Array 1 51-568 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWQ01000026.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4995 NODE_26_length_64253_cov_81.943949, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 112 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 173 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 234 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 295 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 356 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 417 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 478 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 539 29 93.1 0 ............TC............... | A [566] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGTG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5386-6938 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHWQ01000068.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-4995 NODE_68_length_8421_cov_86.951706, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5386 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 5447 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 5508 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 5569 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 5630 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 5691 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 5752 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 5813 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 5874 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 5935 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 5996 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 6057 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 6118 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 6179 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 6240 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 6301 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 6362 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 6423 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 6484 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 6545 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 6606 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 6667 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 6728 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 6789 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 6850 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 6911 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //