Array 1 54693-54441 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017296.1 Nostoc sp. NIES-3756 plasmid pNOS3756_1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================= ================== 54692 24 83.3 33 .T...........T..T...G... AGCCTAGTGAAATCGAAATTAAAGAAACAATTG 54635 24 100.0 33 ........................ AAAAGGTAGAGAATTATTCAGACAGAACAATTG 54578 24 100.0 33 ........................ CTAAAAGTGATTTCCAAGACAGGGAGATGCTAA 54521 24 87.5 33 .......C..G.....T....... ACCCCAATGAATTGGAAATAGAAGAAATTCTTA 54464 24 87.5 0 .G..............T......A | ========== ====== ====== ====== ======================== ================================= ================== 5 24 91.7 33 ACATAGATGGTCAACGCCCAATTG # Left flank : AATGCAGATTTAACTAGAGCTAATCTGTCTTTAGCAGAACTAAGAGGAGCAAATCTCCACTTATGCAATTTAAACGAGGCGAATTTAACCGGAGCGAAGTTTATTGAAAGTCAGCTAGATTTTGCTCAGTCTTGATTCAGACAAAGTAACAGTTATAAACAAGTATTTCATGATAAGTAACAAATCACTCTCAAGTTAGAGATAAAATATTTGTTATGGTAGAGAGTTTGTTAATTTAATTATAGTAAAGTATTAAGTCTAACCAATAATTGATGATTCTTTATTTATATAAAATTTATCTTCATTATTTAAAAGTAAACAATTTTATAATTTTAACTTTTATGTAAACAAAAGTTTATAAAACGAAAGAGGAATTATGGATAATGTCAACCCGGTTGAAAATGATGAAAATAATTTGAGAAAGCAGGCAATTGTTAGCAAAGATGGGATGATTTCTGAATCATTATCTAAGGAACCGGAACAAACAAAGAAAACAATTA # Right flank : CTAAGAATAGTTTTGAAGTTCAAGGTACCTTAGAAGTAGATGGGAGTCGTCCAATCTCAGATAGTGTTGTTGAACAGCAAATGCCAACGGATTATATTGACTAAATTATATACGAGTTTTTTAGTTGAATTACCTGTAATTCAGTAGCTATAAAAGCCTGTTAATTAAGTTCACCTAGATGATCTATTGCTTATGACTTTTATTCATTAATAAGGTATATCTAACACCATTAAATTTACTGTTTTTGTTCCCATTGTATAAAAACAGTGCTTGTCTATTCTGAAATAAAGCCCACTATCACAGCACTATAGGAGACTCATAGTGATGACCCAAAAATTTTTTACAACTCAGCTTCAAGAGCAAGCTAACTACAACAAACCTGGACTCAGCCGAAAGTCTTTGGTTAAAGATGAGCAAGTGCAATTCTCACTCGTTTGCCTAACGGCGGACACTGAAATACCAGAACATGTAGCTTCACGGAATATTTCAGTAACTGTAAT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACATAGATGGTCAACGCCCAATTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 103855-104418 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017296.1 Nostoc sp. NIES-3756 plasmid pNOS3756_1, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 103855 37 94.6 40 ......................T...C.......... ATAGTAATGATCCATCGCAAGGTGAAGCGCCATCCGATGT 103932 37 94.6 38 ......................T...C.......... CTTGATATCTTTTAGATTTTTGATATCAATTGCTGTAA 104007 37 100.0 41 ..................................... CTTACCTACAAAAATTAGACAAACTAGCGGACAAAGTAGAT 104085 37 100.0 39 ..................................... GCCATGTTCATATCAAAAAGACAGTGTAGGCGTAACCGT 104161 37 100.0 33 ..................................... TCTATACTTCAAAATGTAGCTTCCTAGATTTTG 104231 37 100.0 35 ..................................... TCTAACAATTGGCTTTTGCGGACACCCAGACGAAA 104303 37 100.0 42 ..................................... AAAGCCTCAAGCCAGGCGCATACATCCGCAAAGCCCGTTAGG 104382 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 8 37 98.7 38 GTTTCAGTCCCCGTTAGGGGATGTGGGTTATGGAAAC # Left flank : ATTCGTCGATGTCACCTGCCCTACTCCAAGCTCTGCAAAAGGACGCTATTACTACAGTTGCAGTGTGTGGGGTTGATACAGATGCTTGTGTGATGGCTACCGCTTTGGGACTATTTGATGCTGGATTTGAAACATTCGTAGTGTCAGATGCTTGTGCTTCTAGCGGTGGACAGGAATATCATGAAGCAGCAATTAAGATATTAAAACGCAATATTGGCGAGAAATATGTGATTTCTTTTAGCGAATTGCCGACAATGTTGTCTTTGGGACTTGCATAAAAGGCGTTGCACAATCAGAATATGAATTATGCGATTGTCAGACACCTGGATGACTAACGCTCTTAAGTGTGAGTTTCAGTCCCCTTGCCAGCTAATAAGGCTTATAAACTCGGTGCAAGTCTACTTTTGTAAATCCCATCTTTTGCGTGTTTTAATCCCTTTGCGGGGTAATAAGGCTTATAAACTTTTGGTCATAGCAGGTTTTTCAGGAGTTGGTAAGGA # Right flank : CCGCTCCGTGCTGAAACTTATACAGAGCAAGCTTCCTGGGAAGCATTTTGACGGATCAAAAATTTAGTCCATTTTCAGCCGCTCTTATTGCAAGTAATTTGCAACTCCCCTATTATTAAAAACGCTATAACTATTCTGTTTTCAAGTTTCTGGCGATTTTGGCAAATCTTCAGGGTTTTTGACCCCGCTTTGACTTGCCAAACATCAAGTTGATTCTACAATCATAAGATAAGTATTTTCTCTTGTCGAGTGCTTCAGCAGTTTAATCTGTAACTCCGTACTCTGCCTCAATCATACTCAACACTTTTTCTTTCAGTGCTGTCAAATAAGCCCGATTCAGCTTCCCTAGCGATTCCAAAAATCTCTGCACCGAGTCCTCCAGCCCACTCGAATATACCCGAATGATGCGATCAGCGAAGCTGGGCGTTCCGCCATCGCAGATCAAGAGCATCTGCTGACACTCAGTAGGCAAGTAATTAAATGACTTCAGGTGCTGCGAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCGTTAGGGGATGTGGGTTATGGAAAC # Alternate repeat : GTTTCAGTCCCCGTTAGGGGATTTGGCTTATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 754311-755527 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017295.1 Nostoc sp. NIES-3756 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 754311 37 100.0 42 ..................................... CAATAACTGAAGTCTTATCAACAACAGGTATATTGTCACGAA 754390 37 100.0 37 ..................................... TCCCCCTTTATCTGGACAAGCCAGAACCCAGGCAGCC 754464 37 100.0 37 ..................................... GGTGTACCTCTAACCGATGCCGGTTGGCAGATTATTC 754538 37 100.0 37 ..................................... GCTAGACAAGCAATTTCTATTCCCTTAAATTGGGAGA 754612 37 100.0 36 ..................................... ATCTCAAGCATCGCTGGGATAGATTGCCACACGGAC 754685 37 100.0 33 ..................................... ATACTTTCACCTGACTGCTTAAAACTACTCTCC 754755 37 100.0 34 ..................................... CCTGCTTGCCTAACTTCATTAACTAGGGTGTGGC 754826 37 100.0 37 ..................................... ATTTTGTTGCGTCCGTTAGCGGTAGCCTCAAACACTA 754900 37 100.0 37 ..................................... ATATTTATATCGTTAAGGATAGAATAGGCGAGATATT 754974 37 100.0 36 ..................................... CGATCCGGTCGTGGTTAACCCGTTATCCAAAATTAT 755047 37 100.0 35 ..................................... TCTACTACTCCCTGAGACAAGCTAGACTTAACTAA 755119 37 100.0 42 ..................................... TATTTAGAAGAGTTTTTATTAATCTTCTGTAATCCTTGGATT 755198 37 100.0 33 ..................................... TGCCAGTATCTAGCCAAGGACTTGTGGCATTGA 755268 37 100.0 38 ..................................... TCTGTTATAGGCAATGATGCCATTAGCATATAAACCAG 755343 37 100.0 37 ..................................... ATTCGATCAATCAACATAGGCGAAGAAAAATTTTCAA 755417 37 100.0 37 ..................................... ATAAATTTTACTATGCAACTATCACCCTGGTCTGTAG 755491 37 78.4 0 .....T....A.T.....T.T.G......G......G | ========== ====== ====== ====== ===================================== ========================================== ================== 17 37 98.7 37 GTTTCCATACCTCAAATCCCCTCACGGGGACTGAAAC # Left flank : GACTAGCATCACGGGCATTGTATATCGAGCGGGCAACAATGGCACAGCAGAGGATTGTACCCTTAGATGAGGTTGATCCAAATGAAGTACCTTATTTTGCCATGATTGTTATACCTAGTAAAAATCGGCTGTAGCAGCTTGATAAAACTGAGCAAATCAAATTGATGTGCATCACCTGGTTGCTTTTTACCTCGGCGTTTTGGTTTGGTTAAGAGCAAAAGTACGGTGTTACAGATTAAGCAGCCAAAGCACTCGACAATACAAAATACTTATCTTATGATTGTGGAACCAACTTGATGTTTGGCAAGCCGAAGCGGGGTCAAAAACCCAGTAGATTCGCCAAAATCGCCAGAACCTTGAAAACAGAATAGTTACAGCGTTTTAATAATTCGGGAAGTTGCAAAATTATTGCAATAAGAACGGCTAAAAATAGATTAAATTTTCGATCCGTCAAATCGCTTCCCAGGAAGCTTGCTCCATAATAGTTTCAGTACCGAGCA # Right flank : GAAATATCGATCTACTTCGACTAAAAAAGATATTTCTTAAGACTTAAGCAAAAGTCTCTAATATGTGGTTAAAGTTACGTTTGTAAAGCGTTGGATTGTAATTTTGCCAATCTAAGTCTGAAGAGTAAGATAATCTTTTTAATGTAACCTGTTGCACATACGCCATTAATGGCCGACGCAGCGATTAATATTTTTGGAAAGCTGTATCTATAGCTTCTCTATCATCCCAAATATGATAAAAATATTTGTTTCCTAATATTTAATACCAATTGTTTAACATTCCACAATAGATTTAAGCTTTTAAAGCTAGATTCTGTCTAATCGTAATTACAAATTACTATCACCCCTAAAACACCCAAGAGGATTTCTCATGTCTAACTCCGAACTAGATAGAGTCATTGTTCGCCCTGTGGATGAGTATAACCAGAGATTGGTTGCTTATGTACATCCACCCAATTGGGTGAATCCTCAACCTGCGGAGACTTATGATTTGGTAGTTA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCAAATCCCCTCACGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 2841554-2840584 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017295.1 Nostoc sp. NIES-3756 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================ ================== 2841553 31 100.0 41 ............................... CACTCTCGTAACATTTATAAAAACGGAAAGGACAAGTTTCC 2841481 31 100.0 40 ............................... GGGATGAGTTTATCGATACCGTTAAACTCTAAACGTTTCC 2841410 31 100.0 40 ............................... TACAACTCTGAGATTTGGGAAGTTCCTCCCGAACGTTTCC 2841339 31 100.0 40 ............................... TTGCTCCTACAGAAGTAAAGATGATTGGTTGCTTGTTTCC 2841268 31 100.0 43 ............................... TCCATGAGCAGCGCTCAAACCCTGATTCTGTCGTTGAGTTTCC 2841194 31 100.0 39 ............................... ACGTACTAAAAGTAATTGGTACACCGTCCTCAAGTTTCC 2841124 31 96.8 41 ......A........................ TCACCTTGCTTTGCGGTCATTGTTTTACCTCTTTTGTTTCC 2841052 31 100.0 41 ............................... TTCTAAGTCTAATGATGAACGTCAAGCAGACCTTTGTTTCC 2840980 31 100.0 42 ............................... AACAACAATATCTATGAGTTTAAAAGAGAGACTTTAGTTTCC 2840907 31 100.0 41 ............................... CAGGAAATTCAAAGCGGTCAATTGCAATTAGAAACGTTTCT 2840835 31 100.0 42 ............................... CAGCAGCTAGTAAAGGTGTAAAAACTAAATATTTGAGTTTCT 2840762 31 100.0 44 ............................... ACTTCTACCTTAGCTTTTACTAAATCCAGGGCATTTATGTTTCT 2840687 31 100.0 42 ............................... TTGAGGCTTTGTAAACATCCGTGTGTTTGTGCTGATGTTTCC 2840614 31 87.1 0 .....CT...................A...A | ========== ====== ====== ====== =============================== ============================================ ================== 14 31 98.8 41 ACAAATCATTACCCCGCAAGGGGACTGAAAC # Left flank : GCAATCAGTAGGATTTAGACGAAACTGCACATGCTGTGCTGAAGCATTTGGGGGAGTTCAGGCGATCTTATTTGACCAGTGTAGAAAAGAAGCTACTAGGTTTGATAGAGAGAATAATGTGTAATACCGTTTCACTTTAAAATTGATACACATAGACAGCAGGGGTAGGGGGAAAGAATTTAAAGACTAATTATTTGTATCAGGTATTTCGTGAAATGGTGTAACAAATTAAACTCTTCAAATCACTCGACAATATAAAATACTCATCCTATGATTGAGTCATCAGCTTGATGATTGACAAGCCGAAGCGAGGTCAAAAACCTAGTAAATTCGTCAAAATCGCCAGAACCTTGACAATATAATAATTATAGCGTTTCAACTATTGGGAAAGTTGAGAATAAGTTGCAATAATAGCGGCTGAAATCGACCTATTTTTGAGGTTCGCCAAATCACTTCCCAGAAAGCTTGCTCTCGTTAAGTTTCAGCACTGAGCAGTTTCC # Right flank : TTAACTGCCTAAGTAATATAAACTCCGGATAATTACTGACGATTAAACTCCAGTCTGAAGCTACCAGTGAAAACCAGTTGACGGTAACATTTTTCTAGCTCTTCTATACTTAAATGTTTGGCTACACTAATTCGTTTCGACATGACTCATCTTTGCTCTGTCTGCTTTTACCGTCAGTGATTATCCGGACATGAGATGATAAATGGCTAACCAACAAAAAACCCGCCTTGGCGGGATAAACACAACAACACTATGAACGATGAACCTGAACTTTAAGCGAACTGCCTTAACTCAGCTTCTAGTTGCCTAATTAGTCTTTCATCGCCTTTAGCTCTAGCTACTTCCAAACGATGCTCTATATTTCTTTGAATATTTTGTCTGTGTACTTCTTGAGCTGAACTATTAGCCTTGAGTCTACCTTGGCTCATAGGATTGACCTCTTAATTCTTCTGCATTATGTCTGTTATTCATAACATAGCATAAATTTAGTAGTTTATGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACAAATCATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 2928882-2929583 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017295.1 Nostoc sp. NIES-3756 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2928882 37 100.0 39 ..................................... CACCATAATGAGCGGCGTTGACTACTTGTAAAGGGGCAA 2928958 37 100.0 32 ..................................... CAGTATGAATGCAGCCGCCGAAGATTGGTTAG 2929027 37 100.0 41 ..................................... TACGAAAGTCGCCGTTAACTGGGCGAATATCTAAAGCTTTG 2929105 37 100.0 38 ..................................... GCTTCTTTTTTCCCATCTGGTTTGACATTCATAGTTCT 2929180 37 100.0 31 ..................................... GACCCTAGAGGAACAAGTATTAACTGTTCTG 2929248 37 100.0 37 ..................................... TTCCGGCTGCGGCCCACAATACTGAGCGGGGTACTAA 2929322 37 100.0 43 ..................................... CCGCATTCTTGCCCACCTCTACTGAGCATCAGGATGACTCCTA 2929402 37 100.0 38 ..................................... TTCCGCAGTTGGGACAATCCCACTCTCTAACATTCAAC 2929477 37 100.0 33 ..................................... AAACCATTCTCAAGCCTCGACTTACACCCCCAG 2929547 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== =========================================== ================== 10 37 99.7 37 GTTTCCACAAACTTTTACCCCGCAAGGGGACTGAAAC # Left flank : GATCGCAGGAATAACTTTATCATTTTCTTGTGTGTGGCTAACTGTAGCGGCTGTATTAGTATTTAGAATTTGGCAGCTAAATGGATCTGAGCCATTGTATCCTTTAAAACTAACAACTGTGGAGAAATAAATTACAGGGCAAAGAAGATTTAGAAGCAACTGCCATACTGTTCTCAAACATTAGGGAGAGCTAAAACCCTTGAATTTGATTAAGTAAAAGTACAGTGTGACAAATTAAACTTCCCCAACTACTCGACAACACCAAACACTTATCTTATGATTGGAGAATCAACTTGATATTTGGCAAATCGAAGTGAGGTCAAAAACCCTGGAGACTCGTCAAAATCGCCATAACCTTGACAATACAATAATTACAGCGTTTAACAATTGACAGAAGTTGCAAATTTATTGCAATAAGAACGGCTGAAAATGACCTAAATTTTCAACCCGTCAAATCCCTTCCCAGGAAGCTTACTCTGTAATAGTTTCAGCACAGAGGG # Right flank : TCGCACTATTACAGATGCAGCAACCAAACTCCCTAGTGTTTAATATGACCTGAGTGCATAAACCCCACTTGTAACAAAATCTGTAACAGTAATAGTGTTTGACCGTTTACTCGGATAGATTAGGGAGAAATTTATGGGTAATCCCCGCATATAGGGGTAATGTGCTAAAAGATATACGCGACTATCAAATTCTCTTTTTGGGTTTATTTCTGGTTTTGGGAATTGGGACAAGAGATTGGACTTTGCACCCAGAGTTTATCGCTGTGGCGATCGCTTTTTGTTTATCAACTCAGTGGCTATTATCATCGGTCATTAGTTATTGGTCATTTGACAGTAATCAAGAACAACAGCCAAAGATAAATCTGCGTAGCGCCTTGATTACGTCGCTAGGACTCAGTTTGCTATTACGAACTGACCATTGGACAACAATGGCATTAGCAGCCATCAGTGCGATCGCTAGTAAATTTTTCTTTAAAATTGGCGATAAACATTTCTTCAAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACAAACTTTTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 4255640-4254503 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017295.1 Nostoc sp. NIES-3756 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 4255639 37 100.0 37 ..................................... GAATATCAGCAACCATCAAGGCACTAATGGCACATCA 4255565 37 100.0 34 ..................................... TTGATTTCTTGACTCAATGCACAAAGCCGATTGA 4255494 37 100.0 37 ..................................... GTTAACAAGTACACACATAAATTTAAAACCAACTTTA 4255420 37 100.0 35 ..................................... GGATTTCTACAGGTGGTAGTATATGGTCGGCAAAT 4255348 37 100.0 35 ..................................... TTATTACTTCATTAGATGACCCAGAAAATTTAGGT 4255276 37 100.0 36 ..................................... AGAACGTTGGCGGTTTTCACCACACGGGGTTGCAAG 4255203 37 100.0 37 ..................................... ATTATAAAATAGCCTCCCCTACCTACAGGGAGGCTAT 4255129 37 100.0 36 ..................................... CGATCGCAGCTATGTTAGGGCCACATCTAATTTTAG 4255056 37 100.0 42 ..................................... TCCTCAATTAACAAACTTAAACAATAACCTTCTGCCTTCTGC 4254977 37 100.0 36 ..................................... GCCTGACTGGTGGATTTAATTTACTCAAGGGTGGTG 4254904 37 100.0 32 ..................................... CTGAAAACGAGATGCTAAGGCGAGAGAATGAA 4254835 37 100.0 37 ..................................... ATCTGAATCAATACAGTAAATATTATGCTTGAGAAAG 4254761 37 100.0 35 ..................................... CGCCCCATGATTTCTCCTAAATTTCTTGACATTGC 4254689 37 100.0 39 ..................................... TCAGACCTCCGGGCGGCCTTGGCTGTATCGACTCGCCAA 4254613 37 100.0 37 ..................................... AATACTCTCCTTTTTCGGATAAAAAGCTTCCGTACTG 4254539 37 70.3 0 ......CT.G.T.................TAAACT.G | ========== ====== ====== ====== ===================================== ========================================== ================== 16 37 98.1 36 CTTTCAACTAACTAATTCCCCTCACGGGGACTGAAAC # Left flank : ACTACACTGTTTTACTTAATTATTTATGACCTGCCAGATAATAAGGCAGCGAATAAGCGCCGGACTCGTTTGCATAAAATGTTGTCCGGGTATGGTAAATGGACGCAATACAGTGTATTTGAATGTTTCCTAACATCTGTACAATTTGCTACACTACAAACGAAAATAGAAAAACTTATCAAGCCCCATGAGGATGCTGTGCGAATATATGTCCTTGATAGTGGTGCAGTCAAACGGACAATTACTTACGGTTCCGAAACACCTCGACAAGAGCAGGCGATCGTCATATGATTGATACATAAGTTTGATGTTTGGCATATCGAAGCGGGGGCAAAAATCCCAGTAGATTCGTCAAATGGCCAGAACCTTGACAATTCAATATTTTCAGAGTTTCAACAGTTTCAGTGAGCAGTGTTTGAGCTTTATTTCTTAGTCAGAAGAAATAGATCCGTCAAAAATTGATTTATAACCTGCTCATAGACTAAGTTTCAGATGGCGGA # Right flank : CCATGAGAATTACAGATTTATTACAAGGGATAGGCTTCCAACTGGCTAATTCCCCTGTAATTAAGAAATGGGGATTGGTTGTTAAGCTGAAAGGAAAGTTTTCACTTGACCGAAACGGCGATCGCGTTTTTGATAACTTAACAAAGCTTGATGAAATGCTTCTGTATCAAAATCAGGCCAGAGAATATCAGTAAAGTACATCTCTGTGTACGCCATTTGCCACAACAGAAAATTACTTAACCGCATTTCTCCGCTAGTGCGAATCAGTAAATCTGGTGCTGGAGTCTCTCCTGTATGGAGATATTTTTCTACAAGGCTTTCATTGATGGTTGCTGCATCCAGTTTACCTTGTTGCACTAGTTGAGCTAGTTGACGACAGGCTTTTGTAATTTCGTGACGGCTGCCGTAGTTTACAGCAATAGTAAAGTGAATTGCTTGATTATTCAATGTTTGTTTCATTGAATGTTCCATTTCTGTTTGCAGAGATGGGGGTAAACCCG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACTAACTAATTCCCCTCACGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 5 4324574-4324245 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017295.1 Nostoc sp. NIES-3756 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 4324573 37 100.0 36 ..................................... ACAAAGCGAGAAGAAGGGGTAGAAAAAACATATAAG 4324500 37 100.0 36 ..................................... TATGACCGCTATTACGACTCTAACCACCCTTGCCGA 4324427 37 94.6 35 .............................A.....G. ATAAAACCTAGTCTTTTACTTAACAATAAACTTTT 4324355 37 100.0 37 ..................................... TGTACAACCAAGCCCCAAGGCTCTTTACAAGCCTTGA 4324281 37 83.8 0 .........T.....T..........T..A..A...A | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 95.7 36 GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG # Left flank : TAGATTATCTGGCTCACCGTGCATACACCAATATGCCACTGTTCTGTGCGAGCAGCCTAAAAATTTCGCAATCTCCTGTTGCGGTTTCCCATCGTTCTGGAGCAGAATAATTAGAATTCTTTCCCTAACATGCGGCTGTTCGCTCTCTTTTAGAGCTTGCTGTAAGGAGCTAACTTGTTCTGGCGTTAAAAAGTTCTTGGCTGGGGGCGGCATCGTCGCTTTTAAACTGCTTCATTTTCTTATTATGCAACTTAAGTGCCGATTAGCTTATCTAGTCGAATTACATGGTGGTACAATCCAGGCAGAAAGCCCAGGAAAAGGACAAGGAGCTACCTTTACAGTCCGGTTACCATTGCATAAAAATCCTGAGAACCAAGTCTTGATTAGTAAGTCTAATGTGGCAGAATTGGATAATCAAGATACATTATTAGCAGGAGTGCAATTAGTTATTCGACAGAAAGACCATTTCCACTGCTTCTTCAGGAGTAGGGAGAGGTTCG # Right flank : CTACACATCAACCAGAAAAAGGTATTGATAAGACAAATAATTTATATTTAAACAAAGGTGGGTTGAAAGGCGCACTTCGTTCGGGAAATCCTGAACTAAAGCACTAACAATAAATTAGGACTATGATTTTAATAGTTCCTAATGTTGATAGACTCTCATTATTAAGTCATTTGTCAATACAGACATTAATTTGGCAAGACGGACAACAATTTGTCAACGCGGACAAACAATTTGGCAGTTGACAACAGGACAAATCGGGATGACTGGATTCGAACCAGCGGCCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCTACATCCCGTAGAGAAAATTGCGAATCTCTGCCATAATAACATAAATAATAGCATATTTGCTATTACATAATTAAATTACATAAAGTGTTGGCGGTTGACAGCCAAAAGAAAAGATTTGTAGATCAAAACACATCTATATATATAAATGAATAGGAAAGGAATTTGCTTGCTAGGATTAGA # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 6 4427741-4429032 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017295.1 Nostoc sp. NIES-3756 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 4427741 37 94.6 38 ....T.........A...................... GCATGACAGGTACATGTTGTTTCATATTTATATAGTTT 4427816 37 100.0 37 ..................................... AGTAGGTGCTGTATCTGTTACTTTCTCATCTTTAAAT 4427890 37 100.0 37 ..................................... TGGCTCATAAATCTCCTAAATAGGTAATAAAAATTGC 4427964 37 100.0 39 ..................................... GAACAACTTGATAGAATGTCTCCGCAGGAGAGAGAAGTT 4428040 37 100.0 38 ..................................... CCACTACCTCCACGCAGACAACTTCGCTGAAGTGGCAG 4428115 37 100.0 35 ..................................... TATTGTCTTATTGTCCCACGTTCGTAAACGTCAAG 4428187 37 100.0 35 ..................................... CGCAAAGTGTTATCAACAGAGACAGAAACATTAGT 4428259 37 100.0 35 ..................................... TAGCGCGGCAACCCCTCACCGATACCTACGGGCGT 4428331 37 100.0 36 ..................................... TTTGGTTGACTCACTAATCAATACTAGCTGGTGAAT 4428404 37 100.0 33 ..................................... CTATCTGCGTCTTGGGGGAGGACATATTTTTTT 4428474 37 100.0 36 ..................................... TTCTAAATCTGGCGGTAGTGGGTTGAGGTTGGGGAT 4428547 37 100.0 41 ..................................... CCGCGATGGTGTTGCTTCTGGTTAGTTTGTTCATGGGTGTC 4428625 37 100.0 37 ..................................... GGAAAGGACAGTGGACTGTAGGACTTCGTTGGCTGTT 4428699 37 100.0 38 ..................................... CATGATCGGCAGATGGTGTTGATTGATATTGGTGGGAC 4428774 37 100.0 36 ..................................... CTTTAGCCAGTGCGGCAAATTCTTCGGCGCTATTGA 4428847 37 100.0 39 ..................................... CCCGGATTCAAAGTTCTGGCTCAAAAGATTTATTTATTC 4428923 37 100.0 36 ..................................... GAAGCTAACTTTATCATTCCTATACTCAAGCGTTGT 4428996 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 18 37 99.7 37 GTTTCAGTCCCCGTGAGGGGAATTAGTTAATGGAAAC # Left flank : AAAGATTTTGGCTTGATTTGTATGGGGTTCTGCTTGATCAGCCGCTACACCAGACAGCCACGGTACTACACTCCATCGCCAAGGGTAGTTATTTTCTGGCAAGCCTATTCTATAAGGCTTGGGAACAGGTAGAGTTAATTGCTCTGCCAGTAATGGCAGCCAAGTTTGCTCATTTTCGATGAGTTTTGCTGCTATTGTACGACGTGGGAGCCTCACACATAAGCGATCGCCTAGTCGAAACATTACATTATCCCAACCAGTATCAACAAGATGAATTGGTAGCTGCGCCAAATCTGGATGCTGATCTGATAACAAACTATATACGAGGGTTGTATCTATTTCCATCTCCGATACTGGCGTTCCCATTGGATGCAACTGTGCCTCTAACTCCATATTTGCTTCCTTTAATTTGTTGTGTCTTTAAGCGCCAAATTTTTGATATACGCTACTAAATCTTTGTTATGCACTAAAATTCTGCCAAATGATTAAGAAAATTTTGA # Right flank : CAGCTCTGTGCTGAAACTATTACAGAGACAGCTTCTTGGGAAGCGATTTGACGGATAGAAAAATTAGGTCATTTTCAGCAGTTCTTATTGCAAATAATTTGCAACTTCCCTGATTGTTGAAACGCTGTAATTATTATATTGTCAAGGTTCCGGCGATTTTGACGAGTGTGCGGGGTTTTTAACCCAGCTTTGACTTGTCAAACATCAAGTTAATTAATCATAAGATGAGTATTGAGTATTGTCGAGTGTTTTCTAGAGTTTAAGTGCTAACTTAGTACCCGTTTTTAATCAAGTATCGTCAGCTTGTGATAAATTTACTCTTAGTGTAGGCGATCGCATTACTCTTTCTCAGCCCTGGATTGCATTTTTCACAAAAATTGCACTTAACTGTGGCGATACTGCTTAAAATTTGAAAAATTTCCCCTGAGAATACCAAGTACGGAGTCGTGCTGGTTTTATTTTAAGCAAGTAAGCAATAATCACAATTTGATTAATTAGTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCGTGAGGGGAATTAGTTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 7 4542288-4541662 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017295.1 Nostoc sp. NIES-3756 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 4542287 37 100.0 41 ..................................... AAGCCTGTGCGGTTGCCGCTTGGGGAACCGCCGTATTAGTA 4542209 37 100.0 39 ..................................... ATCTCACGGCGTTTAGAGCCTTTCTCCTGCCTTGCTAAC 4542133 37 100.0 34 ..................................... AATAAGTTTGGATTCCTGGGGTGTAATTGCTTGC 4542062 37 100.0 37 ..................................... TTTACCAGAACATAAACAGCAGTTAGAACAAACTGAG 4541988 37 100.0 33 ..................................... ATTGTTCCCGAAGTTTGGCTAGTTCAATCAATA 4541918 37 100.0 35 ..................................... TTTTAACAATTACGTCATTGTCAAAGCACAAGTAA 4541846 37 100.0 32 ..................................... GATCAGGGCGGACAAGCTTGATTGACTTGAGA 4541777 37 100.0 42 ..................................... TTTATTGTTGTGATTCTGTCTATCTTTGTGAGTTGGAGCAAT 4541698 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ========================================== ================== 9 37 99.7 37 GTTTCAACTCACAACTTCCCCTCACGGGGACTGAAAC # Left flank : AGTAACAGAATTGGTGTTCCTCCCCTACCCTGGTGTATGTATGTTGTGAGGATTGGTTGCTGGCTGAGGGAAGTTGTAAGGGGAATCCTTTCTATATTTTCCACGAAAGCGATCGCCTCTGCATCTTTGAGTTGATTTACTTGTGATGGCAGAAAACTGGGAAACATTATACTTATAGTTGAGGACTGTAGAAGGAAAGCTGCTGGGTGTGATTGCGAAAGAATACGGAGTTAGCAATTAAACTCTAAAAAATACTCGACAATCCTAAATACTCATTTTATGATTAGGTAATCAATTTGATTTTTGACAAGTCCAAGTGCGGTCAAAAACCCCGGAGACTCGTCAAAATCGCCAGAACCTTGACAATATAATAATTACAGCGTTTCAACAATCAGGGAAGTTGCAAATAATTTGCAATAATCACGGCTGAAAATGACCTAATTTTTCCATCCGTCAAATCACTTCCCAGGAAGCTTGCTCTGTAATAGTTTCAGCACAGA # Right flank : TATTATGACAGTATTTTTACTGAATTTAACCTTTTGCTAGGCATTTCTTAATCTAACTGAGATAGCGTGAAACACTGAATCCACTATTGATATAACTGTGCGTTGACGATCGCTCAAACTGTGAGGTACATCTTTGCAGTTTAAATTTTCGTGCCAAACCGCAAGAAGATATAGCGATCGCCTATTGCTTCCACACAAACAGAGCTGAGATTTTAAGTGTAGCCGCAATCTATGGTAACTACTAATTCTGTTCGCTTCTCTCAGTTTAACGCCTCCCTCAATCGCAACGCTGAGGGTCAGCTAATAACTGATTTATCTACCCCCGATAATGCCCAAGCAAAAGCTGTAGCTGAGATTATCCAACGTAATAACCCGGATGTTCTACTAATTAACGAGTTTGACTACGTTCAGGGAAACCCACTACAAGCAGTTCAACTATTTCAGCAGAACTACTTACAAGTCAGTCAAAATGGTGCTAATCCTGTTGAATACCCTTACGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTCACAACTTCCCCTCACGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 8 5091961-5091632 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017295.1 Nostoc sp. NIES-3756 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 5091960 37 97.3 36 ..........T.......................... ATGAAACTTTTGGCGAGCGCCCAAATAGAATTAATG 5091887 37 97.3 35 ..........T.......................... GATGGCTCGATAAACGAAACCATCTCTTCTAGTTC 5091815 37 100.0 36 ..................................... TAGTTGCGATTATCGAAAGCTTTACCATTGAATAAA 5091742 37 100.0 37 ..................................... TCTAATAAAAGTTTGTCCAGACTCAGCACGTAGTAAG 5091668 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 98.9 36 GTTTCAACGACCATCCCGGCTAGGGGTGGGTTGAAAG # Left flank : TTTAATTCACTAATCTGAACCTTGAAAATATAATATTTGTATAACAGCGCCGCAGTTCATGCTCTTTTGAGCCAATGTACTGTGATAAATCTGGGTTAGTTTGGCAGTTGGAAGACTGTTATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCCATCTGTAGACTTCTATAGATGGGATAGGTGCGCTCCCAGCAATAAGGAGTAAAGCTTTTAGCTGTAACCGTTATTTATAACGGTGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCCCAAATATTTTTTTGGCGAATCGAAGCGGGGTCAAAATCCCTGGGGACTTGCCAAACTCTGAAAACCCTTGTCCTGTATTGAATCAAAGAATCATTTTGTAAATTGATTTACTATTTTGATTTTCAGCACAAGCAGCTTTTTCAGGGACGTGTCAATTAGACATCTGAAAAGCTTGTATAACAAGGGCCTAGACGGGAAAA # Right flank : AGTAAGAAGAATAGAAGTAATTTCCTGAAATCAACTATATTTGGACATATTTTAGGAATATAACTAAATTATGGGAGGGTTGAAAGGAGCGCTGCGATCAAACAAATGTTAAGGTAAAATAATTCGTCTGTAGCAAATACCACAGTTAATGAGTAAGCCATACGACGTTAATTTGCGAAAAACTAATATGATTGAATTAACGACGCGAATTAGCGAAAGTAATGTTAATTACCTAAAAACGACATCAATTTGCGAAAAGCGACAAATAATGTGCGAATGTACACATATGGAGAATAGGGAACTCGAATCCCTGACCTCTGCGGTGCGATCGCAGCGCTCTACCAACTGAGCTAATTCCCCTGACTTTGTTGAGTGTTCAGTTAATCACACTCGTCCATCATAGAGTATTTTAACATTCAGTTAGGGATGGCTGAGATTTGTTGCCAGAAAAAACTTCTTGTACTCGCTCTAGTTCTAATTCGCTCAGATAATCCACAGTC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACGACCATCCCGGCTAGGGGTGGGTTGAAAG # Alternate repeat : GTTTCAACGATCATCCCGGCTAGGGGTGGGTTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //