Array 1 29374-31499 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXYR01000052.1 Phormidesmis priestleyi BC1401 Ga0079976_1052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================== ================== 29374 35 100.0 39 ................................... TCCTTAGCGTTTCGTGGGGGAAGTCGATCGATCCCTCTT 29448 35 100.0 43 ................................... CTCCCTCATACCAAGCTCTCGTCTCAGTTCGTGAAGGATTGAG 29526 35 100.0 37 ................................... ACTTGATTCGTCGGCACCACTAGCCTTTGGCAGATTG 29598 35 100.0 37 ................................... CGGAACTGCCCAGCCGCTTCAACGATCGAGTTGGCTC 29670 35 100.0 40 ................................... ACCACGATCGCGGTATCGGTTGCAGTCGCGGGGGTAGATG 29745 35 100.0 41 ................................... TTCATTAGTCCACCTCGATGCCGTATTGCTTGCAGAATCTG 29821 35 100.0 41 ................................... TCGTCCACTTCGTTTCCCCAATCATCGTAATACGTTGTCAT 29897 35 100.0 46 ................................... TTACCATCTTTAGTTGTAAAGTGGTTCATTTTGAAATGAAGCGATT 29978 35 100.0 36 ................................... TTAGACGGTTGCGACTTCAGGAGTCTTAGCAGCTTT 30049 35 100.0 43 ................................... GCATAGTTTTCAGCCATAATCACAGGCAAAGATTCACCAGCCG 30127 35 100.0 37 ................................... TGCTTCTGATTTCTTGCTTGATGTCTTCAATGTCCAT 30199 35 100.0 37 ................................... AATAAAGACAATGCCGCCACAAATGACCCAAGAACAG 30271 35 100.0 42 ................................... TTTTGCCATTCGTTGCCGAGCACTTGGGGTGTCCTTCGTTGA 30348 35 100.0 39 ................................... AACGGCAGCTTGGGAATCGATCGGTAGGTTGCATCCGCT 30422 35 100.0 36 ................................... TCTCTCATAATTTGAAGCCATCGATCGTAGGCTTCG 30493 35 100.0 37 ................................... ATCCAGTCCCGAATCTGTGAGAGCGAGGCGTTGTCTT 30565 35 100.0 42 ................................... AAGTATCTCAGTGCTTTAATTAACGTATTTACATCACCAATT 30642 35 100.0 38 ................................... ACAATCTTGACGCTACTAGAGCGGTGCCGTCCGATCGT 30715 35 100.0 39 ................................... ATTCAATCCTGTAAGAATTTGGCAATCGTCGTCGTTGCC 30789 35 100.0 39 ................................... GGGTTCACTGACAAGGCGATTGATTTGGCTCTAGGAGGT 30863 35 100.0 38 ................................... AATACTGCCTTAAGCTGTGCAGAGACACTATCCTCTGA 30936 35 100.0 39 ................................... ATAAACTCTAGAGAAGCCGATCGCCTGTAAGCCTCAACA 31010 35 100.0 41 ................................... TCAATTAACTCATCTTGCGTCGCGAATGCGGGCGTGATCGG 31086 35 100.0 44 ................................... TTTCGTCGTCCGTCAGCCAACCGATGCTCACAAGGTATTCGATG 31165 35 100.0 36 ................................... TCGTACTCCGCGATCGGGTTAAACGCTGGCTCTTTT 31236 35 100.0 42 ................................... ATCGCGCTATCCCATGCTGAGATGAGTTTGTTTGGCTCATTT 31313 35 100.0 41 ................................... TCAATAGCCTCTACTGCTTTGACTTCCTCCATAGTGCGGAG 31389 35 100.0 41 ................................... CCTGGTTCCCCGATCGCCTCCAGTTGATGCCGCACTGCCAT 31465 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================== ================== 29 35 100.0 40 ATTTCATGACCTCTTCCCCGCAAGGGGACGGAAAC # Left flank : TGACATTGCGGATAGTAAGCGCCGTTTGAAACTATCTCATTTCTTGGAGGGTCAGGGGCGACGGGTGCAGGAAAGCGTGTTTGAGTGTTTCGTGTCGCTGGATAAGCTGAAGAAGCTGCATGAGCAGGTGCAGCGGCGAATCGAGCCGTCGGAGGATAGTGTTCGGTTTTACTGGATTCCGGCGGATGCGGTGCCGAGGGTGTTGACGATCGGGAGTGCGCCACCCCAACCACCGCCCAAGGTGTATATTATCTGAAAGTTACTTGACGTGTTGAAAGTGCTGAGTGGTATGGTGTGTGGATGGGTGTATCGACACACCTCGACCGATCCTTGAAAACCAAATACTGTCGTTGACCTATGTCGATGCCTGAATCCGTGGGCATCTGAGCGTAGGGAGGAAAATGTTTTTTAAGAGAAAAAGCCTTTTCTTTAGTTGAAATTTTTACCTCTGTCGATTTCTGGCTGAGGAGCTTTACCCAGTCAGGCTTTCGACGGACGCG # Right flank : CAATTTCAGCTAATGTCGAGTTGGTTGCGTCACCAAGATTACTTGTCTAAGAAGAGAGCGGATGATTGATCTGTATGAGGAAAAGGTAGGTCGGATGGAGAGGGAAAACCGTGCAACAACGAGTCAAACATCCGCTTCCTGTTGAATGTGATATCCCCTGCTACTCACCGAGTCGCCATCCGCTGCCGTCGGCGTTGTAAAGCTTCAGCGTTATAATTCCCAAAGCTTTTACACAACACCCTATGGACTGGCTCCCCCTCCTCGACCCAACCCACCTCTTCCACCTCGCCCAAACCCCGATCGCGCCTCCCAAAACTCCAGAAGTCGAACTCCTCCGCAAACAGCTTGACTTCATCACCCAAGCCAACAAAGACCTCAACGAAAGCTTCAAAACCTTCGTGGACACCATGAAATTTGTCCTGATTATTTTTGGCTTTTTGGGAGGCGCGATCGCTTTCATCTTCGGCAAAAATCTAGACGATGCCAAAAAAGTCGCCCGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCATGACCTCTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 29379-32238 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXYR01000051.1 Phormidesmis priestleyi BC1401 Ga0079976_1051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 29379 37 100.0 33 ..................................... ATCTCAGCAAACACACTGGCTAACCACAGCCCG 29449 37 100.0 34 ..................................... ATTAGGCAGACAGGTAGACAGACAGCCAGTGAAG 29520 37 100.0 35 ..................................... TACCCAACTCCCGTCCATCCCACACCATTGCGTGA 29592 37 100.0 37 ..................................... CTTGAAGTACCCTAGACGTATAGTTTTTAGCGGTCAG 29666 37 100.0 35 ..................................... AAAAAAGATATGGTACTAGAGCAGAATGGTAACAC 29738 37 100.0 35 ..................................... AATAGAGTCACGGCGTTAGCTGTTGCAGGTATCAC 29810 37 100.0 35 ..................................... ATACTTGCTTGCTAACGATGCAGTCAGCCCCGAAT 29882 37 100.0 35 ..................................... AGGAATGGCGAACTCAAAGCCACAACATCAGCCCA 29954 37 100.0 34 ..................................... AGTGAACACGATCGAGATGAGTGAATCCTCATCC 30025 37 100.0 36 ..................................... ATCAGCTATGGGACTTCCAGCAAGGATGCACTGAAA 30098 37 100.0 35 ..................................... ACAACGGTTGACGGGGTTGAGATGCACAAAACCCG 30170 37 100.0 34 ..................................... ATGGGCAGCACTTGAGGCGATACACAAAACGCCT 30241 37 100.0 36 ..................................... AAATCAGCAGCGTTGGAACGTTTCATGGCAATGCCT 30314 37 100.0 36 ..................................... AATCAAGCCTTCTTTTTTGAGCTTATCAACGATCGC 30387 37 100.0 34 ..................................... AACTGCAAACGTCACGTAGGGTTTTGACACAGAC 30458 37 100.0 39 ..................................... GTATTTCTTAGCGCTACCCCAAACCCCGCAGGTCTAATC 30534 37 97.3 33 ........A............................ TTTGAAAAGCCGATCGTCGATCTAACCCCTAAG 30604 37 100.0 34 ..................................... CACCGATCCACTCACCAACGCTCAATATTCTCTC 30675 37 100.0 36 ..................................... AATTTGAGAGATTGATTGCCCTCGATCGCGCCAATG 30748 37 100.0 36 ..................................... CAGTGTTTGTAATTGCTGCATATTTGCGGACAGGGT 30821 37 100.0 34 ..................................... AAAAACCCCGAAAAGGTTGCGATCAAAGTTAAGG 30892 37 100.0 34 ..................................... AGCCCATTCTCTCGATTCACGAGAATCCTACAAC 30963 37 100.0 34 ..................................... AGATTGCTAACACGCCCCAAGGCTTCGATCGCAA 31034 37 100.0 37 ..................................... AGTATGAGCTGTTGCAAGAAGTTGGAGGATTCTACAA 31108 37 100.0 36 ..................................... TGAGTATTGACTTCCTCCTAGCTTCGCTTTATCCGC 31181 37 100.0 36 ..................................... AGAAAATTCTTTAGCGATCGCGCACTCACTCTCCTG 31254 37 100.0 43 ..................................... CTAAGACTTAATAGAGTGCGGAAGCACAGCAGGCGGCACAGTG 31334 37 100.0 31 ..................................... AAGCACTAATCCGTAGCAACCATCGCGATAG 31402 37 100.0 35 ..................................... TAATGATCTGTCTACCGTACAGATCGGGCTTCAAG 31474 37 100.0 34 ..................................... CATGTTTGCTTGGCGATAGTACAGCCTAATTATT 31545 37 100.0 34 ..................................... AAAAAATGCTATCGACTCTTAATCCCGAACAACG 31616 37 100.0 34 ..................................... GCACACCTCCTGTGGCACTGCCTTAATGATTCGC 31687 37 100.0 34 ..................................... TGGATATGCCGCGATGATGAACAATCTCACAAGA 31758 37 100.0 40 ..................................... CGATCGATTGTGGGGACTGGGAGGCAAGGGAGGAAATCAG 31835 37 100.0 35 ..................................... AAATACTGCATCTTTCAATCTCTTCCAGTCGGGAA 31907 37 100.0 37 ..................................... AGAAGTAACGACGGGCGGCGTTAAATTTGCGTGTTGG 31981 37 100.0 38 ..................................... CTAGTCTGCCTGAGAGCGTTAATACCTTTTAAGCCACG 32056 37 100.0 35 ..................................... AAAAGCTTAAGTTGTGTGGGGCGCATCCCAATATT 32128 37 100.0 35 ..................................... CCGATCGCCCTTCTGGTGGTGGCAAGTGGGATAAG 32200 36 91.9 0 .............................C..-.G.. | C,C,C [32227,32229,32231] ========== ====== ====== ====== ===================================== =========================================== ================== 40 37 99.7 35 GCTTCAACCAACCCAAAACCCTTTCAGGGATTGAAAC # Left flank : GATATTCCTGAAGACAAGCGCCGAACTAAGATTCACAAGATTCTCAAGTCCTATGGGCAATGGATGCAGTACAGCATTTTTGAATGTGACTTGACTGAAACGCAATATGCCAAGCTACGATCTCGCTTGAGTAACCTGATCAAACCGGAGCAAGACAGCATTCGCTTTTACTTTCTATGTGCTTGTTGTAAAGGCAAAGTGGAGCGTATTGGAGGAGAAGCGCTCCGGGATGAAACGATCTTCTTTGCTTAATGCGCGAGTGGGTAGCTGTTTTTGTCAGAGTTTTTAGAAATGAGCTGGATCACCTTACTGGAGTAGGATGCAGCCTTTTTAGCAAAAGTTCCATCCGCGCAAGTTCCCAAATCCATACGGTCACTACTTTGTCAGCATAAAGCGAAGATGATGTTTTGCCAAGCCAGCTATCGAAGATGCTACAATTCTAAAGATTTGCGCAACCGAACCTTGAAAACAGTATACAGACCGTATTTCAAGCTCCCGCG # Right flank : CCATGCGACTGCAAAACTCAACCTCTGCTTCATTCGGCTGATGCTCAAGCGTTTGGCGCATGGCTAGATCTCAAATGGGTTCTATAGAGCAGCAGATGGAGTGGGAAAGAAAACGGTCGTTTTCTTTCCGTCAGTGCAGTTAATCCTGGTTAAAGCCACAATTGGGCTGTTTTCAATTCGGAGCGTTTTTGGGGCAAGCCGTCAAACCAATCGCTAGTCAACCTTTCCGTCAGTTGCAGTTAATCCTGGTTTGAGTGGATGATTGCAAGCTGGTTGCAGTCGAGTTCAGGTTTAGTTGCAATGAATCCTGGTCTGAAAATGTCTTGATTGCAGGTTTGACGATTTATGATTACAGGTCACTACAACTAAGCTTCATCAACTTGCTTTTCTTGAAGACATCAAGTATGGATGGCTGCTTTGTGGTCATGCTTGTTTAGCAGAAACCGAGGTAAACCTCTTGGAAATTCTGTGATCAACACACTTTTTATCGTGATCTTCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAACCAACCCAAAACCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 20043-17657 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXYR01000054.1 Phormidesmis priestleyi BC1401 Ga0079976_1054, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 20042 37 100.0 36 ..................................... ACAAAAGACGGGCATATACAAATAATTTAACCGCTC 19969 37 100.0 47 ..................................... ATATCAACGTTTGGTGGAGTTGTTTACGTTGGTTACACCCATCTAGA 19885 37 100.0 36 ..................................... TCGAACTTCGTATATTTCTAGCTCAAACCTGGCAAG 19812 37 100.0 38 ..................................... TGAGTGAAACTCATTTTGACACACCCGTAAATCTTCTT 19737 37 100.0 34 ..................................... TGGATAGAGGCGACGATGACCGAGGCTCTTTCTA 19666 37 100.0 35 ..................................... AACGTAAATCCGCTTCCAGTTACGGTTGTACCTGC 19594 37 100.0 33 ..................................... CAAAAGCTCCTACAGTACCCATTACTCCTACAG 19524 37 100.0 39 ..................................... AGTGTATTCATTCTTATCAAACAAATCAAGAATAAAAAC 19448 37 100.0 34 ..................................... TCAACTGTCGATCGAGGTCTGTAATTGGATCGCA 19377 37 100.0 36 ..................................... ACCCAAATTTACAATGTCGCCCGATGCACTTCCGAG 19304 37 100.0 36 ..................................... CACTTGCCTGTTCTTTGATTTTTTCAAGGAACCCGC 19231 37 100.0 37 ..................................... AAACCATTCGAGCCAAGGGGCTTGATTTACAAACCGC 19157 37 100.0 37 ..................................... GAAAAAGCGCTAGAAATGGCGCTAGAAGCTATCAAGC 19083 37 100.0 35 ..................................... ACGATCGGAAACATCACCGTTTACAACGCATCCTA 19011 37 100.0 34 ..................................... CTAACTTGCAGCCAGGATCGAACTTTGAAATTCG 18940 37 100.0 36 ..................................... AAGCCCGTTGACGATCGCCTCTGGTAGTGGCATCAA 18867 37 100.0 35 ..................................... TTCTCAGTCTCTAACTTCAGTTCCTCCTCTAAAAG 18795 37 100.0 35 ..................................... AAACGAGTCAACAGCGGACAGGTAGCCATCACCCG 18723 37 100.0 38 ..................................... AGACTTGAAGGGAGTGGATTTACTTATACATTTACCTC 18648 37 100.0 34 ..................................... CCACCCGTGAACTGTCGATCGGCAACGGATGAGG 18577 37 100.0 34 ..................................... CGATCCCCCGCGCCGCTTTTGCCTTCGGGCGTTT 18506 37 100.0 39 ..................................... CAGAGCGCGACTATGACATCTCAGAGCCGCGCCAATACA 18430 37 100.0 37 ..................................... GCAGCTTACACCACGATCGCCATTAATCACAGCACTG 18356 37 100.0 43 ..................................... AAATGAGTTGACGCAGTGGGTAAAGTCTCAAGTTAGCGGCTTC 18276 37 100.0 36 ..................................... CGGCAAATCGCGATCGCCAGTGAGCAGTTCTACGAC 18203 37 100.0 35 ..................................... CAGCGAGCCGTTCCCGCTAACGGTGGCAAGAGCAG 18131 37 100.0 34 ..................................... CAGACATACAAGCCATTTTGTGATCCGATCGTCT 18060 37 100.0 35 ..................................... TTAGAGAGGTTCTATATATCGGATCTTGAAAGGGC 17988 37 100.0 39 ..................................... TTTCTCTGGAATTCTAAAGAATCCTCAAGCGTTCCTATG 17912 37 100.0 37 ..................................... CTTTACGCTGGGTGGGGATGGTTTGTGGATGGCGGTC 17838 37 97.3 35 ................G.................... GCGTTTGCTTATCAGTTTGACGGCTCTCAGGTTTC 17766 37 100.0 36 ..................................... CCAAAAGCCCGTGCCGTTTTGAGAGCGCTCTCAGAT 17693 37 97.3 0 .............C....................... | ========== ====== ====== ====== ===================================== =============================================== ================== 33 37 99.8 36 GCTTCAACCAACCTAAAACCCTTTCAGGGATTGAAAC # Left flank : GATATCCCGGAAGACAAGCGCCGCACCAAGATTCACAAGATTCTCAAGTCTTATGGGCAGTGGATGCAGTACAGTATTTTTGAATGTGACTTGACGGAGACGCAATATGCAAAGCTGCGATCTCGTCTCAGCAAGCTGATCAAGCCAGAGCAAGACAGCATTCGGTTCTACTTTCTCTGTGCCTGTTGTCAGGGTAAGGTGGAGCGCATCGGGGGAGAAATGCTTCGAGATGAAACAATCTTTTTTGCTTGATGCGCGAGTGGGTGGCTGTTTTTGCCCAAGGTTTCAGAAATAGGTTAAATGGCTTGACTGGGCTAGGTTTCAGCCTTTTGACTAAAAACTCCTGCCGCGCAAGTCCTCAAATGTAGACTCACATTGCTTTGCAAGGATGAAATGGAGATGATGATTTGCCAAACCAACACTCAGAAATGCTACGATCCTGACGATCCGCGCAACCGAACCTTGAAAACTGCATATAGACTGTATTTCAAGTCCCCGCC # Right flank : AATTGCCTGCTGCAAGCGGGGAACAATGTCCGTTGCTACAACTAAGCCTTTCAGCAGTTGGAGACTGGTTCAGATCTGAAGCTAATCTTCTCGAATCTATCCGTCAGCGGTGACATCACCTGCATGATTACCGCGATCCGCCTTGCAAGTTGCCGCTTCTGAACAGATCAAAATAAAAACAAAATAGATAAAAGCAACACAACACAAAGGGGTGAGAACTTGAGAGAACCAAGGCAATCACCCCATGCAGCCATCATCAGCAACAGATGTTATACACGCCCCCTCGACAGAAGCACCCTGTACGCGAATTGATGCAGTGATTTGTGACCTCATCACTCACATCGATAACTACTCAGATGATGATTTTGACACTGACTGGATGCACCTAACGAACGCAGAAGTAGAAGCATTGGTGATCGCTGTGATACGGCATTTAATCGCCACAATGAACGGTAAGCTCCTGAGTGGATACCTGCTAGAGATCCGGCAGGAATCGGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAACCAACCTAAAACCCTTTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 1749-3401 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXYR01000076.1 Phormidesmis priestleyi BC1401 Ga0079976_1076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 1749 37 100.0 35 ..................................... TCGGGACATTGCACTCTAGAACCCACTGCCAAAAA 1821 37 100.0 35 ..................................... AGACATAGAGCCTCGCAATGGTTACTGCAATGATA 1893 37 100.0 34 ..................................... GGTCGGCTACAGCGCTGCGATCGCCACACTTCAA 1964 37 100.0 35 ..................................... ACTTGGTCTGATACTTGGGCAAGTTTATTTGCTGT 2036 37 100.0 41 ..................................... CTATATAATTAATTCCCGCTAGATTACAAGCTTCTGACCAA 2114 37 100.0 37 ..................................... GCACAAGCATGAACTTGAGAGCGAGCCGCCCGACTAG 2188 37 100.0 35 ..................................... CCCTGAAACCAAGTGTTATTAAACCTTGTACCATA 2260 37 100.0 37 ..................................... CCCTTAGCGATCGCGATCGCCCGCACGGCTTTCTTTT 2334 37 100.0 35 ..................................... AGTACTTCTGGAGTCGCCTCAGTGTTTAAGAGTTT 2406 37 100.0 46 ..................................... TCGTAGTCCCAGACAACCATCGCCCAGAAGTGACGAATACGCTCGG 2489 37 100.0 36 ..................................... CTAGTCGTGTCGTTGGCGTTCACTTGAAACCGATCT 2562 37 100.0 38 ..................................... CTCATCTTCTCGCAGACGTGAACTGGAAGACGGATAAC 2637 37 100.0 35 ..................................... CCAGAACGATCGCTCTTTTCTTAGGATTTACTAAG 2709 37 100.0 35 ..................................... GCTCATCCTTATCCTGTAGTCTTGTCCGATCGCAA 2781 37 100.0 35 ..................................... AATCAGGGATATGGTTAGTTCGCTGCTGGTCGCAA 2853 37 100.0 33 ..................................... TTGGTTGCCCGAACCATCATGATGCAGCCTAAT 2923 37 100.0 37 ..................................... CTGATAGAAACCTTGACCCGTGGAGTAGAGTCTCTAG 2997 37 100.0 35 ..................................... TTCAATTGATCTTCGCTTGAAGTACCCATCACAAA 3069 37 100.0 39 ..................................... ATCGTCACCCATCGCTGAACCTCGCTAGACAGTGACGTG 3145 37 100.0 35 ..................................... CGCGGTTCTGAGTTCTGAGTTATCCTCTCGAATCC 3217 37 100.0 37 ..................................... ATTCGCGGGATGTGGAAAGTGTCACCCTTCTTAACTT 3291 37 91.9 37 C....G...........A................... GATCGCACTAATTGCCGAAACAATTTAGACGCTGGAA 3365 37 86.5 0 C...CG.......C..................A.... | ========== ====== ====== ====== ===================================== ============================================== ================== 23 37 99.1 36 GTTGTACCGATCCTTTGCGATCGGATTAGTTGGAAAC # Left flank : TGGTTTCATGGAGCATATCGAGAGACGATTAGAGGGGTGCAGCGAGAGGGATCGCTTTATCAGTCGCAGTCGGCGGCGATGACGGGAAAGGTGGGGCAGATTGGGCGATTGTGGCATCGGATGTATCCACAGGTGAAGCTGGTGATGACGAGGAAAGACCCGGAGGGCAAGCCGAAACCGAGGATCACGCCTCAGTTTTTGGAGTGGTTGACGATTTTCCCGGATGAGTCACGGGAGTGTGAGGAGTTTTTGGAGTTTTTGCAAGGGCAACCTTATGGGTTTCGGCGGTTTTGGGGTGAGGAGTAGTGAGGTTGCGCGAAGGTTGACTGTTGGCTGAAACCCTCATTCTTTCGTAATGATCCGCGCTCGGCTTGGGGTAAAGGTTTTGAAGACTTGAGGTCAAACTTTTGTCAACAAAGGGGAATTTATTGACTCACAAAAAACGATCCGCGAAAATGGGGGCTAGAATACTGACACAGATGGACTTCTGGAAGTCCGCT # Right flank : CGATCGCAGCTTCACATGGGTCTTTCCACGCCGCGATCGCTCTTTTTTTAAGTCAGTTTTGATGACTAGCGATCGTTCCATACCGTGAAGATGCTGGAGTGAAAAGCGCTATCGTAAGAGTAGTCAACAGGTTAAACCCGCCGTGACAGACTCTGATACACGCCAAAAAGTTTTGCACGAAGTGGCTCAGCTTCCGTCCGATCAACTTATGCTAGTCGCTAACTTTCTAGAATTCCTACACTTCCAACGCTCAGGAATTCCTACAACTCAAACAGCGCCTTCGATCGACGATCAGCCCACGCTGACAGGTTCTACCGTTGCAGACCTCTTGCCGTTTGCTGGAACCTGGCAAGGCGACGATTTTGAAGAGTGCCTTCAATCCGTTTACGATTCCCGATCGCCTGCTGAATTCTGACCATGTACCTGCTTGACACCAATCATTGCAGCCGCATCATCTCTGGCGATGCAGCCCTTCTCCAGATGCTTCAACATCATTTAGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTACCGATCCTTTGCGATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //