Array 1 4345153-4339323 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024616.1 Shewanella algae strain TUM17384 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4345152 29 96.6 32 .A........................... CCCCTCGGCCGCTTCGCGTCCTCACCCCATTA 4345091 29 96.6 32 .A........................... GTTTTTGCAGGACTCAGCAAACAATCAATAGA 4345030 29 100.0 32 ............................. TTCTCTTGGGGTGTTGCCAAACTTGTTTTACA 4344969 29 100.0 32 ............................. GGTAGGGTTATGACCAGCAGCATCCAACTCGT 4344908 29 100.0 33 ............................. CTTGCATCTTTGGCAATGGGCCACCGCGCATAC 4344846 29 100.0 32 ............................. TCCCGTATTAATCGAAACGGGCGGCGTGTTGT 4344785 29 100.0 32 ............................. CTCTGGCGCGTTTCAACCCAGAATGATATCGG 4344724 29 100.0 32 ............................. GCGATTGCTTGGTGCTTATCAAAACCGCTGAC 4344663 29 100.0 32 ............................. TATAGTTTGTGGGCCTGTGGTGTACTCCACGC 4344602 29 96.6 32 .A........................... CTCCCGTGTTTTCTTATCGTATCCGACTAGTG 4344541 29 96.6 32 .A........................... CCCCTTGAAACCATAGAGAGTATTTTGGGTGA 4344480 29 96.6 32 .A........................... CTGCAAAGCGGCAGCGATTCTTTCTTGTGGGC 4344419 29 96.6 32 .A........................... GTCGTATTGAGTATGTTATACCCATCGACCAA 4344358 29 96.6 32 .A........................... CAACTCAACTCAGGTGAAGGGCTGACCATTGT 4344297 29 96.6 32 .A........................... ATGCTTGCCGCTGTGGCGGTTATGATGTGAAC 4344236 29 96.6 32 .A........................... TATCGTGATAAATATCGCCTTGTTGGTCGATG 4344175 29 96.6 32 .A........................... TCAGTTACCCGACGGGGCAACTGGTACTTATC 4344114 29 96.6 32 .A........................... AAATGTTTCTCATTGTTGGTGGCGGTTTTGAA 4344053 29 96.6 32 .A........................... TGATCGCCATTAGATGCACCCCTCTACGAACT 4343992 29 96.6 32 .A........................... TTTTCAGACGAGTATAACGGTGGATATTGGGA 4343931 29 96.6 32 .A........................... AACACAAACAAGAGTTAGCCCAACAATCCAAA 4343870 29 96.6 32 .A........................... AAAACACGAGAGCTTTTAGGCGGACTGGTTAA 4343809 29 96.6 32 .A........................... CCTCCCGCTGTTTGGCTTCTTCGGCTTCACGC 4343748 29 96.6 32 .A........................... TAGCAACCCTGATATAACCAACTGTATTGGAT 4343687 29 96.6 32 .A........................... ACGCTCAGCTATCGTTGTTCGATATTGCCCCT 4343626 29 96.6 32 .A........................... CGTATGGCGACCCAATGTGGCATTCACAGTGT 4343565 29 96.6 32 .A........................... CATTTTTCGCCCAATTGGTTATAAAAAAAAGG 4343504 29 96.6 32 .A........................... AGCAATTGCTTGAGCAGCTCATGAATCGCTTA 4343443 29 96.6 32 .A........................... CCTATCTACTAGCTCGATAGCAGCAGGCATGT 4343382 29 96.6 32 .A........................... CCCGGTCTTGGATATAGATAGTCCCGTCCTGT 4343321 29 96.6 32 .A........................... TCAGGCGTTCCAGATTGGCCTGTAATGGTGCC 4343260 29 96.6 32 .A........................... GTTCTGTATAGAGCCAGCCTGCTTGAGCAGCT 4343199 29 96.6 32 .A........................... GGAATTTATGCGAATGATGGCGCAACCAAAAT 4343138 29 96.6 32 .A........................... TATAGAGAAAAAACTTAAATGAAATCTATGAT 4343077 29 96.6 32 .A........................... ACATAGTGATGATTTGCTTTATCGCTATATAG 4343016 29 96.6 32 .A........................... CAGACCATGAACGGTAAGCGCGGAGTGTTCTA 4342955 29 96.6 32 .A........................... TTATCAAGATTCTAAAAATGCGAGGCGAAGCT 4342894 29 96.6 32 .A........................... ATATGCGGTGAAATAAAAAGCCTGCTCGCCCA 4342833 29 96.6 32 .A........................... CGTCAGTCCATAACCACCCATACCCCCAAGAG 4342772 29 96.6 32 .A........................... CTTCCGGCACCATTGGCGGCAGCACTAACTAT 4342711 29 96.6 32 .A........................... CACGTTACCTAAATCTAGGGTTAACGGTACTA 4342650 29 96.6 32 .A........................... TTAGATTAGTGTCTAGCAGAACTGAAAAATAT 4342589 29 96.6 32 .A........................... CACGTTAGGATGCGTTCATCTGACATACACAA 4342528 29 96.6 32 .A........................... TTAGAAGAACGGTTCAATGCGCCATTACGCAA 4342467 29 96.6 32 .A........................... TCTGATAGCACCCGACCTGGTGCGCGCAGAAA 4342406 29 96.6 32 .A........................... CATTGAGTCGTATATGCTGTTTCTATAACCAG 4342345 29 96.6 32 .A........................... CCAAATGGATTCGCTCTATGGCTATGGTGCAA 4342284 29 100.0 32 ............................. TCCATAGCGGTCACCTGTAATTTCTGGTCAAG 4342223 29 100.0 32 ............................. CCAATCAGCAGAGCATCCGTTAGAGTGTAAGC 4342162 29 100.0 32 ............................. CGAGATGCTTCAATATCGCATTCAAGACAGCC 4342101 29 100.0 32 ............................. TCTTTATGAAATGGGATAGCAATCCGTAGCAA 4342040 29 100.0 32 ............................. CGTCATAGAGATTTGTCCCTGAATAAACCCAG 4341979 29 100.0 32 ............................. ATCAGCAGACAGTTCAGCCAAACCCTCGACAG 4341918 29 100.0 32 ............................. TAACCTGTGACTGGATATGTACGATTTTAACG 4341857 29 100.0 32 ............................. CAGCAGTGCACATAATGATTACGTAAAGAAAA 4341796 29 100.0 32 ............................. CCAATTCAATACACTGGAAAGAACACTGATTT 4341735 29 100.0 33 ............................. GGGTTATCTAATGGCGATCACTTTGCGTTTGAC 4341673 29 100.0 32 ............................. CCCCCGGCGAACGGAGGCGCAGAAACAACGAC 4341612 29 100.0 32 ............................. TTTGATGAAATTAACTCGGGTAAGAAGCACAA 4341551 29 100.0 32 ............................. GCAGACTGATGTCTATGCCATGCGATAAAAGC 4341490 29 100.0 32 ............................. CCCCTGCTTTTCTCTTGGGTTTGCTTCTTCTC 4341429 29 100.0 32 ............................. CCGCCAAATTGGGGTTGGAGCCTGAAGAGCTC 4341368 29 100.0 32 ............................. CTTTTTTCACAGCGCGCTTGCCAAGGTCGATG 4341307 29 100.0 32 ............................. TAACCGGGCACAGAGATGGCTAAAAAACTGAT 4341246 29 100.0 33 ............................. GGGGCGACATGCTGAATAAAACCTTTTTCATGC 4341184 29 100.0 32 ............................. TTTAATATCAGGCTTGGAAATTCAACCACTGT 4341123 29 100.0 32 ............................. GTTTTTGCAGGACTCAGCAAACAATCAATAGA 4341062 29 100.0 32 ............................. TTCTCTTGGGGTGTTGCCAAACTTGTTTTACA 4341001 29 100.0 32 ............................. GGTAGGGTTATGACCAGCAGCATCCAACTCGT 4340940 29 100.0 33 ............................. CTTGCATCTTTGGCAATGGGCCACCGCGCATAC 4340878 29 100.0 32 ............................. TCCCGTATTAATCGAAACGGGCGGCGTGTTGT 4340817 29 100.0 32 ............................. CTCTGGCGCGTTTCAACCCAGAATGATATCGG 4340756 29 100.0 32 ............................. GCGATTGCTTGGTGCTTATCAAAACCGCTGAC 4340695 29 100.0 32 ............................. ACAAACCCTTAATCAATATGGTGGCCTTGTAC 4340634 29 100.0 32 ............................. GAATACAGCGCTTTGTGATTGATGCCAAAGAG 4340573 29 100.0 34 ............................. CACTGCAAGATGAGGCGCGAAGCTGGCGCCGGGC 4340510 29 100.0 32 ............................. CCGGGTTTGAAAACCCATTTCTTTTCACTATG 4340449 29 100.0 32 ............................. CATTGGAGGAGAGCCGCCGTCCATCGCAAAAA 4340388 29 100.0 32 ............................. CATGACGAGCGCATGGGCCGACTGATGCTTAA 4340327 29 100.0 32 ............................. GATGCAGGGGGCGGCGGTAACGAATTAAAGTG 4340266 29 100.0 32 ............................. GCGCTGGGTTACTTGACCAAGGGCAGCCAGAA 4340205 29 100.0 32 ............................. CCGGGCAACCAGTTCTGAGCCAGTTCCTGATA 4340144 29 100.0 32 ............................. CCATCCAACTTGGCCTTGCAGCGCTTCCAGCG 4340083 29 100.0 32 ............................. GTCACGTTGGCCAGCGGTAACCGCGCCATTGT 4340022 29 100.0 32 ............................. CCAAGGAATTTAACACAGACTACAGCGGCCAG 4339961 29 100.0 32 ............................. GAATTTTGACGGGTTACCGTCAAGCAGCAAGT 4339900 29 100.0 32 ............................. TAAGGATTGGAATGGCCAGTCTGTCTAGTCTG 4339839 29 100.0 32 ............................. TCTTGGCTTGCACATTCACCGTGGCCAGAAGT 4339778 29 96.6 32 .A........................... CGCGTCCTTGGCCTGCTTGCGGCGATGGATTT 4339717 29 93.1 32 .A..........................T GTTTTAGTCATTTTCGCACAGATACCGCTGTG 4339656 29 96.6 32 .A........................... GCCGCGCTTTGGTGCCAGGTGTTGCGCGAAGA 4339595 29 96.6 32 .A........................... GTGAGAAGGTTCTTTGATGACCTGCTCGACTT 4339534 29 96.6 32 .A........................... TTACCGAAGAAGAGTTCAGAGCAGGGTTTTAT 4339473 29 93.1 32 .A.......A................... ACTTTTAGGAAAGCCGAGGAATGTTGGTTCCT 4339412 29 100.0 32 ............................. TCAAGCCAAGCGGGAATGAAGTTGCAACTGAC 4339351 29 93.1 0 ..........................GT. | ========== ====== ====== ====== ============================= ================================== ================== 96 29 98.2 32 GTGTTCCCCGCACCCACGGGGATAAACCG # Left flank : GGTACTGGCAGCCGGTGAAATTGAGCCGCCTCCAACTCCAAAGGATGCCCAGCCCATTGCTATACCAGAGCCGAAACCGTTGGGAGAACAAGGACACAGGAGCCAGTAACTATGAGTCTGTTGGTTGTGGTGACCGAAAATGTACCGCCTCGCCTACGTGGTCGTTTGGCCATCTGGTTACTGGAGGTGCGTGCCGGGGTTTATGTGGGTGACACCTCCCGCAAGGTGAGGGAAATGATTTGGTATCAAATCAGTGAATTGGCAGAGGAAGGCAATGTGGTGATGGCCTGGGCCACCAATACAGAGTCAGGATTTGAATTTCAAACCTTGGGTGAGAATCGTCGTATGCCGGTGGATTTGGATGGTCTGCGACTGGTCTCATTTTATCCAACTGAAAAATAACAAAATATTGCTCTTTAACAACTTGGAATAATAGTCTAAAAAGTTGGTGAATATTTTTAAGTGAAAAATTGCTTAAAAAACAATAGTATTTACCAAGA # Right flank : TATTTCTTTACTGTACAACCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCTATGTGTTCATTGGCCACACTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGGGAGCGGATAAGCGGGGCAGTGTAGCTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACACCTCCTGGTGGTGAATTGCCGGATC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //