Array 1 24704-25646 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRMW01000014.1 Escherichia coli strain BX1S11 NODE_14_length_151971_cov_122.248, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24704 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 24765 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 24826 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 24887 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 24948 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 25009 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 25070 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 25131 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 25192 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 25253 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 25314 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 25374 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 25435 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 25496 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 25557 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 25618 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 102841-104394 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRMW01000017.1 Escherichia coli strain BX1S11 NODE_17_length_104953_cov_124.02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102841 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 102902 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 102963 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 103024 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 103085 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 103146 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 103207 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 103268 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 103329 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 103390 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 103451 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 103512 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 103573 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 103634 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 103695 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 103756 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 103817 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 103878 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 103939 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 104000 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 104061 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 104122 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 104183 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 104244 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 104305 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 104366 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCTGATCTTACCCAGCAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //