Array 1 239954-241792 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001483.1 Parageobacillus thermoglucosidasius TNO-09.020 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 239954 30 100.0 34 .............................. TTGTTCTAAGTCCTGCTGATAATCCGCAGGTGCT 240018 30 100.0 35 .............................. CCGATTTTGTTGTTCCCCGGCGGTAATTCCGACAT 240083 30 100.0 34 .............................. TCTCCTGCAAAAAAGGTTTGTATATCGGAATACG 240147 30 100.0 38 .............................. TTGAAAACGAGATCAAAGGCTATATGGGCGACAAGAAA 240215 30 100.0 38 .............................. TTGTTCAAGAAATTTTCTCTCTTGTGATGAAGAAGGTG 240283 30 100.0 39 .............................. AAGCAGAGAACATGCCTAATACAAATAAGAATTGTTTTT 240352 30 100.0 36 .............................. GTCGCATAGACGCCGACGAGCAGCGCGTAAACGGAT 240418 30 100.0 37 .............................. GACTATTTGCAGCCGCTAGAGGGGGCGGGCAAATGAC 240485 30 100.0 35 .............................. TCGGAGGCGCGGCAAAAGTACCGGAAAGAGTACAT 240550 30 100.0 38 .............................. ACATTTTTAAATGAGGTTTGAGGGACAACGCATTTTGT 240618 30 100.0 38 .............................. TTGTGATAAAAGAACGAGCCGATTCGATATCATTCACA 240686 30 100.0 35 .............................. GCGTTTTGGAAGAACCGTTTTTGTAAACTACCTGA 240751 30 100.0 38 .............................. GTGGATGACAAACATCCAAGCGGCGCCATCACTTATAC 240819 30 100.0 38 .............................. TTCGTTTCCGCAGTTCGTTTCAACTCTAACAAGCGTTG 240887 30 100.0 39 .............................. CATCGCGTTCTACTTCATACAGTATGAAATGATATTCGT 240956 30 100.0 37 .............................. TTCGCTAATTGGTTAGCAAGTTGTCGTTGTTCGGCTG 241023 30 100.0 37 .............................. TACGATTTTAGAACTTCCTGCTATTTTCCGAAAAAAC 241090 30 100.0 36 .............................. TCCGAACACCTTCGGCCACGTCGTCTGTGTATTCTT 241156 30 100.0 36 .............................. TAACTTTCATGCGCTATCATCACAGCCGCGTTCATT 241222 30 100.0 37 .............................. TCGAGAAACGGACGTACGAACGGATAAGTCTTTTCGT 241289 30 100.0 35 .............................. TCCGTTAGTCCTTTGTAAAGATTCCGCATCTTCAT 241354 30 100.0 37 .............................. CAAAAAGGTGCGAATCAAAGAACTGGCCAGACAAATC 241421 30 100.0 39 .............................. CCTTTATACTGGCTCAATTCTTCCTTAAATGCGTTTGGT 241490 30 100.0 38 .............................. TTTCTCACACGAGAAACAACAGATAGCCGATAAGCAGA 241558 30 100.0 37 .............................. TGCGCTAAAAACATGTCAATAGCTTCCTGTAAAACAT 241625 30 100.0 39 .............................. AAATCTTTCATAGGCGGCACGTTAATAACATCATTTTGA 241694 30 100.0 39 .............................. GCGTGCTGATAACATGCGCTGCAATCCCGCGCCATGCGT 241763 30 93.3 0 ....................A.G....... | ========== ====== ====== ====== ============================== ======================================= ================== 28 30 99.8 37 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TTGTAGCGATTTGGCAGTTTACGAATATATGGAATGAATTTTTATTTGCCGTCACGATCACGACATCTTCCCAGCAGCCGATTATGGTCGCGCTGCAAAACTTATCGGGCAGCCAAATTGTGCAATGGAACGTGCAAATGGCAGGAGCGCTGCTAGCGGCGCTGCCGACCTTGCTTGTATACATTTTTCTTGGCAAATACTTCGTTCGCGGTTTATTGGCCGGTTCGGTAAAAGGATAATCACGCATGCCAGCAAAAGCATAAGAAAAATGTTTGTCGGAAAAAATCCTTCCTCTTCTTTTAAGAGCTGACGGGGCTATGCAGGCGATCCGTTTGTCGTCGACCTCCAATCGTGCAAAAATCCCGGAGGATCGACGACAATTTCTTTTTTCCCTTTATCCTTACGGCCATCATCAATCCGCTCTATTGACGGAATTTTCAAAATGGCTTATACTGAATTTAGCCTTCTTGGAACATATTGATTTATCAATATTTTTTGGG # Right flank : CAAATTTTGTCTATCCGCTTTTTGCTGCCGCTTTTTAAAACGGATCAGTAAACAAACAAACCGCTGATTTTCAGCGGTTTGTTTGTTGATAAAGGTGTTTTAGCTAAGATTTTGCTGCTTTTATTGAGGTTGATCCTAATATTTTTTCTTCCATAGGTAAATGCGAAACAAATGTTAACAGGGGATAAGAGAGTTCCCCATGATTCAACACGATCCGGAAAATTCCGCTAAGAGGCTGCGGTTTGCATTTTTTATTCTCCGGTAATCTTAACATCGCCGGCGTCTCTCTGCTCTTTGCTTTGGAAGGCTTGACGAAATCTTCAGCAAAATGATTGCAGGGCATTCCTCGCCTTTGTTTTTTTGCTGTTTGAAGGCTTGTGCGGTATAGTTTTCTTTACACAATAAATGATTTGCTGCGATTGCTGCGATAAGCACTGCCCGGATGATCTTCTGGCAATAAGCTGCTGCCGTAATTAAATAACTTTTCTCGTAACGTTCCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 586212-584716 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001483.1 Parageobacillus thermoglucosidasius TNO-09.020 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 586211 30 100.0 36 .............................. AAAATCAAATTGCAGAAGCTGTGTTAAATCTAAACA 586145 30 100.0 37 .............................. ATTGAATCGAGGGAAGCCATTGAGACTTCCCCGTCAA 586078 30 100.0 35 .............................. TCCCCTTCACGGCGTATAGTTTGCGCAACATCCCG 586013 30 100.0 36 .............................. CGTAAGTATATCGCAGAGTATCGGCGCCTAACAGCA 585947 30 100.0 36 .............................. TTTACCCGCACGCTAACGTAATCCTCGGAAACGCCC 585881 30 100.0 38 .............................. GCGCACACGCAACGCACGGGGTGATCGGGAATGAAGTT 585813 30 100.0 37 .............................. TTCGTTCCAAGTCTTTTTTCCGTAAACGAACCGTGAC 585746 30 100.0 36 .............................. CGGACTATGTGAAGAAGGTAGTTTTTCAAGGACATC 585680 30 100.0 38 .............................. GAAAAATGGTTGGCCGCTTTCAAAGAATAAAAAAACAG 585612 30 100.0 36 .............................. TTGCCCCGTTTGCGGCTGGGAAGAATGGGGACTCAA 585546 30 100.0 35 .............................. TTTTGTTTTCTCCTTCACCTACCCACTTCACACGC 585481 30 100.0 36 .............................. TTTAAGTCTGCAAATTCAGATAAACCAACAGGCTCT 585415 30 100.0 36 .............................. ATGGTTAATTTTAATTTCATATTTATACCTCCAAAT 585349 30 100.0 37 .............................. TTTGAGTAAGTCACTCATTGTAATTACGCCAACATTT 585282 30 100.0 39 .............................. CCTATTGACGGAACATATACAGTTACTACTTTGAAAGGG 585213 30 100.0 37 .............................. CGTCAATAAAAAAGGAGTAAACGGACCGGCATCCGTC 585146 30 100.0 35 .............................. CTGAATTCTTGAGCGACGACATCTTCAAGCACTGT 585081 30 100.0 36 .............................. AAAACAGAAGGTACCACTACATTACTTGCACCATTT 585015 30 100.0 36 .............................. TCGGTGTGTCAGATGTGGGGCGTATAGGGGGATTGA 584949 30 100.0 37 .............................. TCATTGAATCCGCTATACAACATGAATTCCGGTTTTT 584882 30 96.7 36 .......................C...... TAAACTCAGTAATGTCTGGCTGCCAATCTGCAAGCA 584816 29 90.0 41 .....C................-..A.... CTAAGAGATCGTTCTCTTCTCTTATCTCTTAGGTTTTTATC 584746 30 76.7 0 ......GC...CG....G.AA......... | T [584731] ========== ====== ====== ====== ============================== ========================================= ================== 23 30 98.4 37 GTTTGTATCTTACCTATAAGGAATTGAAAC # Left flank : AGTAAAAACGGCCTGCCGAGCTTGACAGTGGTTCCGTGGGAATCAAGCTGCCCGTCAATTGCTTCGAATGGAACGCGCAAAAATTGATATCCCGCTTCATCGGCAATTTTATAATCAAATGAACCATGATCATAATCCCAATTTCCGCCAATGGTATAACCAAGCGGCTTTAACAATTGCTCCAATTGAAATAAAGGAAACGTTTTCCCTTCCAACTGTGATGGAATTTCGATCATCGCAAACAACCTCCTTTTTCACCTATGTTTCCCTATTCGCGCTCTTTATATGATTGTTATGGAATATTGCCTGCTACAAAATGCCCCCACACTGTCAATGTCGTCGACCTGGAATAGCGCAGAAAACCCAAGGGATCGACGACATTTCCTTTTGCTGCTTTTCCCAACTTCCATCAGCACCGCCGCATATTGACGAAATTTTCAAAACCAACTATACTAAACATAGCTGCTTTCGAAAAAGCTGATATACCAACGCTTTTTGGG # Right flank : ACTTACTCCGGCTGCCTTCCGATACGCAATTCAGTTTGTATCTTATTATGAGGAGCAAAACAGGTGTGCAGCTGCATTGTTGCTACCTTTGCTGCCACGGTTTATATTGCAAAACTTAAAACCTCGGTGAATCTTGTTTTTTATTGAGCAAGCCATTCTTATTGCATATTACCGTGGGTGTCAGCGAAAATTTGCTACGATAAGCGCGAAACACAGATGCCTGAGACAAAAACACAGCAAAATTACTTTTTTACAAATAAGATAAAAATCCCTTCCCGCAGCGGAAGGGATTTTTTGATAAGCAACCGGTGGCAAGTAATGTCTTCGCATGCAAAAAACGGAGTGCATGATGCACTCCGAAAATCCGTTCTGTTATTTCAAGCGTTTTTCCAGTTCCGCTTTTTTCTCTTCGTATCCTGGTTTGCCAAGGAGGGCAAACATATTGACTTTATACGCTTCTACGCCTGGTTGGTCAAATGGATTTACCCCTAATAAGTAAC # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1872960-1871718 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001483.1 Parageobacillus thermoglucosidasius TNO-09.020 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1872959 30 100.0 38 .............................. GAGAAAGTCACGCCGGATGAAAGCAACCGGAGCTTGTA 1872891 30 100.0 37 .............................. CATCAATCAAAAGACTGTCATGATGGACTGTAGTCCC 1872824 30 100.0 38 .............................. ACATTCGCACGCTTGACTTAACGAAAAAGACAGCAACA 1872756 30 100.0 39 .............................. TCGGCAACCCACCCTTCGGTGAAAGCGTAAGCACCGAGC 1872687 30 100.0 36 .............................. ATTCATAGAAGAATAAATATTCCGACAAGGGAGGTT 1872621 30 100.0 38 .............................. ATCGCTTTCCCACAAAAAGCACATGCGCCTTTTTGTCC 1872553 30 100.0 38 .............................. TGAATAAAATTCGTTGTCGTGAATTTTTCGTCACACGT 1872485 30 100.0 35 .............................. ATGTGTCGAGCGATTTCTTGATCATTTGTGATAAA 1872420 30 100.0 39 .............................. AACCCTGATAACTGGCTGGTCGTGAAGAGTTTGCCGGAC 1872351 30 100.0 36 .............................. ACTTTTGAATACGAATATCCTTGCACCCTTCGTTTG 1872285 30 100.0 37 .............................. TAAAAATCAAAAACCAATCCTTTTCAGCAGCAATGAG 1872218 30 100.0 38 .............................. TGTTGCCATGATAAACGAATCACAGAAGCACGGTCTTT 1872150 30 100.0 39 .............................. AGCAAAGAAACGGTCGATATCTTCTTGTGTGGCCATTCG 1872081 30 100.0 35 .............................. CTAGTCCGAGATATCCATAATGTAATGACAATCGC 1872016 30 100.0 39 .............................. CAGTACAAAGTATACACGGACATTGAACAGGTGACAGCG 1871947 30 100.0 36 .............................. ATTTCCGCTCTAATTCGTTTCTTACCTCTCCGGTGC 1871881 30 96.7 38 ..................G........... GAAGTAATCTTGAAAACAGCAGCACAGGCTGCCTGGGA 1871813 29 90.0 36 ....................A....-...G TATTTCCGGCGTGGAGATGGGATGATATGGGATTCG 1871748 30 90.0 0 ....................A....A..G. | A [1871736] ========== ====== ====== ====== ============================== ======================================= ================== 19 30 98.8 37 GTTTTTATCTTACCTATAAGGAATTGAAAC # Left flank : TATGTCTTTATAAAAATATGTTAAAAAATCGTTAAAAGGTTACATAATGATGTGATGTAAAAATCATGAGTATTGTAAACACTTCACATATGAATGGTGACAGCAGGAACGGTAAAACAATAAAACAGATAGCAATAAATGAGCCAGAATAATGACTAACGATAACATGCCTAGAAACAGCTTATTGCCAGCACTCAGCCGCTTTTTATGAGGATATAGAGGGAACACAGGAGGTGTCTGCAGCCGGTCTTTTCTTTTCTAATGAATACTCAGTGGTTAAAAATTTTGAATCAACAATAGATGTTTGAATTCATTATAGCAACATATATTTTTGTCGTCGATCCTTAATAGCGCACAAACTCCAGGGGATCGACGACATGTTTATTTTCCTATTTTCTCCTACAGACATCAGCATTTTTTTATATTGACGCAATTTTCAAAACGGCGTATACTATACATATCCATTATCCACCATCCTTGATATATTAGCATTTATTGGG # Right flank : ACTGACAATCTATATCCAAAAGAGCTAACACTGATAATGATCCCCCTTTAAGTGGACAGTGTAAAAAGCCCATTTTTAATCAATGGGTGTTCCACTGTACTTGGAGGGAATTTTCGCATGAAAAGGATAAATATTTCACCGTTATACAGAGGAATTCCAACAAAGAGTGATTTACATGTATGCAGAGGGAGAAAATTGCTATTAAAAATTAGATGGTGAAATGGTAAATTTAATGGATTATAAAAAAGCGCTAGAACGTATTTTAATGGGAAAGCAAAGAAAAATCGATGTCGGAAGAATTGACGAAGAATATAGCATCACTGTAGTGGGGATTGGTTTGGATGGCAAAGTGGCTGAAGTAAATAATGTTTCCAAATACAAAAAATGGTTTAATTTTATTAGATTGGGTGCTCTTTCCTATGTACTTAGTTTCTTGCAAGTTTTATTAAAATACCGCCCTGTCAACATTCAATTAAATGTTGATGGGGAGAAGCTAGTTT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 3316977-3316251 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001483.1 Parageobacillus thermoglucosidasius TNO-09.020 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================= ================== 3316976 30 100.0 36 .............................. ACAGCCGATCATAAAGATCGGTTGAAATTTTTTACA 3316910 30 100.0 37 .............................. GAAGTACAGGATAAAAAGCCTGTACGGTAACATTTTG 3316843 30 100.0 38 .............................. TATGAATCAGACAGGAGCGACAAAACAAATTGTAGTCG 3316775 30 100.0 35 .............................. TTGCTAACGGCGAATCATATGTTGTTATCGACGTC 3316710 30 100.0 39 .............................. CGTCTAGCGGGATACGTTCGTCTTGAAGTATTTCTAAGA 3316641 30 100.0 36 .............................. TGATATGTGATACTTGATATTTGTTTCATCCCCCTC 3316575 30 100.0 36 .............................. GCTGCCACAACCGCAGAGACGGGCTTCATCGCCCGA 3316509 30 100.0 38 .............................. TGAAATAATGTCCGATGAGAAAGAAGGTGAAAAACTTG 3316441 30 100.0 37 .............................. CGATCATCAAGTCGCAGCAAGAAGCGGAACAAGCGCT 3316374 30 96.7 65 ....T......................... GTGGTCTGCGATTTGACAGCTTTCGTGTCGCGTGCATGTTTATATCTTATGGACCGATTTTGCCT 3316279 29 73.3 0 ....T.......G...C..A..-...TCC. | ========== ====== ====== ====== ============================== ================================================================= ================== 11 30 97.3 40 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : CGGATCATCATGCGATACCGGATGGGGCCGCTGGAGAAGGAAGAGGTGGCGGGCTACATCGAGCATCGGATGAAACAGGCCGGGGCGAAGCATCCGATCTTCACCCCATCGGCGTTAGAGGCGATTGCCCTGCAGTCGCGGGGATGGCCTCGGGTGATCAACACGTTGGCCACGACGTGCCTGTTATACGGGTATCAGCTGAAAAAGGACGCCATTGACGAAGAAGTGGTGCGCATGGCCGCAGAGGAAATGGGGTATTAGCACGAAAGGGGCCGAATCGGCCTCTTTTGTGCTTTCTCTTTTCCACCGGTCCATCAGGCGCGCTGGAAATCTTCATCTGAAAGAGCGTGCAAACGTTCCGAAAGAATGTGCAAAATCCGGAACAATCCACAAAAATTTTGCACATTATTTCCGAATCCGCCTGAAATAATTTGAAAAAGGGATTCTGAAATAATGTGCTAGTTTACATTATTAGTCCAACATAAAGAAAAAGGGAACGT # Right flank : CTTCTTGGCGCTTGCCGCTGTGAAGGGCTTTTTTGTTGTAATTCACCGCCACATTTGTTATAAAGGTGAAAAAGGGAAACAATAACAATAAAACAAACATGGAAAGAAGTTTTGAAAGCATGTTCCGTATTCTTAAAGCAGAAAAGACGGTTGATGTTTAAAATGCGGAAGTTTGCTGAATTGGAAGTAATATAACGGAAAGGGTAGAGTGTGGATGGGAGTATTGGACAGTAAAAAAATTATGGAAATAAGAAGCCGTATTGAAAAACGAGTAGTGACGCTGCCCGATGGCACTACTGTTCCATGCATAGGTCAAGGAACATGGCACATGGGAGAAAAGCCCCAAGAGAAAGCGAAGGAAATAAAAGCCTTACAACTTGGAATAGAATTGGGCATGAAAGTTATTGACACAGCTGAGATGTACGGAAATGGCGCTTCTGAACGCTTAGTCGGCGAAGCCATCAAAGGGCGCAGGGATGATGTGTTTTTAGTCTCTAAAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 3323100-3320127 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001483.1 Parageobacillus thermoglucosidasius TNO-09.020 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 3323099 30 100.0 35 .............................. TTTTTCCGTTGGATTTATGAGCGACAAAACACCAT 3323034 30 100.0 38 .............................. GGTTTTGAACAAACGATTGTAAATTGGACTGATAATTG 3322966 30 100.0 38 .............................. AATTCGTTGAGTGTTTCCCGTGTCAATTGGTTTTCTTG 3322898 30 100.0 37 .............................. TATCAAGACGAGTTGAAAGCAAAAGAGGAGTATGAGG 3322831 30 100.0 38 .............................. AACGAGCTAACGAAGAAACAAAAGAACTCATACAAGCA 3322763 30 100.0 38 .............................. TGATAAGAATGGTACATTGTTAAGCACACAGAACATTG 3322695 30 100.0 37 .............................. TGCACATGTTGAGGAAGGAATTTGCTTCAAATGCAAC 3322628 30 100.0 36 .............................. ACATAAAGGATGATGTGATATGGCGACGGTGTTAGT 3322562 30 100.0 37 .............................. TTTTTTAAGCAAGTATCTAGGACCATATTTGTTCACA 3322495 30 100.0 37 .............................. ATGAGTTGAGTTTCAACAGCAGATACTTCGTAGATAG 3322428 30 100.0 36 .............................. CGGCGTGTATAAGGAGGGCGGGCGATGACCGAACTA 3322362 30 100.0 39 .............................. TCGAACGTACTCGCGTTTCTTGCCGGAAAAAGGACGTCG 3322293 30 100.0 37 .............................. AAATCCTTGCGAACGTCTATCCGAACTTTGAAGTGTC 3322226 30 100.0 35 .............................. ACACGACGGCGACAGTGTAGAATTTTCGTCAAATA 3322161 30 100.0 38 .............................. AGCGATATAAAGCGTTGTACGACAGCGGGCTTGTATTC 3322093 30 100.0 37 .............................. TGGAAGCATGGTCATCCATTTTTGCTTCGTTGATCGC 3322026 30 100.0 38 .............................. GCATGAGGTGGAAGTTCAATCTCTTCATCGAACTTCGC 3321958 30 100.0 39 .............................. TTAAATATATTCTTTTTCATCTACACTTACGTAGAGATA 3321889 30 100.0 41 .............................. TAATCAGAAAGAGTAAATAATAAAAACTAAACAAAAGCCAA 3321818 30 100.0 38 .............................. AAACAAATGTCTGCAAAAGAAATAACTGGTTTATGGAA 3321750 30 100.0 38 .............................. AAGCAACCAGTGATGAAGCTATGTGGACGACATTTAAA 3321682 30 100.0 39 .............................. TTCCTCCATTCGTTTTATTTAGTTAGGTTGCAGGTGTCC 3321613 30 100.0 38 .............................. TTCAGAAGGCCCCGACACCCGTAACGATTATCAGAAAA 3321545 30 100.0 35 .............................. GCATTTGTGAAGCAGCGATACCTTTTGCCATCCAG 3321480 30 100.0 35 .............................. CAAGATGCGGAACTGGTTGACGAAAGCGAATCCAG 3321415 30 100.0 38 .............................. CTAGATGACAACCTAAAAGAAATGATTAATGCGGGTGC 3321347 30 100.0 37 .............................. TCGCCGTAATACCATTCTCCTTCTTCGCGCGAATGGT 3321280 30 100.0 38 .............................. TACACTCCGGTTGCCGCCCAATACAAGTCGGGCAGCAA 3321212 30 100.0 35 .............................. ACTTATAGTGGTGATGATAATCGTTGGGATGCTAT 3321147 30 100.0 35 .............................. TCCGTGTTCGTCGGTGTGCCTGTTTGCTCCATAAA 3321082 30 100.0 35 .............................. CTGTTGAAATACAAGATGATGCGTTTTTAGCGAAT 3321017 30 100.0 35 .............................. AACAAGGGCGGCGCGTGACCAAGTGGAACAAGGCG 3320952 30 100.0 37 .............................. CGGACAGCTTGAAGGCGAACAACGCTATGCCGCAGAA 3320885 30 100.0 36 .............................. CTTGTCTGATCCTGAAATGGAGCAATTTTGGACATT 3320819 30 100.0 35 .............................. TTTAGGTCTAGCTTCATCCCTCTCCCCCTCTTTCT 3320754 30 100.0 37 .............................. GAAGATATACAAATCACAAGAGATACAGAAAAACGCA 3320687 30 100.0 38 .............................. GCACTAACATTGCCGACAATGGCGGCGTGCCAGTATTA 3320619 30 100.0 36 .............................. TAATAAAAAGGAGGTCACCCACCATGTTCGATGTTC 3320553 30 100.0 36 .............................. TGTACTTTTTGTAGGCTTTTAATTCGGTTAGCTATT 3320487 30 100.0 35 .............................. CGATGTTGTTAACTAAAACAGTTGAAGTAGATGTA 3320422 30 100.0 36 .............................. TAATAAATGAAGTTTATCCGAACCTAACCGATGAAG 3320356 30 100.0 37 .............................. ATTTCTGGTACACATTCAACAACCACAAAGCGATCAC 3320289 30 100.0 36 .............................. AACGTAGAAAGTCATGGAGTCACAAAAAGTATGTAG 3320223 30 100.0 37 .............................. AAGCCGAAACTAGAAGGAAACTAGAAGGGATTTCCTT 3320156 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 45 30 100.0 37 GTTTGTATCTTACCTATGAGGAATTGAAAC # Left flank : TACGAAAATCAACATGGAGAAAAGCGGACGCATTTCTTTTCGCCATTTGACGCAGAATTTTCTAAGATGGTAGAAAAAAATTTTTATAATAAATTTCAAGCATATTTTCAACAAGCACCAACGGAGAAGGTGACAATAAGCCCAATCCGCGTAACGAAAAGGGATAAGGTGATTACCGTATTCAAAGGGTTCCGCATTAACGCGTGGAATGGTATGTATGAAATTCAAGCACCGCTCCCTTATGTGAAATTTATGTATGACGTCGGCATCGGATCGAAAAATTCCCAAGGTTTCGGCATGTTCGAATTCATTGAATAGCGGCCATATACTTTTGTCGTCGATCCCTAATAGCGCACAAACCCCAGGGGATCGACGACATGTTTGTTTTCTCATTTCTCCCAACAGCCATCAGCACTTTTGAATATTGACGCAATTTTCAAACTGACGTATACTTTATATATCCATTATTCGCCAACCTTGATATATAAGCGTTTGTTGGG # Right flank : TACTTGACTTATTAGTGTAAATTATCACTTTATTTCGGAACAAAAGAGCCATTTTTTTGCACATTCCTTCAGAAAGCCCTCTCCCCTTTTCTGAAAGAATGTGCTAAATTTTTTGTGAATTATTTCGGAAGAGAAAATCCATCGGTTCAGAGGAGGGGAGGAGGACGTGATTCAATTTCATGACTTTGGCATTGACGTCCAAACGTATGCAGAGCGTGGAAAAGAAAACGACTTCCCTCTTCTGAAACAGTGTCCGCATTGCCGGGTCAAGCGCCCGTTGCACCGCCACGGTTACTATGAGCGAAACGCATTGACCCCACATGGTGATTATCGCATTTGGATTGTCCGGTATCGCTGTCGGGAATGCTTGAAGACGGTGAGTGTGCTGCCTTTCTTTCTCCTCCCGTATTTTCAGTATACGTTGTCCGCCATATGGCAAGTCGTGAAAGAGCAGTTGGGATTGACCGAGGGGACGAACCAGGCTCCGTTCCTCCCGACAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //