Array 1 1367191-1366295 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AP023391.1 Streptococcus suis strain DAT299 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
   1367190	    36	 100.0	    31	....................................	AGAGATTTGATTTCTTTTAACTCTTTGCTCA	
   1367123	    36	 100.0	    30	....................................	ACCACGAAATAGGCCATGAAGATCACGACC 	
   1367057	    36	 100.0	    30	....................................	CAGCATTCTCCATGAAAGCCTTGGCTTCCT 	
   1366991	    36	 100.0	    30	....................................	TGGACAGGCTGGCATTGTTGCTGATGTTTT 	
   1366925	    36	 100.0	    30	....................................	AAAATAGTATAATACTATTAGAAAGAATAA 	
   1366859	    36	 100.0	    30	....................................	TTGGTTCAATTCGTGATAATCACACTAGTC 	
   1366793	    36	 100.0	    30	....................................	CTTTTTAGACCGACACTAACTAACCTACTC 	
   1366727	    36	 100.0	    30	....................................	ACTCTATACTGGTGCTATCAACAATACAGA 	
   1366661	    36	 100.0	    30	....................................	GAGGCAGTTAGAGATTGCCAAAGCTGAGTA 	
   1366595	    36	 100.0	    30	....................................	CTCAACCATTCGGTCAAACCACATAGAGTA 	
   1366529	    36	 100.0	    30	....................................	CAAGCATTGCGGGCAATTAGCAGAATTGAT 	
   1366463	    36	 100.0	    30	....................................	ATAATTTCCAAAAAACCAATGATGCTTTGA 	
   1366397	    36	 100.0	    31	....................................	TTAACTTGCAACTAGATGAACCGTTGTCTAC	
   1366330	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
        14	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC	                               	       

# Left flank :   GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG
# Right flank :  TGTTAAAAGACAAATTGATAGGTTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTAATTTAAGCTTCATTTTTTTAGGATGAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCCACCCCCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGGATGATTGTTGGACTGGGAA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-2.80] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
//