Array 1 626776-626364 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXE01000001.1 Corynebacterium amycolatum strain NCTC7243, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 626775 36 100.0 34 .................................... CGATCTGAAATAGCTTCCGCACCAGCCTTAGCCA 626705 36 100.0 39 .................................... GCCACTTCGTGGAGTCGATCATGCCGCTTTCGATCACCA 626630 36 100.0 44 .................................... AGCGTGGCAACCGGCGGAATGTTCATAGTGAGTAGGTCGTCATG 626550 36 100.0 41 .................................... GGCAATTAGGGCACTCAGTGATCTTCACAGGGGAGGCAAGG 626473 36 100.0 38 .................................... GCCGACCTCTTCGCCGTATTCCAGAATCTCTCGTGCGG 626399 36 88.9 0 .....................C.........T.T.T | ========== ====== ====== ====== ==================================== ============================================ ================== 6 36 98.1 39 TTTCGCTTTATGTCTCGCTATTAAGCGAATTGAAAC # Left flank : TCATGGCGATGATGGTGCTTGTTGCTTACGACGTCGTCGCGAATAGTCGCCGTGCTCGTGTTGCCGCACGACTTCAGGAGTGGGGTAGCCGCCTGCAGAAGTCAGTGTTCCTGCTGGAGCTGGATAAAGAGGATTTAGAAGCGCTGAAGGTCAGGATTGCATCGCTTATCGACGATGGAGAAGACAGCATTTTCTATCTTCCGATTTGCACTAGATGCTTAGCGGGGATTGAAGAAGTAGGTCAGGCTGAAATACCTGAGAAAGATGTCGGTTGGTTCATTGCTTGAAGCTTAGAGCATCTGGCAGTTGACGCAGCGAACTCGGCTGGCTTGAAAACCTGTATTCAATAAGCAAAGGAAGTGGCACTAGTGTGCAAGGCTTCTACCAGCGGAAATATCTATTTCGGTAAAGCTTCGGGAGGTTGAAGTTCGAGCTAATGACGCTTGACGTGCAAAGTGGGTATGTTTAACCTGGTCAGTGGAGTGAAATTCCGGCAAAGA # Right flank : GCGAATTCAGCATCGTTAAATCGCACTTTTCGGAGATTTCCCGCATCGGAAGTATTCTGCTTATTCAACGCTGTTTGTGTTATATCGCAATCTGCTATTGCTTTCCTGAGCTCTACGATTTTCCAAGTCAAAAATTCAATTAGCTGATTGCGTCCAGTACTACGCAGCATCAACGCAAGTTTTCCCGTTCGGCAGCACCGTCGTAAAGCGGGCACAATGGAGCTGATAGATACGGCAACCCAGCATTGTGCAAAGTCGGTTTGACTATTGCGCTTGTACCTATTGACTGCCGAACCTCAAACGCCTCGCTCACCGCAACCTGTTTCACCGAAACCCAGTTCACATAAAAAGGAAGAAAGGCCAGACCATGAAGGTCGTCATCACCGGCGCCGCCGGTTTTATCGGCAACGCTGTTTGGAAGGAATTGGAAAGCCGCGGTGATGAGGTCATAGGCCTCGATCTGAAAACAGACGAGGCGCGCGGCATCTACGAGGCGGATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCGCTTTATGTCTCGCTATTAAGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 1481672-1483435 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFXE01000001.1 Corynebacterium amycolatum strain NCTC7243, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 1481672 36 100.0 28 .................................... AGTGTGGAGCGGTATTCACGTTCGGTGA 1481736 36 100.0 28 .................................... GCATTGGCACGCCAGATTAGGGCGGCCG 1481800 36 100.0 28 .................................... GAGGTTCGAACACCTTTGGTTCAGTTCG 1481864 36 100.0 28 .................................... TAGATCAGGTTGTTGATGGCGGTCAGTG 1481928 36 100.0 28 .................................... CAGACAGTTCCACGCCCTGCGCAATGTA 1481992 36 100.0 28 .................................... CAGTACGTCGACGACCAGACAATCAATG 1482056 36 100.0 28 .................................... AGTCCGTTAACGTAAACCGACCAGCCGT 1482120 36 100.0 28 .................................... CTGCAACCGCATTCGAAGTCAAGCCCAA 1482184 36 100.0 28 .................................... AAGACCACCACCGGCGGGCACGACACCA 1482248 36 100.0 28 .................................... GGGCGGTCTGGGGCAAATGGGTGGGGCT 1482312 36 100.0 28 .................................... CCCGGATTTGTTGGAGCTGTACACCCGC 1482376 36 100.0 28 .................................... CCCTGGCGCTGGTGGCGGTCATCGGGTG 1482440 36 100.0 28 .................................... TGTCTCTGAGGCGACCGCAACCCCGGCG 1482504 36 100.0 28 .................................... TAGTGGCGATTGACCAGCGTAAGGCTGA 1482568 36 100.0 28 .................................... CCATTGGGGACAACACCGAAACCGACAG 1482632 36 100.0 28 .................................... CCATTGGGGACAACACCGAAACCGACAG 1482696 36 100.0 28 .................................... AGTAGTTGGCGGGGGGGCTTGACGGCTG 1482760 36 100.0 28 .................................... TGGTTCTGGATCCCTTTTGTACCTCACG 1482824 36 100.0 28 .................................... CGCTCCCTGAATTGGTGTCGGGTCGAGC 1482888 36 100.0 28 .................................... GCAGGCAAACTCCCCTCAATCAAGATCG 1482952 36 100.0 28 .................................... GCATAAAATCACCGTCAACGTCATTGGC 1483016 36 100.0 28 .................................... AAATCGACAGTCTCATTGCCGAGCACAA 1483080 36 100.0 28 .................................... AGGTCATTGAAGAGCCCGTTTTTGGTGT 1483144 36 100.0 28 .................................... CTTATCGAGAAGGGCGCGACGACTCTGC 1483208 36 100.0 28 .................................... CTGCACCTGTATTCCATCGGCGAAGCGC 1483272 36 100.0 28 .................................... AGCTTCCCGCATTGATGTTCCTCAATAG 1483336 36 100.0 28 .................................... TAGAAGTTCCGCACAGTGATCCCTGTGC 1483400 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 28 36 100.0 28 GAAGTCTATCAGGGGAAATGAGAACCAATCCCCAGC # Left flank : CACAAAGATGGCCGAAACGTAACCACAATGCTAAGCGCAACAGCCCAACAGTTCGGACGGTACGCAGAGGGAGAAATCAAGCAGTTCCGTGCGGAGTCATGGTCTGGCCCCTTCCAGGAATCATCATGACGCGCGAGGACAAACGCATGTGGTGCATCGTCATGTTTGATCTTCCAGTTAAGACGGAAATTGAACGAAAAGAAGCTACAAAGTTTCGGAATTTCCTCCTAGACAACGGTTTTAGTCGAGTTCAATACAGCGTATACGTGCAGTACCTTCCGTTAGGCGCACAACTAGCCAAAATTGCCAGGGAGATCAAACAAAGATTACCCAACGCAGGCGAAGTTCGAATCGTTCCGTTGACAGACAAACAATGGTCAAATGCGTTCCGTTTTTGTAAGGGAACGCCCCAAAAGATGGAGGAAACACCACAACAGCTTGAAATTTTTTAGAAAAAATCCCCTGATAGACCTGTTCAAAAGGTATTTTTCTGCCTCTCA # Right flank : CGCAGCGTGAGTGAGGATGCCCTTCCAACCAAGACTGTATCACCAATAAAACTAATCGGGCTCCACTAACCTCTCCACAACTTCCGCTAGTCCTATCGGCAATCAAAACAACAAGTGACACGAATAGTGGAACACTTCTGTTAACGCGATGAAATGAGGCATTCCCAGCCACCTGAGTAAAAACAGTCAACCTGTGAAGTAAACCAATTCCTCTGACTGAAATACATAGTTCGCATGAGGCGCCTAGGGCTCTCTCATGATGACAGACACTCGCAGGCGCTGCATAGGTTTTGATTGGGCGTTTTGCGGGCAGGGCCTAGTTTTGTTCTTTCGCCAATTCCTGTTTCGCAGTGGCAGCTCGCTGTGCCCTGATCTCCGCTACCTGCTGCTTGCGGGTATTGAACCCCATGCGCCACGGGGCGGCTAGGCCTGACTCGGGGGCATGCGGGTTATCGCGCCAAGATTTTCCCTCGTTATAGGCCTGCGCGCCCTCACGGTAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTATCAGGGGAAATGAGAACCAATCCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //