Array 1 43170-43442 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLWT01000051.1 Escherichia coli strain MOD1-EC6494 MOD1-EC6494_51_length_54456_cov_50.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43170 29 100.0 32 ............................. AGATTTGTAGAAAAATAGTCATTCTCTGCCTG 43231 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 43292 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 43353 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 43414 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCATTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 57516-55657 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLWT01000035.1 Escherichia coli strain MOD1-EC6494 MOD1-EC6494_35_length_60834_cov_48.7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57515 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 57454 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 57393 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 57332 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 57271 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 57210 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 57149 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 57088 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 57027 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 56966 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 56905 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 56844 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 56783 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 56722 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 56661 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 56600 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 56539 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 56478 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 56417 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 56356 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 56295 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 56234 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 56173 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 56112 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 56051 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 55990 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 55929 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 55868 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 55807 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 55746 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 55685 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //