Array 1 16834-17265 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832087.1 Streptococcus sp. HMSC066F01 Scaffold52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16834 36 100.0 30 .................................... CATATCTTCCATGGCTAAAGACCAGTCCGT 16900 36 100.0 30 .................................... GTTTAAAATCAACGTAACAAATGATAATAA 16966 36 100.0 30 .................................... GTTCTTTTATACTACGGTTATCAAACCATT 17032 36 100.0 30 .................................... CAAAGAAATAGTCAATTATTTCTACATCTT 17098 36 100.0 30 .................................... GATAAAGAGTCGTTCAAAGTGGAGCCTGAG 17164 36 100.0 30 .................................... CATTGGTGGGGAATTTTCCCTGCTCGTCAG 17230 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAACTTAATGACAAGCCAGAAGTCAAATCCATGATTGAAAAACTGGTAGCTACGATTACAGAATTGTTAGCATTTGAGTGCTTAGAAAATGAACTAGACCTAGAGTACGATGAAATCACCATTCTAGAGTTGATCGATGCCCTAGGAGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTGTCCAAGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGACCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAAGGTTTTATTTATCGAACCTCGAAAAGTCTATGATTTTCCTCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGGGTAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : GTTTTCCTCGTCGCTCTCAAATGCTGAGTGGTTTTAGAGCTGTGTTGTTTCGAATGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 58-555 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832114.1 Streptococcus sp. HMSC066F01 Scaffold351, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 58 36 100.0 30 .................................... CCCTATTTTATCGCTTTTATCGTTCGTGTG 124 36 100.0 30 .................................... CCGTCCTAACGACGATTATTACAGCGTGTA 190 36 100.0 30 .................................... GATAAAGAGTCGTTCAAAGTGGAGCCTGAG 256 36 100.0 30 .................................... CACGCATCAATCACGCGACAGTACCATATC 322 36 100.0 30 .................................... GTTCTTTTATACTACGGTTATCAAACCATT 388 36 100.0 30 .................................... CAAAGAAATAGTCAATTATTTCTACATCTT 454 36 100.0 30 .................................... GAAACCACTAGGCGGAGTACCACAATAAGG 520 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : CTGTGTTGTTTCGAATGGTTCCAAAACCCGATACCTCGCCCACCTATCACAAAATTAG # Right flank : CCAAAAAAAGATATATATAGCGTGGGCGCAGTTTTAGAGCTGTGTTGTTTCGAATGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 134104-132959 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV832115.1 Streptococcus sp. HMSC066F01 Scaffold370, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================================== ================== 134103 36 100.0 30 .................................... GGGCAAGACCTCGGAAATGGAACATATTCT 134037 36 100.0 30 .................................... GAAACCACTAGGCGGAGTACCACAATAAGG 133971 36 100.0 30 .................................... TGTTGGGAAAACCTCACTCCTTCAAAAGCT 133905 36 100.0 30 .................................... GCGTATGAGTAATACAAAAATCAAGCTTGT 133839 36 75.0 83 ...........................NNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 133720 36 77.8 30 NNNNNNNN............................ AGAACTCGACCCGAGCGAGTATGTGTATAT 133654 36 100.0 30 .................................... CACGCATCAATCACGCGACAGTACCATATC 133588 36 100.0 30 .................................... GAAACCACTAGGCGGAGTACCACAATAAGG 133522 36 100.0 30 .................................... AAAAGAAATAGTCAATTATTTCTACATCTT 133456 36 100.0 30 .................................... GAGATTGGGCTGGATAGTTCGGTACTTCTT 133390 36 100.0 30 .................................... TTTTTGATACTTTCGCTATTACCAATGCTT 133324 36 100.0 30 .................................... AGTTCAGTTACCTTACCTAAAAGAGTATTA 133258 36 100.0 30 .................................... CACGCATCAATCACGCGACAGTACCATATC 133192 36 100.0 30 .................................... GATAAAGAGTCGTTCAAAGTGGAGCCTGAG 133126 36 100.0 30 .................................... AGGGTGTAAGCAAGTTCCCTCTCCCACCAG 133060 36 100.0 30 .................................... GGAGATTCAAAGTCAGTCCCTTGCGTACTT 132994 36 91.7 0 .................................TCT | ========== ====== ====== ====== ==================================== =================================================================================== ================== 17 36 96.7 33 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : GCTGTGTTGTTTCGAATGGTTCCAAAACAAGCAATCTTCACCAATCACCTCATTAAA # Right flank : ACATAAAAAGCTACTCATTTTTTGAGTAGCTTTTTAACTATTCCCCCCTACACATAGCTCATTCCCTTATAGCAAAGGAAAACGGCTAGAGCGATAAAAAGTACAGTTGCTCCGATTCGCTGGCTAGTACTGTACATCCTTCTCTCCCATTTGACTGGGAAGATGACTGCTAGAAAGGCACCGCCTACTGCACCTCCGATATGCCCAGCTAGGCTGATTCCTGGAATCAGAACACTTCCAATGATATTTATCACGAAAAGTGTCAGATAGGATTGCCCCAACTGCTGAATATAGGGGTTACGAGTTGCGTAACGCAGGACGATAATCGCAGCAAATAGTCCGTAAAGAGAAGTGGATGCTCCTGCTGCTAGGACTTTCGGTGTGAAGGCAAACACAAAGAGATTGCCCATCATTCCTGATAAGAGATAGAGAAAGAAGAACTGCTTGGAACCGAAAATCTCCTCCACCTGTCGTCCAAGAAAGTAGAGCGAAATCATATT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //