Array 1 74595-73968 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEK01000011.1 Streptomyces avicenniae strain NRRL B-24776 contig11.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 74594 30 100.0 33 .............................. GCCAGCGAGACGCTGGACAGCTCCACGGTGCTG 74531 30 100.0 38 .............................. GTGAGCACGATCAACGTGTCCCGTGATCTCAACAGCAG 74463 30 100.0 37 .............................. GGGGGAGGTTGAGGTCTGCGCGGAGAACGGCCCACAG 74396 30 100.0 34 .............................. CCGCCGGGCTGAGGGTGGTCGAGCACAAGAGCTG 74332 30 100.0 39 .............................. CCGAACGGCCCCTGGCCGCAGTACCACCGAGGCTGCCGC 74263 30 100.0 38 .............................. GGGACTGCCGCGCGGTCATCCGGTACCTGACCCAGATG 74195 30 96.7 34 ................A............. GGCATCAGCAGATCAACCGCACCGATGCCGCCCG 74131 30 96.7 36 ................A............. CGCGGCACGGCGGGCGGGTCGAGCGATGCCCGGCGT 74065 30 96.7 38 ................A............. AGGGCCGGGGTCAGCGCGTCCACGAGCTGCACGGCGAG 73997 30 96.7 0 ..........................T... | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 98.7 36 GTCCTCATCACCCCAAGGTGGGTTCGCAAC # Left flank : ATATCGACCTCGACGTGCTCGACCCGGCGACCTTCAGCGCGGTCGGCGTGCCTGAGCCGGACGGCCTGTCCCCACGCGAACTCACCGACGCCGTGCGCGCACTCGGCACGCGGTTCAAGATCGCGGGAATCGGACTCACCGAACACCAACCGGACGACATCCGCTCCCCCGAGGACGACAAGGTACTCGACCTGCTCGCCGCGACAATGATGGACGTCATGCGCGACAACGACGCCCAAGGCGGACGCCAGTCGGCGGAAGGATCTGGCCCACGCGACGCATGATCGCGGCGCCGCGCGACTCCACAGGAACGAACAAGCTTCCTCGACCGTCGGCGCCGCGATGCACCGGTGCGATACGTTGCGCAGGCCCGGGACTTACGACGGCCGCACCCAAGGAGCGAGCCTCTGACCTGCACAGGTGCACTACCGACGGATTGCTGCACTTTCGACTCACACACGACCCCCGGGCCCCCCGCTGACCAGCGGCTTTACCCTCGG # Right flank : ACGCCGTCACAGTGCGCGTAGGGCATGATCGCGCCTCGCGCCATCGGCACACCGCGCTACCGTGACCGCCATGGAGGAAAACGACCTGCCCGATCGTGTTGATGAGGCCGACCTTCCGGAAGTACTCACGCGCGTTCTGGATCGCTCAGCGCGGGGCGGGGCCACCGTGATCACACGAGGTGGAGAGGCCATCGGCGCGGTGGTGTCCATGAACGACTACAACGTCGTGGAGGACGAGATCGACCGGCGGTTCGCCGAACGGGAACGACCGCCCGACGACGGAACCCGCCACGCATTGGATGGACTGATGGCCGGGGTCGAGAGCCAGCGGTAGGCAAGCCCCGGGGGCGTTCGAGGCGTGCGGGGCCGGTTCGTTCGATCTGTCGGCTGCTTATCCTTGGGGCCATGACCGCCGAGCTTCCGGAGCCCGCTCCGCGCCCCGAGTCCGCCCCGGCGCTCCGCGCCTCGCACGACGACAGGGACGCGGTGGTCGAGCAGTT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCACCCCAAGGTGGGTTCGCAAC # Alternate repeat : GTCCTCATCACCCCAAAGTGGGTTCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 79914-79623 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEK01000011.1 Streptomyces avicenniae strain NRRL B-24776 contig11.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 79913 30 100.0 39 .............................. CCATATCTCGGCCCGGAACTTTCATTTCGTACAATACGG 79844 30 100.0 33 .............................. TTCAGCGCGGCGTCGGTGATCGTCTGGATGGCC 79781 30 100.0 33 .............................. TTCGCGCCCCCAGATCTCCGCCTCCTCACCGGC 79718 30 100.0 36 .............................. ACTCCTCCGATTTCCGCGTACCGGTCCCGGGCCCTG 79652 30 93.3 0 ......................A......T | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 98.7 36 GTCCTCATCACCCCAAGGTGGGTTCGCAAC # Left flank : CGGTCGCCCAGGTGGCCCCCGCCGCGCTCGCCTCCACCTTCGCCACGTCGCTGGTCGGGGCTGGCACCTACGCCCTCCTGTCGCTGACCCACAGCGGCAACATCGCGCCCGACTGGTTCCTCGGGCTGGCGTGCGGGCTGGGCGGCCTGGTCGGCGGCTACGTCGGCGCGCGCCTCCAACCACGGATGCCCGAGACGTTCCTCCGGCTGCTGCTCGGCACCTTGGCCACGGCGCTCGGCGCCCTCTACGCGTTCAACGCGCTGCGGTGAGCGTGTGCGGATGCGCTCCCCTCGGATCGGGCGTTGTCGCATGAGCGCAGATTTCCCAACACCGGCATCACCGCCCCTCCGGGACCGATACGTTGCCAGCAGCACTCAACGAGACGAGGCCACACCAGGAGCAAGCCTCTGACCAGCACAGATGCACTACCGGCGGATCGCTGCACTTTCGGCTCACACACGGCCCCCGAGACCCCCGCTGACCAGCGGCTTTACCCTCGG # Right flank : CCCGAGCTGGTCGGCGAGCTCGCCGAAGGGGTGCGTGGTGGTGGACTCTCCCCCGAGGGGAGAGTCCACCATGAGGGCGTGCGAGACCAACTCCTCACCATCGGCCGCTTCGCGCGCCTCTGCCGCCTCAGCGTCAAGCAGTTGCGGCACTACGACGAGACGGGGCTCCTGGCGCCCGTGCACGTGGACGTCGGTTCCGGCTATCGCTACTACTCCCCCGCGCAGGCCCGTGACGCCCTGACCATCGCCCTCCTCCGCGAGATGGATCTCCCCTTGGCCGTGATCGCCCAGGCCCTGGCCGCCGAGCCGGAACCCCGGGCGGAGATCCTGCGTGCCGAGCGTGACCAACTGGCCGAGCGGATCAGCAGGGACCAGGCGCGGCTGGCGATGCTGGATCGGCTGGCGGAGGGCGGCCTGCCCGGCTACGAAGTGACGCGGGGCAGCGAGCCGGAACGGCGCGTGGCGGTGGTCCGGGCGGTCTGCGCGCCCGCCGACATCGG # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCACCCCAAGGTGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 220832-220564 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEK01000011.1 Streptomyces avicenniae strain NRRL B-24776 contig11.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 220831 29 86.2 32 ..G........A.C..........T.... ACGGCCGCGTAGCCGCCGATCATCTTCCGGTC 220770 29 100.0 32 ............................. GGCTGCTCGGCGCCCTGGGCGACGGCCTCGCG 220709 29 93.1 32 .....TT...................... CGCATCTCGTATCCGCCATGCGACCAGGCGCG 220648 29 89.7 28 ........................T.TT. GTCGTCCACATGGGCGGGGAAGGCGAAC 220591 28 55.2 0 TGGGCT.....A..A......-...AGGA | ========== ====== ====== ====== ============================= ================================ ================== 5 29 84.8 31 CTCCTCCCCGCGCACGCGGGGCTGCTCCC # Left flank : CGGCGGGCGAGGGACAATGGACGGCGACGCGGACCGGCGGGGGCCGGTCCCGGAGGGAGAGCCGTGGGATCAGGACACACCGTCGAGGCCGCGACCGTCGAGCGGCACGTGCGCGTGGAGATCGGCGGCCAGGTCGTCGCCGAGACGCGGCGGCCCGTGCTGCTCAAGGAGACCGGGCTCCCCGACCGCTGGTACATCCCCCCGGCCGACGTACGCCTCGACCTCCTCGCACCGGCTGACCTGCACACGACGTGCCCGTTCAAGGGCGAGGCGTCCTACTGGACGCTCCGCGGCGCCTCCCCCGACCGGACGGTGGCCTGGGCGTACCCGGAGCCGATCCCGTCGGTGGCGGTGATCAAGGACCACCTCGCCTTCTACGACCGCCAGGCGACGGTGACGGTCACACCGTGACCACCGCCGGACCGCCACCTCACGCGCGCACCAAAGGTGAGGTAAGCAAAATTCAGCACCCCCGCCCCTGAACCCGCAGGTCAATTACT # Right flank : GCGTGGAGCCGCCTGCTGGGCGACCGGTGGGGGTCGGGCAGCAGGCGGTGGGGGCGGATGCGCTCCGGTGGTCCTACAGCTTCCTGCCGGTTCCTCCCGTGGAGGTGATGTTCGCCGTGACGTCGCCGCCGACGTTCAGGGGTCCGTCGATGCTCGCGCCGTGCGCGATCCTGCCGTTCACCCGGCTGCCGACGCGCATGATGTTCTGGCCGTCCGAGTCCAGGAAGTCCGCGCCGCCCTTGATGTCCAGCCAGCCGCTGGGGTAGGTGTCGAACACCGGCCCTTGCACGTCGTTGACCGTGATCCCGCCCTCCACGACGAGCCGTTCCTTCACCAGCGCGCCGCCGGTGACCAGCTCGTTCAGATCCGCCTTGGCGGCGGAGACGGTGCCCCAGTCCTTGCCGGTCCCGTGGTACACGTCGATCCCGGAGTCGGGGAAGTCGATCCACCCCGAACTGTCGCTCCGCCCCCAGACCCACTTCGTGCGCACGCCGTTCACG # Questionable array : NO Score: 3.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.24, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCACGCGGGGCTGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [1,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 62237-61940 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEK01000001.1 Streptomyces avicenniae strain NRRL B-24776 contig1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 62236 30 100.0 38 .............................. ACGGCCTCATGAACGCGCACTGACCTGATGACCACCAC 62168 30 100.0 35 .............................. GGACGTCCATGGCCAGGGCCAGGTCTCCGATGCTG 62103 30 100.0 35 .............................. TTCAGCCGTCCCCACAGGGCGGGCTCGGAGTCGTC 62038 30 96.7 39 ......................A....... AGGACGCCCTGACTCAGACGCAACGGGTACAGCGGGCAG 61969 30 83.3 0 ..T.......T...G.........G....T | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 96.0 37 GTCCTCATCACCCCAAGGTGGGTTCGCAAC # Left flank : CGAGGCTGAGTTCCGCCCGCTCGGCCAACTGCTGCTGGGTGAGGCCGAGACCGAGCCGGAGGGCACGCAGCCGGTTCCCCGGTGGGCTGTCGTCGTTGCTCCGCATGACGGTCACCGTCCCTGCTGGTGGGCAAGCCACTTTCCAGCATAGGGCGGTGACTTCGCTGGCCGGGCGGTGCTCGACACCCCTGTCCGCTCCACGACGCACCGCCGCTCCCGATGGACTTCGCGGCGAGGTGGCGGGTTGAATGGTGGCGGTACGGAGGGTGCGGCGCGATCCGGGAAACCTGGGCGAGCACACCCGTGTGCGTGCGTTGCGCGCCTGCTTCGGTTGCCTGGGCCGACCGAGCCGAACCAGCCCGAGGCAGCCGACCGCCTGACAGAATGGACCGTGCTCCAGCACGCCTCTGACCAGCACCGATGCACTACCGGCGGATCGCTGCACTTTCCGCCTCGCACGAGCCCGCAAAGCACCGGCTCACCTGCGGCTTTACCCTCGG # Right flank : GACAGTGCCGGGCGGATCTGTGCTCGTCCCGTCAGGTCCTCGTCATCCCGATGAGCGTGGTCGGGGGTGTTGCTGGGTCAGCTGGCCGGGGTGCGGCCCAGGTAGGCGGCTAGTTTGTCGAGTGGTGTGGCGGTGTCGTGTGCTGGGTGTGGTGCGGCGAAGGATGCGCCGGGAGGGCGGGGTTGGTTGCCGTAGATCTCGTGGACGACGGGGAGTGCCGCCTCGGCGATGTGCTGCGGGACGTCGAAGGGGTGGCCGATGGCCTGGGCCAGGTCCCAGCCGTGCACCAGCATCTCGATCACCAGTTGTTCGACGATCCGCCGCCCCGGGGCCGGGCCGTAGCGTCGTTCCAGCATGCCGGGGCGGGCGAAGGCCCGCCGTGCGGCCCGGGAGGCGGCATCGAAGGCCGCGACGTGGTCGTCGCCCAGGTGGTCGGCGGTGAAGTCGGAGCGTGGGGTTCCCTCGGCGAGACCGGCCCACAGCAGGTTCTCCCAGACCAG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCACCCCAAGGTGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 282445-281879 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEK01000001.1 Streptomyces avicenniae strain NRRL B-24776 contig1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 282444 30 100.0 39 .............................. ACGAACCGGTTCCTGTGGCGCGACGGTGTGATCCAACGG 282375 30 100.0 39 .............................. TGGCCTACGGCTACGCGATGCAGGCCGACTGGTACACGG 282306 30 100.0 37 .............................. CGCCGGTCATCCACCGCAACAGCACAGGCCAGCCACC 282239 30 100.0 34 .............................. TTGTAGATATGCACGCCCGGCACGCCCTTGAGGA 282175 30 100.0 34 .............................. ACGGCCTCGGCCGCCTGGGCCTGCCGGTCGATGG 282111 30 100.0 37 .............................. CCCGGCGTGACCAGGGTCAGCCAGGAGGAGACGCCCC 282044 30 93.3 41 ................TG............ ATGGTGGAGAGCAGGAAGTTCGCGTAGGTCTTCCAGGTCGT 281973 30 86.7 35 .......G.....T..TG............ CTCCACGCGACATCTTCCGCGCGGACCAGCTCGGG 281908 29 93.3 0 ..................-.........G. | A [281894] ========== ====== ====== ====== ============================== ========================================= ================== 9 30 97.0 37 GTCGCTCATCACCCCTGAAGGGTTCGCAAC # Left flank : TACGTTGGAGTGGGGAGGGGCGCCGTCCCCTTCCTCGTCGCGCAGCAGCGTCATGGTTTCGCGCTGCTGCAACTCGTGCTCCTTGCCGGGAAGGAGGCTTGCGTGCAGCATCTCGAAGCCGGTCGCGGAGACACCACCGTGCCCACCGCCTCGCCAGGCCACCAGCACGCGATCGACGAAGGCCATCCCGATCAGGAGTATGACCAATCCGGGCAGCGTCATGAACACCACGAGTTCCACAGGGCACCCTCCCAGTCACGCACCAGTCTCCCGCATGGACGGCGCGGGAGGCAGGTGCGGTAAGTGGCCGCTTCCGGCGAGAAGTTGAGGCAGCTCCCCGGAAGCGATGCTTCACCGCACCTGACCGGGCAGAATGGACACGCGGCCGGAGGCCGACGCGCGCCCCTCTGACCAGCACAGATGCACTACCGCCGGTCCGCTGCAAAACTCCCTCTCCACCAGCGCCTCTCCACCCCAACGACCTGCGGCTTTACCCTCGG # Right flank : CGGGCCGGGAGATGTGACTTGCTGGGGGTGCTGGCCGCAGGGGGCTTGTCGGCGTGGGTGGGTTCGGGCTGGGGGTGATGAGGGGCGGCGTGGCGGTGGTGTGGGGCGTGGTCGGGGGTGGGTGCGGGGGTAGCTTTCCCGGCATGTATGCGATCTCGATTACCGAGCCAGGGGACGCCGACGTCCTGGTGTGGACGCAGGTGCCCGATCCCGAGGTGGGCGAGGGGGAGGTCCTGGTCGATGTGGTCTCGGCCGGGGTGAACCGTGCCGACGTGCTCCAGCGCCAGGGCCGGTACGCCCCGCCGCCCGGCACCTCGCCGTACCCGGGCCTTGAGTGCGCGGGCCGCGTGGCGGCGGTCGGGGCCGGGGTGAGCGGGTTCCACGTCGGCGACGAGGTGTGCGCGCTGCTGGGGGGCGGGGGCTACGCGGAGCTGGTCGCCGTGCCCGCCGGGCAGTTGCTGCCCGTCCCCGAGGGCATCGACCTCGTGACGGCCGGGGCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCATCACCCCTGAAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 157655-157220 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEK01000014.1 Streptomyces avicenniae strain NRRL B-24776 contig14.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 157654 31 90.3 36 G..C.C......................... CACCGGCACCGGGACGGGGGCGGCGGCGTGAGCACC 157587 30 93.5 40 G...................-.......... CGGTCCGTAAGGCTGTCACGTACACGCCGTGAAGTGTCGT 157517 31 100.0 37 ............................... CAGCCGTAGTACTGCGCGGCCAGGTCCCACGCCTCGG 157449 31 100.0 30 ............................... TCGTCGTCGTACCCCCGCAGCACCCCGAGG 157388 31 93.5 37 T.............T................ GTGATGGACCACGTGGGGCAGGGCTACGCCGGGATGA 157320 31 100.0 39 ............................... TCGACCACGCCCGCGCCCCGTACATGCGGCTCCTCTCCC 157250 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ======================================== ================== 7 31 96.8 37 CGTTGAGAACCCACCTTGGGGTGATGAGGAC # Left flank : TTGGTGGACGCCCGGAGAGCTGACGCGGTGGTGATGTCCTCGGCGAGCGTTTCCGGGCGGACGTCGGCGATCTGCGGGTGACGGTGGCGGCGGACCGCCGAACGGAGCGCATCGATCAGCTGGGGCGCGGGCGACTCGTCGTACGGCTGGCCGTAGAGGACCGACAGCGGGATGCCGAGGGCTCCCGCGATCGCCGCGGCGACCGCAGGGCGGCATGCCCGGTCGCCGATCTCGATCTTGGTCAGAAGGGACTTGGAGATCATCGCGCGGTCGGCCAGCTTCTGCTGACCCCATCCCCGCGCCTTCCGTTGGGTGGCGATGTTCCCGCCAACCGCTGTGGGTGCGTCGGCAGCGTCCATGCTCGTAGCCTTCCCACCGGGCTGATGAGGCACTGATCCACGGCCGATTCCGTCACCGAGTTGCTGCCCGCCCTCGAACGAGAAGACATACGCGGCCTTTTGGCGATGCCGCTCTCATCCTCCCCGTCGTCGCGTGCAGCA # Right flank : TACCCGAGGGTAAAGCCGCTGGTGAGGTGGTGTCTTCCGGGCTCGTGAGAGGCGGAAAGTACAGCGATCCGCTGGTAGTGCGTTTGCGCTGGTCAGAGATGTGCTGAAGCACCCTCCCACTGGTTCAGGTGAGTTGGCGGTCTCGGCTCCGTTCGGCCCTCTTCGGGCCGGACGGCATCCACCCTAAGTCCGCCTCGCGGGAGCGCCCGTCGTGGCGGATGTTCCGTTGTCGCGGCCGGTGTGGTCGGACGCGCCAGCGAGCGGTGTACCGGGGGCCAGCAGCGAATGTTCAGGCGTGCAGGTGGTGCAGAGGCAAGAGAGCGGCTGCCGTGTTGGCCGCTGGCACCTCGCCTCTGGTGATGAGGTCGGGAACCGTCTTGAGCGGTACCCAGTCACGACGGCTGGACTCGAAGACGTCCTGCGGATGGCCGACGTGTTCGGCCTCTGCGACCAGTAGACGTGGTGCCGCGCGTCGCTCAGCCCGTTGGACGGTTCGACGG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTTGAGAACCCACCTTGGGGTGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 2 160168-159806 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEK01000014.1 Streptomyces avicenniae strain NRRL B-24776 contig14.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 160167 30 93.3 36 A.............T............... CGGGCTGCTCCACGCCGACGCATCCGCCCTGCGGCC 160101 30 100.0 35 .............................. CCGGACCGCGCCGTCCCGGCTGGTGTGCTCGGTCT 160036 30 100.0 34 .............................. GGCAGCCGACGGCCCACCCATCCCCATCCCAGAC 159972 30 100.0 36 .............................. GCGCGGCCGGTATGTGATGCTCTGGCCGCTGTGGAC 159906 30 100.0 41 .............................. CGGCAGGGCCGGGACCTCCCCGGCCTCCATGACGTCCTCAC 159835 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 6 30 98.9 37 GTTGCGAACCCACCGTGGGGTGATGAGGAC # Left flank : ACATGCGGGTGGTGGAGTCGAGCACCTGGGCGGCCTCGTCGGCCTTGCTGGCGGTGGTGAGGTAGAGGTCCTCCTCGCCACGCCGATGCAGCCGGATGCCCTTGCGCGTACTGCCCTGCATGCGGGCGACGGTGTCCTTCGGCCGCTGGATCAGCTCGGAGAAGTTCGCCTCGGCATGGGTGACGGTCATAGCTGGAAGGTACTTCAAAAGTCGGGCCGCGTCCACGGACGCAGCCCGATCGGCTGGGGAAGTCTGTGCCGGGCGCGACGCCGTGACCAGCGATGTATCGCAAGGAGTGCCCTGCCTGTCACACATTCCTGTGGACGAGGTGTCCACGGCGATGCCTCCGACGCGACGCGCGAGGAGAAGCCGCCCGGCGCGCCGCGATCCGAGGCGCCGACCGCCCTACCCCACCGTCCGCCGCCCAGCACTGCCATCAACCCGCCTCGGGCTGATGAGGATGGAGAGGTGGGAGAAGCCTCGGCCTCGCACGACTGAT # Right flank : CCGAGGGTAAAGCCGCTGGTGAGGCGGTGCCTAGCGGGCTCGTGAGAGGCGGAAAGTGCAGCGATCCGCCGGTAGTGCATCTGTGCTGGTCAGACGTGTGCTGGAGCACCGGCCCATTGTGTCAGGCGAGTTGGCCGTCTCAGCCTCGTTCGGCGCCCTCGGGCCAGATGACGTCCACCTCAAGTCCCGCGTCGCGGGCCTCGGTCACCGTGGCGGCTGTGCCGCCGTGGCCGCCGGGTTGCATGGGCACGCCGTCCCAGACTGCCACGAACCGGTCCGCCCGGCGTAGCAGTTCCTTCCCGGCCGCCTCGTACGCCTCCCGGCTCGCCGTGTCGAACGGCATGACGACCACCTCGGACGCTGCCTCGACCAGCCGGTCGTACAGCTCCGCGTGCTGGAGCTTCACCTTCCGAGCCCGGTAATCCCGAGCCGGAGTGACCACCACCAGCCGACCACCCCGCTCCAACACCGCCTCAGCGAACAGGCTGTCCGTACCCGCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCACCGTGGGGTGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 60614-60023 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEK01000015.1 Streptomyces avicenniae strain NRRL B-24776 contig15.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================== ================== 60613 28 100.0 33 ............................ CTGCTCGGTCGTCTCGGCGACGATCCGGGCGGC 60552 28 100.0 33 ............................ CTCGGGGATCTACACCGGTGGCGAGGTCGGGAT 60491 28 96.4 33 .............G.............. CGATCCGTACACGGTGATGAATGGTCGCCCGAT 60430 28 92.9 33 .............G.......T...... CGCCAGCACCGTGTCGGCGCGGAACTGCGCCTC 60369 28 89.3 47 ............TG.......T...... CTGCCGCCACTCCGTCAGCGCGTACCTCCCGGGCGTGACGCGGATCG 60294 28 92.9 33 ..C..................T...... CGCCCACGCGCTGAGCCCGTGGTCCTGCGGTGT 60233 28 89.3 33 ..C......T...........T...... CCTCGCCGCCGAGCGTGACGTCAAGGGGGAGGT 60172 28 89.3 34 ..G..........G.......T...... CAGCAGCGTGAGGTGCAGGTCCTCGGGCGTGAGG 60110 28 82.1 33 ..G..........G.......A.AG... TGCTCCGGAGATCCAACTGGCGCGCGGCGGCTT 60049 27 78.6 0 .G.........GT-.......G..A... | ========== ====== ====== ====== ============================ =============================================== ================== 10 28 91.1 35 CTACTCCCCGCACACGCGGGGCTGTTCC # Left flank : GCCGCCGAGCACGACAAACCGCTCGCCGAAGGCGTGGCCCTGGTGCGCAAGCACGCGGCGACCGACGAGATCGCCTATGTCACCGGCCGCCCCGAACACCTGCGCGCCGACACGGAACGCTGGCTCGCCCGCCACGGCCTGCCGCCCGGCCGCCTCCTGATGCGCCGCGCCGGGGACCGGCGCCCCGCCCGCGTCGCCAAGCCGGAACTCCTCCGCGACCTCACGTGGGGCCGCGCCGTCTCCGTGGTCGTGGACGACGACCGCCAGGTCTGCCGCGCCTACCGCGACGCGGGCTTCCCCGTCCGCGTGGCGGACTGGTCGGACGCCCCCGAGCCGGTCCTCACCGAAGCCCAGGAACGCGAGGGCAGAACATGACAGCCACGCCCAGCCACCCGACTCACAGCACCACCGGCCCTCGCCGAGAGCCGACCGCCGAAAGCGGCGAAGGTAAAATAAGCAAAGTCGCACCTGACGGCCACTAAAACCCCAGGTCACTTGCT # Right flank : GATCTGGGCTGGCGAAATGGGCGCCTGGAGGGCGACTTCACCACGCGTCCCAGGGCCGCCCGCAGGGCGGGCCCCGGGATGAGGGCGCGGCGGGTTGGTGGCTGGTCAGCCCGTCGCGCGGGCCAGCGCGGCGGCTTCGCCGCCGGTGTCGCCGTCGTCGCCTCCGGCGTACGTCCGCCACAGCATCGCGTACCGTCCGCCCGCCGCGATCAGTTCGGCGTGCGTCCCGTCCTCCACGACGCGCCCGTGGTCCAGGACGACGACCCGGTCCGCCCGCGCCGCCGTCGTCAGCCGGTGCGCGACGACCAGCGTCGTGCGGCTGCCCGCGAGCCGTTCGGTGGCGGCGGTGACCAGGGCCTCGGTGGCCAGGTCGAGCGCGGCCGTCGCCTCGTCCAGAAGCAGGATGTCCGGCCCCACCAGCTCCGCCCGCGCCAGCGCGATGAGCTGCCGCTGCCCGGCCGACAGGTTCCGGCCGCGTTCGGCGACCGGATGCAGGTAGC # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTCCCCGCACACGCGGGGCTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCACACGCGGGGCTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 305651-306012 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEK01000003.1 Streptomyces avicenniae strain NRRL B-24776 contig3.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 305651 30 96.7 33 .........................A.... GCGAACGGCTGGGGCCGTTCGCCCACCGGGCCC 305714 30 100.0 37 .............................. CGACCCCGTTCTGCATGTGCTGCGAGGCGCACGACGG 305781 30 100.0 35 .............................. CGGAGCTGCTCCTTCATGCGCTGGAGCGCCTGCTT 305846 30 90.0 36 .C........C....T.............. CATGGAGCCGATTCCGGACCGCGAGCAGTACCTCGC 305912 30 90.0 41 ..........C....TA............. GTCCACTGCGGCCCCGGGCCGGACGGGTACCGGCCGCACCC 305983 30 83.3 0 ...............T......G.TC.G.. | ========== ====== ====== ====== ============================== ========================================= ================== 6 30 93.3 37 GTCGTCATCGATCCCCGGAGGGATCGCAAC # Left flank : GACGTTGGTGCCCATGGTGAAACCTCACGTGATGGCAGGGTGGAGCGCGCCCGGAGAAGAGGCGAGGGCGCGCGGGAACGCACCTCCCGGGAAAAGGGGAGGTGGGGGCGATGCGTGACGTTGAACGCACCGCGCCATGGGGCCGCCGCCGTGAAACGGGCGGACGGGGTCCACCGGTGAGCCGGACTACCGCAGGAGGGCAGACGGCTCAGTGCCGAAGGCGGCCACTGGGGGCTGCCGTGATCAAAGGCTTCAGTCCTTGAAGGTGAGGTGTCGAGCTGAGTTCCGGGGCACTCTCGCACGGCGGTGGGGCGGGAGGCAAGCTCAATTGGCCGATGGCCAGGTGATCTTGGGGGCACAGTGGGGATAATCACCTCATGGCCGGACCACGAGGCCACCGTACGCCTCTGACCAGCACAGCTGCACTACCGCCGGATCGCTGCAACCCACCCCCGAACCGGGCCCGGCGGGCACGGGTTGACCAGGGACTTTACCCTTGG # Right flank : CCTCACCAGAGTGACGGACGCAAGGTGCGAGTCTCCCGCGCCGCCAGGCTGACGCCCGGCCGGTCGTTATCCACCGCCAGCAGGAGTTGCTTGCAGGCGATAGCTTGCGGAGCATGGCGAGGACCCATGTGAATCTCGGACTCGAAGAGTCCGTAGCCGAAATGGCGCGGCAGGCTGCGGAGACTCGGCATGTGCCGGTGAACGAGTATGTCGAGCAGCTGATCCGTGCGGACAACGAGAAGTTCCGCACGGACTTCCTGGCTGGTGCCCAAGAGGTACTGGACTCCTACGGTGACCTGATCGACGGGATCGAGGCCACTGCGTGAACCCGTAGGTCGATTTGTCGTGGATCCCGGTGGTCGCCCACCGAGCCGGGGTGACACTTCCTGCGGAGGCCCGCCAAGCGGGCGCTCTCGGCCCACGGCTCGTCGCACCGCCGCACGTCTGTCAGGGAGTAGCGGCCTCCCGTCCGGCCAAGGCGCGTACGCGGGCAGGGTTGT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCGATCCCCGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 160488-158683 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEK01000004.1 Streptomyces avicenniae strain NRRL B-24776 contig4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 160487 37 100.0 38 ..................................... CGCAGCAGTGCATCACCCAGTCCCCGGCCGGGCACGTC 160412 37 100.0 35 ..................................... GCGGCCTCTTCCGCCGACGTCGCGCTCACCGGATC 160340 37 100.0 38 ..................................... TCCGACACCTGCGCCGCCGCCCGCGCGCTGCTGTAGTG 160265 37 100.0 35 ..................................... ACCGCCTCGACGCGGGTCTACATTGCGCGGGAGCG 160193 37 100.0 36 ..................................... TCTCGCTGGTCAGTTGGCGGTTGCGGTCTGCTGCTG 160120 37 100.0 37 ..................................... TCCGGCGCCGACGAGGAGCCGGAGCATTGAGCGGGCG 160046 37 100.0 37 ..................................... GTCGTCTCCACGGCCCGGCCGCCCGTACCGGAGAGAT 159972 37 100.0 38 ..................................... GTCATGGACACAGGGTAGGGCGGAGGGTCGGATGCCGA 159897 37 100.0 38 ..................................... GACCGCCGCACCGTCGGCCGCGCCGACGTCCTCGCCTG 159822 37 100.0 37 ..................................... GGCAGGTCGTCCCAGCCGAGGCCGAGGCGACGGGCCT 159748 37 100.0 38 ..................................... CCCTCCGTCAAGCTCCGCATCATCGGCATCGAGATCGC 159673 37 100.0 39 ..................................... GCCGTCCTGGCGCGCGAGGTCGTACCAGCCGCGCAGCCT 159597 37 100.0 38 ..................................... GCGCCGCCGAAGGGCAACAAGGAGAGATCCGCACCATG 159522 37 100.0 35 ..................................... GTCTCCATGGCGCTGCCGGGGTACTTCGAGCCGTA 159450 37 100.0 37 ..................................... TCCTCCGGCTCCTCGTCGGCGGGGGGCGCGGGCGGGG 159376 37 100.0 38 ..................................... GCGCACCTCCTCGTCGAGGATGTGCCGCCAGGTGACGG 159301 37 100.0 35 ..................................... TCGGGGTGCTCTTCGGCCATCGCCGCTTCCAGGCA 159229 37 100.0 35 ..................................... GTCGTCCTCACCACCCTCGCGTGCGGGCTGGAGCG 159157 37 100.0 36 ..................................... CTGGTGAGCGCGGTCCCGGGCTGGCTGCTGCGGCAC 159084 37 100.0 36 ..................................... TCGGCCCGTCCGGTGAACGAGCGCAGTGCCGACGTC 159011 37 94.6 38 ..............T.......G.............. GCGCCAGGTCGGCTCGTACGGCTCAAGGGGGAGGAGCG 158936 37 94.6 35 ..............T.......G.............. TCCCATTCGGAGACATAGACGCGCAGGCTTGCCAG 158864 37 100.0 36 ..................................... GAGGTAGCCCGGTTGCGGCGTGATCGTCAGCATGTG 158791 37 100.0 35 ..................................... CCCAGACGGAACGCGACGAAGCGTCCCGCCGGGAT 158719 37 86.5 0 ..............A.......G......GG.....T | ========== ====== ====== ====== ===================================== ======================================= ================== 25 37 99.0 37 GTGGCGGTCGTCCCCCGGGACGACCGAGGATCGCAAC # Left flank : GGGTGGGCCGCTCGGGCACGCGCGCACGCTCCCCGATGGGGAGTTGATCCCCGCGGCGACCGTCGTCGGGAGGGGGAGCGGGAGCGTCCCGAGCACCTGCGAACACCGCGCGCCTCCGTACCAGGCCGCGAGGAAGCTCCGGCCGCCGAGCCCTCTCCACCCTGTCAACCAGGCTGGATTGCCGAGCGGGCCGCTTCCCCCGAGTCGTGGACCAGCACTGGACGCATGCCCGACCGACCGGACGAGCCAGCGCCACGGCCGCTGCCGCGCCCGCAGTTCGCCGGATTCACGCGCCGAAGGCTCCCCGTCGGCAGCTACGCTTCCCGAGACACCGACCGTAACGTGTCCCTATACCCCTGCCTGCTTGAGGACTTCGGAACCTCCGGTGTGCCGAGAAAACCCGGATCGCACCGAAGGGAGATGCCCGATTGATGAACCTTTCGCCCCCCGAGAGCCGCCCCACACCGACTACGCTGGGCGAAACAGGCCGGTGAACGGCC # Right flank : CTGCTGGTGGTGTTGAGGACGAAGTGGCGTGTGTGCAGGGGCTGGTCGGACCGGCGAGGGCGGGCGAGGGGATGCTCGGGGTCAGGTTCCCGGGTCGGACGCGTGGAGTGACGAGGCCGCCCGTACCTGCGCGTAGGAAGGGGCGTCGAGGTCCGTCGGCCGGTCGGCGCGGAGGTCGGTCGCGAGGGTCACGGCCGCCGCCAGCGCCCTGCGGTAGAGCAGCGAGCCGAGGCTGATCCTGCGCACGCCGAGCGCGGCCAGCTCGGTGAGGCTCGGGCCGGTCGGCGCGTACAGGATGTTGAGCGGCACGACGAGGGTGCCCAGCAGGGCGCCGATCGCGTCCAGGTCTGACAGGCCAGGCACGAACACCCCGTCGGCTCCCGCCTGTTCGTACACCGCGAGGCGCTCCGCGGTCCGCTTCTCCTCGCGTCCGAGCCAGTGCGTGTCGGTGCGGGCGTTCACGAACAGCTCGGGTGCGCGGGCCTTGACCGCGGCGATCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGTCCCCCGGGACGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGTCCTTCGGGACGACCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.70,-15.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6694-7979 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEK01000017.1 Streptomyces avicenniae strain NRRL B-24776 contig17.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 6694 37 100.0 38 ..................................... CGGTGGTGAGGGTAACGGTTGGTGCGGTGGCGCGTCGG 6769 37 100.0 36 ..................................... GTCGAAGCGCCGCGCGACTGCCACGCCGTCGCCAGC 6842 37 100.0 37 ..................................... GACTCGCTGAGCCTCGGCGGCCGCCTGGCGCTGGAGT 6916 37 100.0 36 ..................................... GTGCCCGGCCTGCTGGAGGTCCCAGGTCAGGTCGTG 6989 37 100.0 38 ..................................... TCGGTGCCCTGCCAGCCCCCGTACGCCGACTTGCGACG 7064 37 100.0 40 ..................................... GCTGGGGCGTTCGGGCGCGATGTCGGGGAGGGCTTTCCAG 7141 37 100.0 35 ..................................... GGGTTGCCCCAGCGGGAGCCCCTGCCGACGTACTT 7213 37 100.0 34 ..................................... GGCCGCGTGCACGAGCTGGTCGGCGGCCTGACCC 7284 37 100.0 35 ..................................... GCCATGCTGGTCCTCTCACCTGCGGCGACACATCG 7356 37 100.0 37 ..................................... GAACTGAAGGAGGCTCTCGGCTACCGCGCCAACGGGG 7430 37 100.0 42 ..................................... CTGCACGTAGGCCCAGCCGACGCCGAGACCGGCTCCCGTGGA 7509 37 100.0 38 ..................................... TCGCCAAGGCCGAGGAGTGGACCCACCCGGGCGAGGGC 7584 37 100.0 33 ..................................... CTGTCCGTTCGGGTCATCTCGGTGAGGGTGCGG 7654 37 100.0 36 ..................................... TCTCCTACGAGCGCATCATCGGCATGGCGGCCCGCG 7727 37 100.0 37 ..................................... GAGTCGTCGCTGCGGCAGGTGTCCACCACCCTGGGCC 7801 37 97.3 36 ............T........................ GCCTCGGCCTCCGCCGCGTCGGCCGGGGTCTGGCAG 7874 37 97.3 34 ...........T......................... CTCCGGCTGACGGCGACTTGGTGATGGGTGAGGT 7945 35 78.4 0 ..A................AT.G.C..A.-..-.... | ========== ====== ====== ====== ===================================== ========================================== ================== 18 37 98.5 37 GTGGCGGTCGCCCTCCGGGGCGACTGAGGATCGCAAC # Left flank : CCCGCTGGACGACGTGCTCGACGCGGCGGGGCTGCGACGCCACGTCGCGGCCGTCGTCCCGACGTTCGCCGCCGCGCTGCTGATCGCGTCGAGCCGTTACGTGGGCCTCGTCCCCCAGCGGCTCGCGGAACAGTACGGCCCGGCGCTGGGCCTGCGGTGGTTCCCGATCCCCGCCGACCTGCCGCCCCTCGACGTACGCCTGCTCTGGCACGCACGCCTCGACGCGGACCCGGCCCAGCGCTGGCTACGCGACACAATCCGCGCAACGCTCTCCTGACCCCCGCTTCCGAACGCACGCGAACCCCGCCGGGCACCACGCGCCGCCGCTAGGCTCGCGATGCGAAAGCACCTCACGGACAGCTCCGAGCCAGGTTCGGAACCTGAAGCGTGCCCACGACACGCACATCGCGCCGAAGAAAAAAGTCCGGTATCAGCAGAACTCGTGGCACAGGCACCCGATCTACTCAGCTACGCTCCGCACAACACACAGCTCAACGACA # Right flank : CCGGTCCCCCAAAGGACAACTGGCTGGCCCCGCCGCGCCCCTCGCGGGCGACCGCCGCATCAGTGCAGGCAGTAGGCGTGCGCCCGTGCCCGCGTGCGCGGGGCGCACGCCTGATGCCACGTGCGGGTGACACCGAACGTATCCCCCGACATTCGGGAACGCGATCCGCCATCGTGCTCGCGTGGTCCCTCGTCGTCTGCCGGGCCCGGCGGGCGGGGAGGGGCGCGTTCGTGCTGTCCGCTTCCGGTCCGGCAGCGGAGCACATCGCCGATCCGAACCAAGAGGGAGTACTCGCTGTGCCTTTGTCGCCTGCGAACGTCAGGGAAGAACTCGACGCCGCGAATCAGGTCGGTGACCCGGCCGCCGACGCGCTTGTGGCGGACCTGCTCGCCGACGGGGAGATCGACGGGGTCAACGCCCTGTTCCGCACCATCGGGACGCTGAAGCCCCACCAGGACCTCTCGCGCCTGCCCGAACGACTCGCGCAGTTCCTGCACGAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGACTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-16.40,-13.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 18193-20424 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEK01000017.1 Streptomyces avicenniae strain NRRL B-24776 contig17.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 18193 37 100.0 35 ..................................... TCCCAGAGGACAGCTCTGGCGGCCGGGGAAGGCCG 18265 37 100.0 36 ..................................... CGTCCGCCGTCACCGGTGCTCAGCACCTTCTCCAAC 18338 37 100.0 35 ..................................... GAGGAGGCCGGGGTCGTCCGCCGCGCCCGGCCAGG 18410 37 100.0 33 ..................................... TGGGTAGTCTGTTCATCGGCCATGCGGGGTGTC 18480 37 100.0 35 ..................................... CGCGTCCTGTCCCCCGACGCGTTCACCGCCACGTA 18552 37 100.0 34 ..................................... CCCCGCCGCCGCACCGAACAGGTCACCGCGTCGA 18623 37 100.0 39 ..................................... ATGGCGGCGAGGGCCTTGCCTGCGGCCCGGCCGCCCGTG 18699 37 100.0 35 ..................................... ACCGGCTTGCGGCACCACGCGCACAGGCGCTCGGG 18771 37 100.0 36 ..................................... ATCGACGGCAAGGGCGAGGAGGCGAACACCTGGGAG 18844 37 100.0 37 ..................................... ATCGACGGCAAGGGCGAGGAGGCGAACACCTGGGAGC 18918 37 100.0 37 ..................................... CTACACGGACTCGGGGCCGCGCTCGCCCGGGTCCTGG 18992 37 100.0 35 ..................................... CGGCGCTGGCGCTCACTCGGCGGCTGCTATCCGGC 19064 37 100.0 34 ..................................... CCGGCCCTCCGCGCCTTTGTCTCCGGGCAGACCC 19135 37 100.0 39 ..................................... ACGTCCAGGAGCGCGATCTCCGACAGGATGGACCAGGGG 19211 37 100.0 36 ..................................... ATCGCGAACGCTCGCCAATTGGTGAGCGAGACGCCC 19284 37 100.0 35 ..................................... CCAGCGTCGGTGCTGGTGTCGCCGTCGCTGCTGCT 19356 37 100.0 38 ..................................... GGCATTCCCGAGGAGGTGCGATGCCTCCCAGGCTCGTG 19431 37 100.0 37 ..................................... TCGGTGGTGGGGGCGGGCCGGTGGTCCGGTCTGCCTG 19505 37 100.0 38 ..................................... GGCTACACGAACCCGTTCGTCCTCCAGTGCTGGGCCGA 19580 37 100.0 35 ..................................... TTTCCGTGTCCCATGCCAGTCGGCGGAGGTCGGTG 19652 37 100.0 37 ..................................... TGGTGCCGCTGTGGAGCCCACAGGGAGGCAAGGGCGG 19726 37 100.0 36 ..................................... CCCCCGGCCCACGGCTCCCGGCACTCAGGCCTGCCC 19799 37 100.0 35 ..................................... ACCGCGATGGGGACGACGATGCCCGCGACGGCGAC 19871 37 100.0 37 ..................................... GAGCCGAGGTGCAGGACCGGGACGGGGAACTCTCCTC 19945 37 100.0 37 ..................................... GTCCTGCCGCCCGGCGCGGCGCAGCTAGTGTTCCGCG 20019 37 100.0 38 ..................................... CTCTTGGTGCTCTGGTGCTTGCGTTCTGGGGTCCGGAT 20094 37 100.0 35 ..................................... ACGACCGCGCGCTCCGTCTTCGTACGGACGTCCTC 20166 37 100.0 37 ..................................... GTAGCGGGTGCGGCAGCGGCGGCAGGTGATGGCGGTG 20240 37 97.3 35 ................G.................... CTCCATGCGCGCGGCGGCTTCCTTGCTCGGAGGCG 20312 37 97.3 39 ................G.................... TCTCGCATTTCGAAGACCGTGCGGTACAAATTGAGGGGC 20388 37 89.2 0 ................G...........AG....G.. | ========== ====== ====== ====== ===================================== ======================================= ================== 31 37 99.5 36 GTGGCGGTCGTCCTCCAGGACGGCCGGGGATCGCAAC # Left flank : GCAGCGAACTGCTTGCCTGTGTACCGGGCGGCGAGAAAGGCCCCGGCCTCCTTGTGGGGGACACCCACACGGCCGCCGGTCCTCTCCGCTCTGTCAACCAGACCGGCTTGCCAGGCGCAGGCCGCCTTGCCCACGTCGTGGACCAGCGCCAGGTACTCGGCCAGTTCGGCCGCCCCGAACGCTTCGCCGAACTGACGAGCCAGCGCGGCTGTCCCCCGGAGGTGTTCCTCCAAGGTGTGCCGCCGCAGGGAAACCGGACTTCGGCTGTGCGCCCACAGTTCGTTGGATTCACGGCTCCGAGGGTCATCATCAGCAGCTACGCTTCCCATGACGCCGACCGTAGCGTCCCTATACCCCTGTGTGCCCGAGGACTTCGGAACCTCCAGTGTGCCCAGAAAACACGGATCGCACCGAAGAGAGATGTCCGGTTCATGAATCTTTCGTCTCCCCGAGAGCCGAGCACACCGACTACGCTGGGCGAAACAGGCCGGTGAATGGCC # Right flank : CCCCGACGGCACGACCGTTTCCACTGGAAACGGGAGGCGGGCGTTGGTCGGGTGGTTGGGGAGCGTGGTGTCCGGTTCTTCCGGAGGCGCGATGTCGCTGGGAAATGGCGACTGACCGTGTGTATCGGGTGCTTGTCCGGGGTGCGGGCGCGCTGCACGCCGAGTCCGGGGAGACTCCCTGGGCTCCCTCAGAGCCCGATCGACGGCCCGGGAACCCGCGTCGCCGCAGGTCAGGCGTGGGCGGCGGACGAGGCGGCCTGTACGCCGGGTTCTGTCGCCCCGGGGCCTTGCGGCGCCCGGGGGAGGCGGCCATCCATCTAGGGCCGGTGTCGCCACCGGCCTCGTGCGGTCCACCCGCGGACTCGGGCGGGCAGCCCTCGGTCATCCGCGCAGGGCCGCCGCGAGGCGGCCCCTTTTGACCTTGCTCCAGGTGGGGTTTACCGAGCCGCCCAGGTCACCCTGGGCGCTGGTGGTCTCTTACACCACCGTTTCACCCTTAC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGTCCTCCAGGACGGCCGGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.40,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 69643-69015 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEK01000017.1 Streptomyces avicenniae strain NRRL B-24776 contig17.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 69642 30 96.7 35 ...............A.............. ACCTGATTGAAGAAGTCCGGGTTGGGGCCGTCCGC 69577 30 96.7 36 ...............A.............. CGCAACTTCTTGACGTAGTCCCTCTCGGTCTGGATG 69511 30 96.7 37 ...............A.............. GGGGAGTTGAAGAAGTTCATGGGCGGACTCCGGTCAG 69444 30 100.0 37 .............................. ATGCGCTGCGGCGGGCCCTGATCCGTACGGCGCAGTG 69377 30 100.0 38 .............................. GCTGGCCGCGGATCGGCGTCGAGGCGCTTGAGCAGCGC 69309 30 100.0 36 .............................. CCGGTAGAGCCGGGCTCGGACGTGGCGGAGGAAGAA 69243 30 100.0 34 .............................. CCGACGAACGCCTCGGCGTGATCAGCTCCGATCT 69179 30 100.0 34 .............................. GTGCAGCCGATCCGGCGGGCGATGGCCCGATCCG 69115 30 96.7 40 ...............A.............. ATGTATCGGACCTGCACGGGGGCGAGGGTCCGTCTGCCGT 69045 30 80.0 0 ..........GA...GC..........CG. | A [69020] ========== ====== ====== ====== ============================== ======================================== ================== 10 30 96.7 36 GTCGTCATCAACCCACGGTGGGTTCGCAAC # Left flank : CGCGAGGGCGTCGGGGCGGAGGTCGTGCCTGGTCAGGAAGGCCGTCAGGGCGTCGGCGTCGGGCAGCGCCTCGCCTTCGGTGGCCCGCACGGTGGGCGACGTGCACACGAGCGCGGTCGCGACCGCGGCCCCGCGCGCGTAGTCGCCGAGCGGGAACTCCATGCCGTGCTCCTCTCGTCGGTAACCTGTGTAGCGGCAATATAGCGGTTACGGGCGCGCGCGGGAGCCGGGCCGGGCCGGGGTGCACGATCCGCGCCACGACCACGGACGCCGACACCGCCGCACCTCGTCGGCCGGGCACACCCTGATCTCCGCCGTGCCCTCGCCCGCTGACGCCGCCCGCGCTGTTCGGGTACGTTGTCCGGACGGCTCGACAGCGCGCTGCCGCTCCGGGGGGGAGCAAGCCTCTGACCAGCACTGATGCACTACCGGCGGATCGCTGCACTTCCGCCGCGAAAACGGCCCGCAACCCCCGGGCTGACCAGCGGCTTTACCCTCGG # Right flank : GTGGTGAGGTGTGCTGCGAGGAGGGTGAAGGCCGGGGGTGGGGGCGTCGGGGTGTGTCAGAGCCTGTGATTTCGGTGCGGGTGGGCTCGGGCACACTGCCTGCATGGCGTTCATCGACGGCCGCCCGGCCACCGCGGAGGACCTGGCCGCGCTCGGGCTCACCAACTACGGCCACTACACGAGCATGCTGGTCACCGACGGGCGGGTGCGCGGTCTCGGGCTGCACCTGGAGCGGCTGGTCAGGGACTGCCGCGCGGTGTTCGGCGCCGATCTCGACCCCGGCCGCGTCCGCGCGTACGCGGGGGCGGCGGCGCGGGCCGGGAGCGGTACGTTCGTCGTGCGGGTCACGGTCTACGACCCCGCCATCGGCCTGGCCACCACGCACCGGCGCGGGGAGCCGCACGTCCTGGTCACCGTCCGTCCCGCCGGGGGGACGGACGCGCCGCCGCTGCGCGTGCGGCCCGTGCCGTTCCAGCGCGACGTCCCCGAGGTGAAGCACA # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCAACCCACGGTGGGTTCGCAAC # Alternate repeat : GTCGTCATCAACCCAAGGTGGGTTCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 4 78553-77863 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEK01000017.1 Streptomyces avicenniae strain NRRL B-24776 contig17.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 78552 30 100.0 37 .............................. TCGTGCCGGTGCGCGCCGGTGACGGCGCCGAGGTGCC 78485 30 100.0 37 .............................. GCGAGCTGGCGGAGGCGGTGTTCGGCGGCGCCGGGCT 78418 30 100.0 38 .............................. TGGACGCCCTTGTTCTTGAACGCGGTGCCGCAGAACAC 78350 30 100.0 34 .............................. GTCGGCCTGGGGGTCGGGTCCGGGGGCGGCGTAG 78286 30 100.0 38 .............................. GGCAGCACGGCATGGTCCAGGACGGCGCGGATGTCCAG 78218 30 100.0 34 .............................. AGGTCCCCCGCTTCCGCCCGCGCGTACGCGTCCG 78154 30 100.0 35 .............................. CGCGGCAGACGAGCGGCGCGTGGTCGATCCGTCCG 78089 30 96.7 34 ...........T.................. AGGTCCACATGAGCCGACCCGGCGTAGACGTAGC 78025 30 96.7 39 ..........................G... GCCGGTCGGGAGGACCCGGGCGGCGACGGCGGTCACGGT 77956 30 83.3 35 ...A...........G.C........G..T ATGCACGGCTTGTCGGTACCCGCGATGACCTCGGG 77891 29 83.3 0 ..-.......G....T............GA | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 96.4 36 GTCGTCATCACCCCAAGGTGGGTTCGCAAC # Left flank : CGACATCGTCGCGGCGCGGTTGCTCGCCGGGACGTGGCGGGGGCGGTTGGTCCGGGCGATCCACGGCCCGGAGGATCTGACGTGGAAGGCCGTGGCGGAGAACCTGTCCGGCGCGCTGGGACGGCCGGTCGAGCTGCGGGTCGTCAGCGACGACGACGTGCGGCGGTCGCTGCGCGCGGCGGGTCTGTCGGCGGATGCGGCCGAGAGCGTGGTCGGCATGACGGCCGGGCTGCGCGGCCTCGTCCCCGAACAGCCTCGGACCCCGATCACCACAACGCCATCCGACCTGGCCGGCTGGGCATACACCCACCTCCGGCCCGCGCTTGCCCGCTGACGCCGCCCGTGCTGTTCCGGTACGTTGTCGGGGCGGCTCGACAGTGAGCTGCCGCTCCGGGGGGAGCAAGTCTCTGACCAGCGCAGATGCACTACCGGCGGATCGCTGCACTTCCGCCGCGAAAACCACCCGCAACCCCCGGGCTGACCAGCGGCTTTACCCTCGG # Right flank : TGGGGGCGAAGGGGTGGGTCAGAGGTCGAGGCGGGAGGGGTCGAGGGTTGGGGCGGACTGTGCGAGGAATGCCTTGCGGGGTCCGACGTCGTTGCCCATCAGCAGGTCGAAGACCTGCTCCGCCGCCTCCAGGTCGGCGACGTTGATGCGGCGCAGCGTGCGGTGCCGCGGGGCCATCGTCGTCTCGGCCAGCTGGTCGGCGTCCATCTCGCCCAGCCCCTTGTAGCGCTGGACGGACTCCTTGTACCGGACGCCGGTGCTCCTGAACTCCGTCAGCCGCTCGCGCAGTTCGCGGTCCGAGTACGTGTAGACGTACTTCTCCCGGCCCTTCCCCGGCTGGACCAGCTCGACGCGGTGGAGCGGCGGAACCGCCGTGAAGACCCGTCCGGCCTCGACCAGCGGTCTCATGTAGCGGTGGAACAGGGTGAGCAGCAGGGTGCGGATGTGGGAGCCGTCCACGTCGGCGTCGGTCATCATGATGATCTTGCCGTACCTGGCCC # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCATCACCCCAAGGTGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 5 117177-116966 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEK01000017.1 Streptomyces avicenniae strain NRRL B-24776 contig17.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 117176 28 100.0 33 ............................ CCGACGGCCACAGACGAATGCGCCAGCATCTGG 117115 28 100.0 33 ............................ CGGCTCGATGCTGCTCACGCGCATGACTTCGCC 117054 28 96.4 33 .............T.............. CAGCCCCGCCGCGCGGGCCGCGTCGATCCCGAC 116993 28 92.9 0 ...........C..............T. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 97.3 33 CTGCTCCCCGCACGCGCGGGGCTGTTCC # Left flank : GCTCCGAACGAGATCCTGGTCGGTGCGCAGGTCGCGGCTCTTCTCGATGACCGGCGCGCCGACCGGTCCGAACTCACCGCCAGACATCCTGATCACACCTTCCGCCCGGTCTCCGACATGGACCTCGGCGCCTGAGCCCCGGCATGCCTCGACTGGCACTTGACCGGGCCGAGGCGTATGGCTCGGCTTCATGTGTGATGCGGGGCAGAGGTGTTGGGTGTGGCTTGGTGTCTGGGGCCAGTAGGTAGGGGAGAACGGCGGCGGCGGTTGGTTCTACCCTGCCGTCCTGGAGATTCGGCGTCCGCCGCTGGGGGACGCGGGACACAGCTGAGATGCGGATGAGGAGGAGGGCAACGCCTATGGCCGCGTTTCAGCCGACGGCCGCCTGGGGTACGCAACGCACCACTTCTCCACACCCTGCCACCGGGGCGCTGGAGTCGGCGAAGGTAAAGCTAAGTAAAATCACCACCGGTCCCCGGTAAACCCGCAGGTCACTTACT # Right flank : CGGCGATGAGCCGTGGCCCGCAGTCGCCGAGGTGCCCGTCCCGCGCGCCCGGGGGCTCGTGGGGGATCAGGGGATGTGGTGGTCCTGCGGGGTCACGGGAATGTGGTGGTCCAGCGGGGACACGGGGAGGTGGTTGTCCGGGGGGACGTGGACTCCTGTGCCCACGGAGGACTCCGCCGCCGTGGCGGTGGGTGCGGTGACGACTGCGGCGGCGGCGAGCGCCAGCGGCAGTGCCGCGAGGGCGAGCTTGGCCCGGTTCGTGATCATGGATTTCCTCGGATGATCTAGAGGGCCTACATGGGGCTGTTGTTCAGCCTAAGGGCGGCCTGCTGCCGTCAACTGGACTGACACCGTTGACCGTTGTTGCCTGTTGGTAGAAACACCCCGTCCGTCCCGGCCGACGAGTCGCCGCCCGCGCGGCTACGCGTCCCGCCGCCGCAGCAGCAGGCCGCCGACCAGCAGCGCGGCCGTCGTCCACGCCGCGAGCACGCCCAGGCCCT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGCTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCACACGCGGGGCTGTTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 128489-127667 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEK01000005.1 Streptomyces avicenniae strain NRRL B-24776 contig5.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128488 29 100.0 32 ............................. GCGCTCGCCGAGATCCAACAGCAGATAGTGGA 128427 29 100.0 32 ............................. CTGTTGCCCCCGAACGCCTCACGGAGCGAGGG 128366 29 100.0 32 ............................. TGGCAGCGCATCGCCGAGGACGTGCTGGAGGC 128305 29 100.0 32 ............................. GGACTCGGCGAACTGGATCTGCGCCTCGGCGG 128244 29 100.0 32 ............................. CTGCGCCACCACGAGTCGATGACGCGGCCGGT 128183 29 100.0 32 ............................. ATCCCGGGGGCGCTGCGTAGCTGGGCGCAGCG 128122 29 100.0 32 ............................. CCATTGGCATATTCGTTGACGGGGGTCGTGAT 128061 29 100.0 32 ............................. GATGAGGTGCTGGATGGCGTGGGGCGGGCCTT 128000 29 100.0 32 ............................. ATGACGCCCGAGACGATCGGGCAGCTCGGCGG 127939 29 100.0 32 ............................. GGCGAGACGTGACGGTAGCTGAGTGGCTGGGC 127878 29 100.0 32 ............................. ACGACTGGCGGCGCGTCCTCCGCGTCGCCCCC 127817 29 96.6 32 ................T............ GTACGGCTGCTGCGGACGACGGCCCCGGGGCT 127756 29 96.6 32 .......................A..... GCCGGGATCAACAACGCACTGTCGAACCCGGT 127695 29 79.3 0 .....T................C.GGTG. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.0 32 GTCCTCTCCGCACGCGCGGAGGTGTTCCG # Left flank : GCTGCTGCCGCGCATCGTCGCCGACATCCAGCAACTGCTGGACCCGGCAGGTGATTACGAGATCGAGGACCCCGACGAGCAGCTCGTTGACCTCTGGGACCCAATCGCCGGCGCCATCCCCGGCGGGATCAACCACGGGGCCGAGACATGAGAGACGAGAGGCCGCACCCATGGCATCCATGATCATGATCTCGGCGACAGCGGTCCCCGACCACCTCCGAGGCGCCCTCAGCCGCTGGCTGCTGGAGGTCACCCCGCAGCTCTACGTCGGCACCGTCTCGGCCCGCGTCCGCGACGAACTGTGGACCTCGGTCTCCGCCGTCATCGGCGACGGCCTGGCCGTTCTTGCGTACCCGGACGCCAACGAGCAAGGCTTCTCCCTACGTACGGCAGGGACCCGTCGCAGACACCCACTCGACTTCGATGGGTTGACCCTGATCGGCTTCCGAAAGGAAGGTCAAGAAACAGCAAAGTCACTCTGACGTCGCAGGTCAGAAAGT # Right flank : GGGATTTGGGGGAACCCGGGCTCCGCAGGGGGCTGTCCCCAGCGCTGGAGCCACTCGCTGACGCGGCGGTTGGCGTCCTCGCCGGTGCCGAGGACGAAGCGGGCGTGGACGCGGAGCAGGAAGGCCGGACCGGTCAGAGCCCTGCGGCGTGACGCCGACGGTGGTGGGCGAGGGTGACGGCGGCGAGGAGGGGGCCCCAGGCGACCAGCGGCAGGTAGAGGATTCCGGCGATCGTGCTGCCGAGAGGGGTCATGTCCTGATGAGGGAAGGCCCACCAGAAGGCGAACTGGCCGAGGGCCAGCGTCAGCACCCCGGCGCCGAGGCCCGCCGCCACGGTCACCGCCCGCTGGTTCGGCCGACGCCCGCCGACGACGGGGACCCACCGCGGCAGCACCTCACCCCACGGCCGGATCAGCCCGAGCGTGAGCAGCGCGAGCAGTTCTCCACCCACCGTCAGCCCGACCACGTACACCGCGCCCCAGCCGGTGAAGCCCATCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCACGCGCGGAGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCCGCGCGGGGGTGTTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 138941-140983 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEK01000005.1 Streptomyces avicenniae strain NRRL B-24776 contig5.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 138941 29 100.0 32 ............................. TCAACGCGAGGAGCCTATCGGCTCCGTATATG 139002 29 100.0 32 ............................. ATCTTCCAGCGTGCCATCAGCTTGCCCCGTCC 139063 29 100.0 32 ............................. GACCAGGCGAGGCTGTGCTTCGACCCCGTCAG 139124 29 96.6 32 ............................A GGAGACTTCATGGGATTTTCGCGAAATGAACA 139185 29 100.0 32 ............................. CTTACGGACGCCGGATGGATCGTCGGCGAGTG 139246 29 100.0 32 ............................. CACGCGGGGCGTACGGACCGGCAGCGGCGGCC 139307 29 100.0 32 ............................. GCCGCCTGGGTCGCCTGGGCGGTTGCGTGCGG 139368 29 100.0 32 ............................. ATGTGGACGTGAGACAGGGCGACCACGGGGTC 139429 29 96.6 32 ..A.......................... ATCTTCCAGCGTGCCATCAGCTTCCCCTCTTC 139490 29 96.6 32 ............................C CAGTCCACCACCCACTTCTCCGGGGTGGCGAG 139551 29 100.0 32 ............................. TTCCAGTTCGAGCGGGAGCACGGCTCGCGCTC 139612 29 100.0 32 ............................. GGATTAACCGGAATGCGCTTTGCCGTGTGCGC 139673 29 100.0 32 ............................. CCGCTCGGGCAGGCGCACGGTCGGTTTGCCCG 139734 29 96.6 32 ............................T GCAGCTCGGCGCGAGCTTGGTCGCGCTCCGCC 139795 29 100.0 32 ............................. ACGTACCAGCTCGGCCGCGAACGCACCTGCCA 139856 29 100.0 32 ............................. GTGTTCGGAACGGTGGCCATAGAGCGAGAGTA 139917 29 100.0 32 ............................. AGGTGCGGCTGCTGGGCGGCGGTGGTGCTGGT 139978 29 100.0 32 ............................. CGCGGTGGCCGGGTGACGTGGCTGTACATCCA 140039 29 100.0 32 ............................. CGGTCCTGCTGACCACCGACGCGGCGGGTGAC 140100 29 100.0 32 ............................. GCGGCTCCCGCCCGGCCACTCCCGTGCGGTAT 140161 29 100.0 32 ............................. TGGCCCCGGACGGGAAGATCGAACCTGGCACC 140222 29 100.0 32 ............................. GTTCATGTGTCTCTCGTTTCTCTCAGCCGAGG 140283 29 100.0 32 ............................. ATGGTGGAGGATCTGCGCGCCGAATACCCGGG 140344 29 100.0 32 ............................. TTGATCAGGCCCGGGGACCCCGCCCGCGTCTC 140405 29 100.0 32 ............................. ACCACGCTGCGCTGGGCGCCGGAGCCCGGGAC 140466 29 96.6 32 .A........................... CGCCTGCCGCCGCAGAGCAGTCCCCCGAGCCC 140527 29 100.0 32 ............................. CAGAAGGACCGGCGCGACGAGCGCGGTGAAGA 140588 29 96.6 32 ..........................G.. GCGACTGGTACACGGAGGGCGCCGAGGCGTGC 140649 29 100.0 33 ............................. GTCCACCGCCCGCGCGCTGGCTGCGGCGGTGGC 140711 29 100.0 32 ............................. GAATCCGTATGCCCATGCCCGTCGGCGCCCAG 140772 29 96.6 32 .................A........... CAGGGCATCACGCAGTCGCTCCGCCAGCGGGG 140833 29 100.0 32 ............................. GACCGTGACAGGCGTGAGGCGACCGTCGCCGG 140894 29 100.0 32 ............................. GTCCACCGCCCGCGCCGGTAGGTCGTGTTGGG 140955 29 96.6 0 ......................C...... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.2 32 GTGCTCTCCGCGCGAGCGGAGGTGTTCCG # Left flank : GCACGTCGCCGCTCCGAGTCCCTCGTCAGTCACGTGTGTATCGAAGCAAGCGCCACTGACAGGCGACCCCTTCGAAGCGGGTTCCGGACGCGCACAGGCGACCGGCAGTGACCGACTTCCGGCCATACGCGGAAAGATCACCATGCGGGCGTTGCCGCCTGGATGATCATGCACACTCGCTGTAACCAGCCATGAAGCGCCCCGAACGCCATCGACGAGCACCGGGGGCGGTCTTCACCGCCGTCGCTTTCGAGACAAAAGCCAGGGAAAATCGCCTCCTGCCGCTACCGTCCGAAAAACGCCCCTATCGCAGGGTCGTTGTTCTGAAGCCCTGCCCGCGACGGGCTTCGCCGACGACGCCGACGTCCGGCTCTCGGAGCCGGGCACGGCGCAGCGGGCGGCGCCTAGACTTGCGGCATGGGAAGCAGGACCGGCCTGGGGCCCGCGGCCGCCAATGGCAAAGGAATGGCAAACCGCCTCTAACGCCGCAGGTCAAAAAG # Right flank : GTGGCAGGACTCCACGGGGTTCTCCGCCCGGCCGAAGCCATCCACCTCACCCAACGCCAGTGCCACCTCCCCACCCGAGGCTGGGGCCGACCCGACTCACCCTGCGCGGTGGCGTGGTCCGCGCCGGACGAAGCTGGACCGACGACGGAAAAGCCCACGAGGTACGCGGGCTGAAGGCCCGCGCACCTGAGGACACCCGCCCAGGGCCGATCCCGCCGCCCCTGGTTCGGATACTGCGTCGGCACATCAACATCTTCGGCACCGCGCCCGACGGACGGCTCCTCCGCACCGGGCGAGAAGGCGTCCTCCAGGAGAGGGGCTACGGCAAGGTCTGGGCACGCGCACGGAAAGCCGCCCTCACAGAAGACGAAGTGACCTCACGGCTCGCCCGCCGCCCCTACGACCTACGGCACGCCGGCATCTCCTTCTGGCTCAGCTCCGGCGTCGCCCCCGCCGAGTGCGCCCGTCGCGCCGGACACAGCCTCGCCCTCCTCTTCCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGGTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 167082-167781 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEK01000009.1 Streptomyces avicenniae strain NRRL B-24776 contig9.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 167082 29 100.0 32 ............................. GAAATACGTAACGAAATTCCCTGCGCGCAGTG 167143 29 100.0 32 ............................. GGCTCGACAGCATGTACGCCGCCGCCGTCGCC 167204 29 100.0 32 ............................. CTGTGCACGCGGTGCGCCGCCCAGCGCCACGA 167265 29 100.0 32 ............................. AGCCGCTGGATCGGCTGGTCCAGCGCCGAAGC 167326 29 100.0 32 ............................. GGGTCGGGGTGGCGCCCGCCCGGCTGGAGGCG 167387 29 100.0 32 ............................. TGCCAGACCCGGTTCACCGCGGCGTTCCACGG 167448 29 93.1 32 ..............T........A..... GGTGATCTCGGGGTTCGGGTCGCGGCGCGGCG 167509 29 96.6 32 ..............T.............. AGTCCGCCGGGAGCCGGGTGGGGCGTGTCGTC 167570 29 93.1 32 ..............T........A..... GGTTGGGTAGCGGACGCCGTCCCAGGTTCCGA 167631 29 96.6 32 .............A............... GTCGCTCAGGCAAGCTTCACGACCTACGTGCG 167692 29 100.0 32 ............................. AGTCCGCCGGGAGCCGGGTGGGGCGTGTCGTC 167753 29 86.2 0 .................A...C..CC... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.1 32 CTCCTCCCCGCACGCGCGGGGTTGTTCCC # Left flank : GGCCTCGTCCCGCCGCAGGACTGGCGGCCGGACGGCCCCGCCCCCGAGGAGGCGACACCGGAGACCGTCTCGATCTGGGCCGGCGTCGCCCGCGTCCCGCACGCGGCGTCGTAGCGTGCCCGGTATGACGACGCGCGACACCGGAGAGGACGATGACGGTTCGTATCTCCTCAACTACGCCTACGTCTTCGCCAGCCCGACCACCACAAGGGACGCTTCCACTGGGAGAGCCCATGAGCGCCGCGGCCCGGCCAGTCGCTCACGGACGTCGCGACGGGAGCGCAGAAACCCGACGAGGGCCCGGCTTCGGGCCCCGTGGGGACGGCCGCAGCATGGCCCAAGTACGGTCGGATCGAGGCGAGACAGTCAGTGGACATCGTGGCGGTCACGGAGTCATGGGCCGAACACGAGGCCGCCGCACACGCCCCGCGTCTGCGGCGGCTGAAGGTAAAGTAAGTAAAATCCCGTACCCCCGCCCGTGAACCCGCAGGTCAACTACT # Right flank : CGGGTCATCGGGGCGATAGAACCTGTGGTTGATATGCCGCGGGTGACCACGGGCGCCGACCTGGCCGCAGCTTGTGCCTACGGCAGAAGGACGGTTCAATCGCCGAATGGCTGGGACTGACATCGACCTGGGAGTCGTGACGGCGCCGTCGGGAGTCCTCGTGCTGGGGATGGCGTCGTGGATCGACTTCTGGCCGCAGGTGGGCCGACCGCTGTCCGAGCGCGCGAGTGCCGCCGCGGCGATCGGCGGCGGACACGTCCATGACGGGGACTGTGAGATGGTCGCGGTTCGCGCCGCCGACGACAGGCCGTTGACGGTGCGGGCCAGCACGGCGGCGTCGCCCTTCGACGCGGGACCGACCATCGCGGTCCTGGAGGTCGATCTCGGTCTGCCGTGGGTCGGCCCCCCGGGCGACGAACCGGTCGTCCTCGGTGACCTGCCGGTCGATCGTTGCGGCATGGTGCTCGGGGACGCGCTTGCCCTGGACTCCTGGACCGGGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCACGCGCGGGGTTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCCGCGCGGGGGTGTTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 632743-632892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEK01000009.1 Streptomyces avicenniae strain NRRL B-24776 contig9.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 632743 28 100.0 33 ............................ CCTCCCGCCCGCGAGCGCGCGTTCGACGCGGAC 632804 28 96.4 33 .....................T...... CGGACCGTGCTGGCGTACAACGGGGACTACGAC 632865 28 75.0 0 .............C...C....C.GGGG | ========== ====== ====== ====== ============================ ================================= ================== 3 28 90.5 34 CTCCTCCCCGCACGCGCGGGGCTGTTCC # Left flank : TTCAGGACGTCGTCGGCGTGCCCGACGGGCAGGAATTGCCTGGGGGTGAGCTGCCTCGTGGGCAGGTGCAACAACATGGCGTTCGGGCCGCCCGCCAGGTTGACGGCCGTGTTCTGGTAGCCGAGGACGTGCACGAGGCCGTGCTCCGGGTGGTTCAGGCGCCCGCAGTAGGCGATCGTGCCGGAGAACGCGGCCTCACCCGTCGATATGCACATGGCGGCACGGTACCGCCCCGTCCGGCGCGCGCCGCGGGAGTCCGGGGTGGGAGCTGCTCCGCAGGTTCGGCTTCTCCTGCCGATGCATGCGGGACATGGCTGAGGTGCGGGCGAGGAAGGCAACAAGTGCCATGCGCAGAAAGCGCGTTCCGGACAACCGCCGACAACGGACAGGGGCCACACACTGCACCACCACTCCACCTGCTCCCGCCCGGACAAGGGAGTCGGTGAAGGTAAAATAAGCAAAATCACGACCGGCCCCGAGAAACCCGCAGGTCACTTACT # Right flank : GCCGCCCGCGACGGGCGGTGCCGCGCTAGCGCGCCGCTCGTGCCGGGGTGGTCGTGCGGCCCGGTGAGTGGGCCATCGCCTCGTGCAGCCAGCGCCGCAGCACCCGGTGCACGGCCTCGGCGCCGACCAGTTCCCCCGCCGGTTCCTGGCCCACCGCCGGGACCGGCGCCGAGAGCGCCAGCGGCGACAGCAGGAACGCACGGCTCTGCTCGCCCCCGAGTCCCCCGTGGCAGCCGAGCTGCTGCTCGAAGGCGTGCACGTCGCCCGTGTCGGGATCGACCGACGAGTTGATCATCAGATCGGCCGTGTGCGGGAACGACGCCGCCCGCCGTACGGCCGCCGCCGCGCCGGGCCCGAACGGCGCCAGCGGGTCGGCGCCCCGCACCTCGCCCGAGTCGAGCCGGAACTCCGCGCCGTCCGCCCCCAGCACCACCGGGCCGTAGGCCGCGCTGCGCACCAGCACGAAGCCGATCCCCGGATGCCCGGTAAGCGTCGGCAGC # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCACGCGCGGGGCTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCACACGCGGGGCTGTTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 640925-641074 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOEK01000009.1 Streptomyces avicenniae strain NRRL B-24776 contig9.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 640925 28 100.0 33 ............................ CACCGGCATCGACGGCATGGGCTGCTGCTGCCA 640986 28 89.3 33 .............G...A...G...... CTCGGGCCGCCGCCGGATCGACCCGCCCTTGGT 641047 28 92.9 0 .....................T....G. | ========== ====== ====== ====== ============================ ================================= ================== 3 28 94.1 34 CTCCTCCCCGCACACGCGGGGATGTTCC # Left flank : CTGCACCGGCTGCTGTTCGACCACACGCCGCGCACGGCGGACCTGGTCGCGGAACTGCGCGCCTTCGAACACCACGCCGCCGCCGCGCTCGCGTCCCACCTGCGCCGCCTGGGCGCGGGCGGCAGCGACCCGGAGACGTCGGCGCTGCTGGCCGTCCAGGGCATCGAGGCACAGATCCACGGCGCGGTCCTCGACCCGGCCGACGACCGGACGACGGACGACCGCGTACGGGCGGTGGTCGATCTGTGGCACCGCGCCCTCACACCCCCGGCCACCCCGACGCGCGATGACGACGACGGCGGGACCGGTCCAACCGCGCGCTAGACAATGGGACATGGCTAAGGAGCGGACGAGGCGAGGAGGCAACGCCCGTGCGGCGACGGCAGCTTCAAGAATCACCGCACCACAACTGCAATGGCCGCCGGACGAACGCCGGAGTCGCCCGGGGTAAAGTGAAGCAAAATCACGCCCGGCCCGGATAAACCCGCAGGTCACTTAGT # Right flank : CGCGGCGTTGCCCGATGGGAGCGCCTTGCTCTGAGTTGCGCGCGACGAGGGACTGCGATGTGCCGGTCACGCGGACCAGCAGTCTCGGACGATTACGGGCGCCAACTAGCTGGCGGCGGAACCGGGAGGGGCGCCGCCTTCGGTGGGAGCGCGGCGCACGTCTCGCCCTCCCCGATGGCGGCTCGCGGCACAGCTACGGGGAGGCGATAAGCCACACCACCTCAACCATGACCGCCCGGTCCCGCACGCGGTACTGGATGGACACCTCGACCGGCTTCAGCTCCCATTGCCGCAGCGCCTCCGGTCCTGACCCGGTGTGGACCCGCCCCACCTCGGTCGGTCGCCGGGCGAGGACATCCAGCGCGTCGTGCACGGCCCGGCGCTGAGGTGGCAGCAACCCGCCCAGGGCCACCTGCGCCCCGGCGGCCAGGATCACCTTGTACCTCACCGGCCCGGTTCCTCCCCTTCGGCCTGTCCCGGCGCCGGGCGCAGCTCGAAGT # Questionable array : NO Score: 3.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCACACGCGGGGATGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCACACGCGGGGCTGTTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //