Array 1 10858-13205 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTUT01000004.1 Bacteroides sp. AM16-15 AM16-15.Scaf4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 10858 47 95.7 30 A.............................A................ CTATCTTTTCAAACTTAGATGTTGCAGGGT 10935 47 100.0 29 ............................................... GCCATTTTTTCGCTAAGATGTTCCTGAAA 11011 47 97.9 30 ................G.............................. TTCGGTACCGATTTCCAACCCATTATAGAA 11088 47 97.9 31 ................G.............................. GTAATCGTATGCGGAAAGTATCGCGCGTCAA 11166 47 97.9 29 ................G.............................. TTTGCTTACCGCATACATAATGTATGCAG 11242 47 97.9 29 ................G.............................. GCAAAATAACAGGCGTATCTTCCGCTGTA 11318 47 97.9 30 ................G.............................. TAGACCCCAAAGATATTGAGGAAGCTGCTA 11395 47 100.0 29 ............................................... GAAGAACTCAATATCGCCCGGAAAGAACT 11471 47 100.0 30 ............................................... AGAAAGAAGAAGAAGCCTACAAAGAACTGC 11548 47 100.0 29 ............................................... GTATAAGAGTCGTTTATTTAAACCCATAA 11624 47 100.0 30 ............................................... GCTGTGCCTGCTGACCTTCTTCGTCTTGTT 11701 47 100.0 30 ............................................... GCGTTGTCGGTATATAATCCGCCGCCCGGA 11778 47 100.0 30 ............................................... ATGGTCGTTGATAAAGAGAGTTACGAATTA 11855 47 100.0 30 ............................................... CCTTAACGTCCGGGTTCATTGCCAACGTGC 11932 47 100.0 30 ............................................... TATCTGATGGCAAGGCAGGTGGAGCTTCCC 12009 47 100.0 30 ............................................... ATTTGTCAATGACTGATATTATTGACTTGG 12086 47 100.0 29 ............................................... CTTTGAAAAGGAATACATGAACAATCCTA 12162 47 100.0 30 ............................................... CCGCATCCGTTAGAAGACATTGATAAAACT 12239 47 100.0 29 ............................................... GTCTATACAGGAAGAATTAGAGATTGCAA 12315 47 100.0 29 ............................................... AACTTCGGAAATTACGCTAACGAGCATCC 12391 47 100.0 30 ............................................... ATCTGTTTGGAATGGAGGATTAAAACCATG 12468 47 100.0 30 ............................................... TAAGATTTTAAACAATGATGGTGATATTGT 12545 47 100.0 29 ............................................... TTTTGAAAATGCTGATTGGGAAAACTTTA 12621 47 100.0 30 ............................................... CTAAATCAGAGAAGCGATTAGTATATGGTT 12698 47 100.0 30 ............................................... ATGGAAGCAGAAGTAAAACAAGTAATCAAA 12775 47 100.0 30 ............................................... GTCGCCCCGGCGGTTTGGGTTATGACCTTA 12852 47 100.0 30 ............................................... CCGAAGCAGCTAAAGAAGCTGAGAAGGCAG 12929 47 100.0 30 ............................................... TTCAGGGCATTCTACGTTCGATACTTTCGG 13006 47 100.0 30 ............................................... AATGCCTAGAATATACCAAATACAAAACAG 13083 47 100.0 29 ............................................... TTGCTGATACAGATACAGGAGAAGTATTC 13159 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 31 47 99.5 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGAAAACAAC # Left flank : CAGCAAGTACCCAAACCCTGCTCGGTAGCAGCCAGACAGAGGTGTTCCACCGCAATAGCTATATCAATATCTGCATGATCTTTGTTGTCGGCACGACGATGCCAAGACTCTTCATGGTTTGTGCAAGCCACAATGATACAGGGAGCTGTGGCAAGCCACTCACGCTTATAGCATTGCTGCAACGCCTTTAATGTAGGTTCATCTGTGACTATTTTAAACCGCCACGGTTGGAAATTAACTGCCGAGGGAGCCAAGCGTACACACTCCATGATATACTCCAATTTTTCTATCTCAACCGAACGACCGGCATATTTGCGGGCAGAATAGCGCGCTTTTACTAATTCTAGAAAGTTCATAAGCATTATTATTAGTTTGCAGACAAAAATACTAACTTTGCTAATATATCCCAAGCTTTTTGCAATGAGTATCATTTATCAATTGCTTACGAACTATTTATATTCTCATTTTGTAATTTTCAATCCTATTATTATCAAATTACT # Right flank : CTGAATATATGTTACAAGCTAATTACCAATTAGTTACACATATATTCAGAAATTAAAAACAAAGTTGTTTTCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTTGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCAGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 7930-8892 **** Predicted by CRISPRDetect 2.4 *** >NZ_QTUT01000019.1 Bacteroides sp. AM16-15 AM16-15.Scaf19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 7930 32 100.0 35 ................................ TAGGATATGCATCACCGGCAAGATTGCGAAATTTT 7997 32 100.0 35 ................................ ATTGTACCTTGTACTCATGTGCTGACGATTGATGT 8064 32 100.0 35 ................................ TACAACATCCCCATTTTTGTCCAATATAGCTCCAC 8131 32 100.0 33 ................................ AACAGGATATCCGTTTTTTCAACATGATTTGTA 8196 32 100.0 34 ................................ TATCGTAACGATTGTATATCTCATTGTCCAATTA 8262 32 100.0 34 ................................ TTCTTTTTCGAGCAAACCGAGCATATACCCTCCA 8328 32 100.0 36 ................................ CCGGAAGAGCGCAAACAGTATGATGATTTTTATGCT 8396 32 100.0 35 ................................ AAGACAGAGAGGTTGAAATATTCGGGACATTCAGC 8463 32 100.0 33 ................................ ATGCGGGCGATGCTGAGCAACAAGATCGGTGAG 8528 32 100.0 34 ................................ TTCGGGAATAAAGCGGCTGAACTAGTAATTGAGA 8594 32 100.0 34 ................................ ACTCCACTACTCAGATTCTCTACCAATCCGTAAT ATC [8604] 8663 32 100.0 34 ................................ GTTTCAGACGTCCCAAGAACGGAAGCAACGTCAC 8729 32 100.0 34 ................................ CTGTTTCCAGTCGTGTCGAACTTGAAAAAATGGT 8795 32 100.0 34 ................................ CTGAGCGACCCTCTGCCTGCGACAGTACATCGTG 8861 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 100.0 34 GTCACACCTCATGTAGGTGTGTGGATTGAAAC # Left flank : TGATAATTATCCGGTATTTCTAATAAAATGATTTACGAGTATGTATATTCTTGTAACTTATGATGTGGATACTACGAGCAAGGAAGGAGCTCGCCGTTTACGGTGTGTGGCTAAGGCTTGCATAGATTATGGACAGAGGGTACAGAATTCTGTCTTTGAATGTGAGGTGACAGAAGCACAATATTGTCTCTTGAGAGGAAGAATCAAAGATATCATTGATATGTCTCGTGATAGTGTTAGATTCTATATTCTTAGTAAAAATGAGAATAGAAGGGTGGAAGTGATAGGTGTCGAAACTGCTTATAAAGTTAATAATGCTTTTATTGTATAATGTGTGCGAATGTGGAGTGTTGCAAAAAAAGTAGTATCTTCGCAACTCTTAATAATCAGCAGATTGGCTTGTTTATAAGGCGAATGCCGTTATTCAATTGAAATAAAAATGAGAATTCGCATATTAGTAGGGTTAATTTATTGATTTATAATATACAACTCTGTATACA # Right flank : CTAATGTGCAAGCTACGCCAGTAGGACCATTGAACTTACGCTACAGACGCTACTTTCAATCTTCCTCTTTTAAAAAAGAAACAAACTCGGGGGTGAGTTTCGTTCCTTCGGCAGCAAGGTCATCGTATGTATAGGAAAAGGGTTCACCGGTGGCTTTATCATACCAGCGACGATGCCGGACATGAAGATAGACAGGTTTACCACGCAGAGGAAACTCCTGAATTACTTTTTCATCTATAAAACCACTGGAAATGACAGTACCGCTCTTGTAATCAAAACGTTCCATATAATTCTTCTCATCAAGCCAAACTTCGATTTTTGAAGAATCGTCATGCCAACCGGATATATCGAAATATTCCATTAAAACTTCAGAGAAGATTACACGAAGTAACTTATGCAGACTACGATTGGGATTCATTGGATTGGTTTGTTTAATTTAAATGCAAAAATAATGTTATTTGGATAATCTACACGGATCACCCACAGGATTCTCGGATTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCTCATGTAGGTGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //