Array 1 2861780-2863027 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027677.1 Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2861780 29 100.0 32 ............................. TGCCTCAAGATTTTGAGCGGACGGGAGCTGGC 2861841 29 100.0 32 ............................. GATGCATGGGAGCACGGTAAACCACTGGCGCA 2861902 29 100.0 32 ............................. CGCATATAAAGCTGGCCTTACCGCTGGCTGGA 2861963 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 2862024 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 2862085 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 2862146 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 2862207 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 2862268 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 2862329 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 2862390 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 2862451 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 2862512 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 2862573 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 2862634 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 2862695 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 2862756 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 2862817 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 2862878 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 2862939 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 2863000 28 86.2 0 .........A..T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2879574-2883203 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027677.1 Salmonella enterica subsp. enterica serovar Corvallis strain 12-01738 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2879574 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 2879635 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 2879696 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 2879757 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 2879818 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 2879879 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 2879940 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 2880001 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 2880062 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 2880123 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 2880184 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 2880245 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 2880306 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 2880367 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 2880428 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 2880489 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 2880550 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 2880611 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 2880672 29 100.0 32 ............................. CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 2880733 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGCC 2880794 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 2880855 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 2880916 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 2880977 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 2881038 29 100.0 32 ............................. ACAGCTTGAACCGATTGAATTCGGACAGTTAT 2881099 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 2881160 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 2881221 29 100.0 32 ............................. TACAGTAAAACGCTAAACTTTTTTATTGTCGC 2881282 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 2881343 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 2881404 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 2881465 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 2881526 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 2881587 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 2881648 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 2881709 29 100.0 32 ............................. CAGCGACACCACCCGCCCGGGGACATTGCGCA 2881770 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 2881831 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 2881892 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 2881953 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 2882014 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 2882075 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 2882136 29 100.0 32 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGGT 2882197 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 2882258 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 2882319 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 2882380 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 2882441 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 2882502 29 100.0 32 ............................. GCCGGCGGCAGTGGTTAATATCAGAAATAAGG 2882563 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 2882624 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 2882685 29 100.0 32 ............................. GCGACCTGACTGAATCTCCTTTTTCAGTTGGG 2882746 29 100.0 32 ............................. GTCTTTTTCCCTGCCCATCTTTCAGCTTCTAA 2882807 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGAAATGATGGTC 2882868 29 100.0 32 ............................. CGGGGGTTTCCACTCAAATACAGGTAGAACCA 2882929 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 2882990 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 2883051 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 2883112 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 2883174 29 96.6 0 ............T................ | A [2883201] ========== ====== ====== ====== ============================= ================================= ================== 60 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //