Array 1 62428-60569 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUHV010000010.1 Escherichia coli strain Br10 10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62427 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 62366 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 62305 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 62244 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 62183 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 62122 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 62061 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 62000 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 61939 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 61878 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 61817 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 61756 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 61695 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 61634 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 61573 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 61512 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 61451 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 61390 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 61329 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 61268 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 61207 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 61146 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 61085 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 61024 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 60963 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 60902 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 60841 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 60780 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 60719 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 60658 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 60597 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 89071-88127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUHV010000010.1 Escherichia coli strain Br10 10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 89070 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 89009 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 88948 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 88887 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 88826 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 88765 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 88704 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 88643 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 88582 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 88521 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 88460 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 88399 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 88338 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 88277 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 88216 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 88155 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //