Array 1 66893-64971 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQUM010000003.1 Salmonella enterica strain S1 NODE_3_length_512029_cov_118.855983, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 66892 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 66831 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 66770 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 66709 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 66647 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 66586 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 66525 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 66464 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 66403 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 66342 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 66281 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 66220 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 66159 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 66098 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 66037 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 65976 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 65915 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 65854 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 65793 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 65732 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 65671 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 65610 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 65549 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 65488 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 65427 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 65366 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 65305 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 65244 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 65183 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 65122 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 65061 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 65000 29 89.7 0 A...........TC............... | A [64973] ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.3 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 84277-83151 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQUM010000003.1 Salmonella enterica strain S1 NODE_3_length_512029_cov_118.855983, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 84276 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 84215 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 84154 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 84093 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 84032 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 83971 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 83910 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 83849 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 83788 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 83727 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 83666 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 83605 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 83544 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 83483 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 83422 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 83361 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 83300 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 83239 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 83178 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //