Array 1 123529-125543 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRMQ02000001.1 Helicobacter japonicus strain MIT 01-6451 NODE_1_length_338440_cov_80.5382, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 123529 36 100.0 30 .................................... CGGTCATTACAACAATACTCTCTAATGTCC 123595 36 100.0 30 .................................... CAACAAGAAGCTTTAGAAGGTGCTCGTTTG 123661 36 100.0 30 .................................... TTTCATAAGATTAAAGAGACTTGCGCGACT 123727 36 100.0 30 .................................... CCCCTCAGTCAAGCAGTGGTTTTGGACTTG 123793 36 100.0 30 .................................... CTTTTGTGAATAACAACCCTACTGCGTTTT 123859 36 100.0 30 .................................... TCATCCGCAAACCTAATCTTAATCAAATTT 123925 36 100.0 30 .................................... CTCGCAAGTCTCTTTAATCTTAATCTTATG 123991 36 100.0 30 .................................... TTGTATTCTGAGGATAATCGTATTCTTTGC 124057 36 100.0 30 .................................... AAGTATGCGCTCCGGGCAATACCAATATTG 124123 36 100.0 30 .................................... TTGGATGAGAATGATGCTACTGGTAAAAAT 124189 36 100.0 30 .................................... TTCATAAGCATCAATGATACCTTTATTTAA 124255 36 100.0 30 .................................... CTTGGTAGCTGGTTTGGCTCAAAAGAGCAA 124321 36 100.0 30 .................................... CTCCCCAATCTAGTAGTGGTTTTGGACTTG 124387 36 100.0 30 .................................... GCGCCCGGAGTTTCATTAGAGCTCAACCTA 124453 36 100.0 30 .................................... ATTGCGTTGCAAATGCTACACATAATAATG 124519 36 100.0 30 .................................... AGCTGCGTGAGCCGCCTTTTCATCGATGCT 124585 36 100.0 30 .................................... TAAAAATAAGATGACACAAGATGAAATGAA 124651 36 100.0 31 .................................... TTCAACATTAGGAACTTCCAGGCGAGGCTTA 124718 36 100.0 30 .................................... AATGAAGCGCTTGAGGAGATTATGCTTAAA 124784 36 100.0 30 .................................... AATCTTTCTCAAGCCACGCATATGCAACGT 124850 36 100.0 30 .................................... CAAGCTAGTGGCGATGAGGCTCAATATTAT 124916 36 100.0 30 .................................... TTGCGCCGCTATATGCGCGGAATTGACATA 124982 36 100.0 30 .................................... TGGAATATGGTTCAAAAGTTTAGCTCTCCG 125048 36 100.0 30 .................................... ACCTCTAACAATGATAATATTCTTTTTGGT 125114 36 100.0 30 .................................... CAGCTGGTTACTCTAATACCGCGCTCTCTC 125180 36 100.0 30 .................................... CGACACATTCTACATTAGTGCTAGGAGTTT 125246 36 100.0 30 .................................... CTGGGTATGTCGGCAAGAAGCTCCCTCCTA 125312 36 100.0 30 .................................... TATTCACTAGGTCTAAGTTTCAATTCTTGC 125378 36 100.0 30 .................................... GAATTGTTTTTCTCCCTTTTTTGCACGTGT 125444 36 100.0 30 .................................... AAGGAATTGACAGAGCTTGGTCGCGTGAAA 125510 34 88.9 0 ...........................--.....TT | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.6 30 ATTTTACCATAAAAGAATTTAACAAGCGGCTAAAAC # Left flank : TCGTAAGAATCTTATCAAAGATGGCTTTATGATGTTGCAATATAGCGTGTATATGAGAATCTGCAAAGGTGTAGCAAGTGCCAATAATTATTTGGATAAGGTGGGTTTGATTGTGCCTCCCAAAGGGCATATTCGGGCATTAATCCTTACTGAAAAACAATTTGATAATATGCGATTATTGCTAGGCAGTAGAAGTGAGAATGAAAAAGCTAATGCGCCAAGACAACTTACGCTTTTTTAGAGTATCGCCAAGCTATAAGAACAAAGATTCTAAAGATTCAATCGTTAAAATGTTTGAAAATGTTTGTTAGAAAAGGTTTAAGTAGATTCGGTTTTGAGGGATTGTAACCCTGCGGAGACCGAAAACTCCTTATTTTAGCCGCTTGTTAAATTCCTTAAATGGGATTATATCTTAGATTTTCTTAAAAATCACTCATTTAGGATATTTTACGCCCTTAAAGCCTTTCAAATACCGCAAAATACGATAATTTGGAAAGTGG # Right flank : TGCTATTGATGCTTGAGCTTACCTCTTCTCATACCCTGCTCTATTCCGTGAGCCAAACGCATTGTTATAGGGTGCGTCCTGCCAATTACAAAAATCAAGTGAATGATTCATTCTACAATCCGCATAGGGCTCTTTAGTAGGGCTTAACCCACAAGCACAAAACAAAAGAGAAACAAAAAAGATAAATATCCTCATTGCTTATCTCCCAAAATTAAAGATTATGCTATCAATCTTACATCACAAATCATAAAAATAACTTAAAGAAAAAACTATGCTTAAACTCTTAATTCTCAAATAATTATTTATATTTTAGTAATTATTCCTATAATAAATTTTATTTTAAGTTTTATTTATCTATAATCCCATTTCACACATAATTCACACTTAAAAAGGAAACAAAATGAGAACAATAAGTAGAATACTAATGGGGGGGGGGATTACTTGCTGTTTATCTCTTCTCGGATATGCTGATGAAACACAAAAAAATGAGGATATTCAAA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATAAAAGAATTTAACAAGCGGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //