGCCACAGCAATTAAGAGCAGAAAGACGTTCCAACGGCACCAAAACACCAAGAAGAAAAAACTTAAAAAGACCCAAATAAACCAATGCACCGCG # Right flank : GAAAGACCTTAATCATGAAGTTATAGTGAAAGTCTGGGTGTAACCTTCGGTCGTCCCGGGGTTTATTAGGTAGCAAAGACTTATCAACTATTGGGTATTTACTTTACTTTGTGAGATATGTCATTGGTGCTGTCACCAACCATTACGGAATTCCTTAGGAAGTTGGCTGGTGATAGGGATGTTGAGGAGTTCATAGCTGAATTAATCGCTGAACGATTAGACCCTCCGCGCAGAATTGAACTGTACTTAAAACTTCATGGAGACTACCTTAGGGCCGCCGAGGAGCTTTATGCCAAGGGCGACCTGGCGCAGGCTAGTGAGAAGTACTGGGGCGCCGTGACGGCACTACTCAATGTCATCGCCGAGATGAGGGTTGGGGACACTACATCCATAGGGACTATGATGAGATAATTGATGGGTTGTATGAGGAGATTGGCGATAGGTCTATCATCCTTAACTTCAGCGTTGCCGAGAGGTTGCATGCCAATTTTTACCATAAC # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGATTTCAATAGAATATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 8 2061752-2060672 **** Predicted by CRISPRDetect 2.4 *** >NC_014537.1 Vulcanisaeta distributa DSM 14429, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================================== ================== 2061751 25 100.0 47 ......................... TCTAGCAACGTTGCTCTCTGTAACCTGAGCAACTAAAACAATTTCAC 2061679 25 100.0 45 ......................... GGAAATCCACACTTTATTGCCTCAGTGCAAATCATGGATGAAGAA 2061609 25 100.0 45 ......................... ATTAGTCTAACCCTACCTGGTGGTGGGGAGTGACCAGCAGGGAGG 2061539 25 100.0 41 ......................... GGTCACCCATGCCCAACCACGCATAGAACCATTTGCATGCC 2061473 25 100.0 40 ......................... CAAGCTCCCTACATGAAATTCCCTGGTAAACACCACAGTA 2061408 25 100.0 47 ......................... CTCTCGGGCATCATAATGATACCCTCCTCGAATTCACTACCCTCGTT 2061336 25 100.0 45 ......................... CTCGTGCCGAAGTCACTACCGCCACCACCAGTAAGCCAGCTCGAG 2061266 25 100.0 47 ......................... GGATTATTGGCAATGATGGTATTAATATAAGCCTCGTGGACTGCCAT 2061194 25 100.0 46 ......................... TTTCCTGTGTAGTTTCCTTAGGGTTAGTGCCAGGTTTATTCGCCTG 2061123 25 100.0 45 ......................... ACCTCATACTCATACGAAACCCCTTCAACCGCTGAAACCCTTATT 2061053 25 100.0 52 ......................... TCTTCTAACGTAACAAAACGCGTGCCATCCCATGGCGCGTAAATCTCAGCCT 2060976 25 100.0 49 ......................... CAGTCGTCGAGTTAACGGTTATTGCCTGCATCAAGTCAATCGTTATCAA 2060902 25 100.0 47 ......................... GCCACACTGCCCAGTAATGGTGATAACACGGTGTTGCTTAGACCCGC 2060830 25 100.0 40 ......................... CATTAAAACGTCATGTATCGTATTCAGCGTTAAAACCCAA 2060765 25 100.0 44 ......................... TTAGCATCATCAGCATAGAGCATATCCACATCGGGATTGGTGGG 2060696 25 88.0 0 .....................GTG. | ========== ====== ====== ====== ========================= ==================================================== ================== 16 25 99.2 45 GAAGATTTCAATAGAATATTGAAAG # Left flank : TTCCAGGGTATGAATGACAAGCCTATATGCTGCGTTATCATGCCGGGCTCCCTATAGGCTACGAAGGTGCCCCTTATCTTATCAAGGAGTAGTGTCTTGCCGACATCAACGTGGCCGACTACCACGGTGATCGGCGGCCTATAATCCACGAATGATGAATCAACCTTACTCATAACTACCTAGAATGAAGGGGGTAAACTTGATTTAAAAATCATTTTTCTCCTCAAGCAGTTAATCAACCCCACTTACCAAGTCATTGAACGAGCACTACGTGCATGGTTCGTTCGCGCATACTCATTATTTTGCAGTGTATAAGGCATCGTTGGAATAGTTGCGTTGTTGGGTAATTGAATGGTGCCGTGGGGACAAGTAATACCTGTCTCGTTGGGGGTCGTTGGAACAAGTGCGTGTCGTGGATGTTCATGGGGATTTATGTTCCAATGAAAATCAAGCAAGGGTAAAGGAAAAACTTAAAAATAACCAAATAAACCAACGCACCG # Right flank : TGTAGATAGGCTTAGTGTTGTCGTTTGGTAGGTTCTCTCTAGTGTTGGAGGGTCTCGATAGGGTGTTGGGGAACGTGATTTGTGGTGTTTTGTGTGGTTTCAGTCCCTGACCCAGCATTCATCGGTTTTCATCCGCCGCTGAAGTTTCATCACCGCAAAATACTATAAGTGGGCGCTTAAAAATGTATACTGAGGATGAGCCTGAGGGAGAGGCTTGTTAGGGCGTTAATTATCGTTTCTAAGGATGGTGTTTTTACACGTGAGTCACTTAAGGCGGTATCTAGTGTTAGTGATTCTGCGATTGAGGATTTCATTAATTCGCTAATGAGTGATGGGGTTTTGGTTAGGGTTGGTGATGGTTATAAGTCCGTCATGCCTCCACATAGGTTAATTAGGTATTTTGTGGGTAAGGGGTTGTTTATTGACCTTGAGTCTATATCGAGGTACTTGCCGTGGGATGAATTCGAGGCCTTAATTAGGTTGGTGTTTGAAGAGTGGGG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGATTTCAATAGAATATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 9 2188852-2189577 **** Predicted by CRISPRDetect 2.4 *** >NC_014537.1 Vulcanisaeta distributa DSM 14429, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================= ================== 2188852 25 100.0 42 ......................... ATACCTGCATATGCCCTAAACCTAACACGGTCATGGTTATGA 2188919 25 100.0 47 ......................... CTCTCGGGCATCATAATGATACCCTCCTCGAATTCACTACCCTCGTT 2188991 25 100.0 45 ......................... CTCGTGCCGAAGTCACTACCGCCACCACCAGTAAGCCAGCTCGAG 2189061 25 100.0 46 ......................... CTATTGATGATTATCCTGTCCTCAAAGATCTTGGACATTTTGAGGG 2189132 25 100.0 47 ......................... TTCTTGAGCACCGTGATTGACGAGGGGTAGTAGGGCAGGTAGTACTT 2189204 25 100.0 49 ......................... AGTACCTTGGCGATTGAGTCACCGAACATGGCATAACCCATGACCATCA 2189278 25 100.0 42 ......................... GTGATCCTCTACGTGAGTGGTGCCGGCGCCATCAAACCCGTC 2189345 25 100.0 45 ......................... CTTCGTGAGTACAAGAACCAATGCCTCGCTTCCTTTTGTCAACGT 2189415 25 100.0 43 ......................... AGTTCCTGTAACTTACTGGTCAGTGTTATGACTGCGTCTATTG 2189483 25 100.0 44 ......................... TTGATGTAGTCGTATAACGAGCACGCATAATTGCAATTCCTCAA 2189552 25 92.0 0 .............A....C...... | T [2189568] ========== ====== ====== ====== ========================= ================================================= ================== 11 25 99.3 45 GAAGATTTCAATAGAATATTGAAAG # Left flank : GTGGCAAGGTCCCTGGAGGTTGGTGAGGTCACGATAAACGACTTCCCAAGGCATGGACTCGGCCTATTCCCATTCGGCGGCGTGAAGGAGTCGGGGTTCGGCCGCGAGGGGATTGGGTTTAGCGTGGAGGACGTCACCGAGCTAAAGACCATAGTAATCACGTACAAATAACCAACATAACCTCACACAACTACCATTAAATCCCAAAACCAATAAATGAACAATCCTAATCAAGGGGAAAATACTGGCACAAGCCCAGGAAACCCGCGGACACCGCTAATCAACCCAAGGCTCAATTATCTACTGCTAAACGGCAAAATCATCGGAACAAGTGCATTGTTGGGTAATTGAATGGTGCCGTGGGGACAAGTAATACCTGTCTCGTTGGGGGTCGTTGGAACAAGTGCGTGTCGTGGATGTTCATGGGGATTTATGTTCCAATGAAAATCAAGCAAGGGTAAAGGAAAAACTTAAAAATAACCAAATAAACCAACGCACCG # Right flank : GAGTCCCGAGGTCCGCGTGGATTGATTGTGGAGGTTTTAGGCGCTTATTGAGGTGGTCCTTCCTTAGGGAGGGCTTGATTGCATAAACTTTAAAAATTATTGTTGAGAACGAACGCCGTATGAGAATTTACACGTGCGCCTTCTGTGGAAAGCCAATACCACCAGGCACTGGAATAATGTATGTTAGGGCCGATGGGACAGTACTTAGATTCTGCAGTAGGAAGTGCTTCGTGAGCGCGGTTAAGTATAACCGCGACCCAAGAAGGCTGGCCTGGGTAAGGAAGGAGACGAAGAAAGCCAAGGCACAGAAATGAGAGGACCTTTTAAGGAGGTCATCATTAGCTTGAGTGATGGTCATAGTCTACAGGGGCAGGCGTGTTACGTTGGACGTATCCAAGACAGTACTGCCAAATGGTCGTGAAATGAATGTGGAGAAGGTCTTATTTCCTCACGCTATAGCAGCATTACCGATATATGAAAGTAATAAGGTCGTATTACTA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGATTTCAATAGAATATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //