Array 1 10290-10765 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGJL01000056.1 Methanotorris formicicus Mc-S-70 ctg132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 10290 35 100.0 40 ................................... AAATTACAGTCGCAAACTTATTTGATGATTTTTGCAGTGA 10365 35 100.0 43 ................................... TTGCCCAATAAAGATTCTTTTAATCCGTGCGGTATTACAAAGA 10443 35 100.0 36 ................................... TATAATCCCGTATTTTTCAGAAAATCTGCTGTAAGT 10514 35 100.0 38 ................................... CTTTTCGAAGGCATTTAACAGATTCATGACATATTGGT 10587 35 100.0 37 ................................... CGCAATGAGAGAAGAGTTGGCAGAAGAGATGGGTTGT 10659 35 100.0 37 ................................... CGCAATGAGAGAAGAGTTGGCAGAAGAGATGGGTTGT 10731 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 7 35 100.0 39 TTCCATCCTTGTTTTAATGGACTAAGATTTCAAAC # Left flank : AAATCAACTTTAATAAATTTAATTTGTGTGTATTTATAAAATCCCATGTTTTAATGTATGGTTAATTCAAACTTAAAAGTTCATTAATGTGGTGTAGTATGGAAGTGTGAGATAAAAAAGAGATTATTCTCACTCTAAAAAATTTATTGGTTAAAAAATCTTAGATAATAAGATTACACATAAGACCCCTCCTGCAGATGCTAAAATAATTAGTGCTAAAATTTCCACTATCCCAATCTTATGGTTTTGGGAGTTGTTAGTTTCATTTGCAGTGTTTTGATTGTGAGTTAAGATTGGTGTTACGGTTTAACTCCTTGTTTATTTTCTTCAGTACTGTCTCTTACAATATTGGTTTTGGGTGTTTTTGCAGTGGGAGTTTTTACTATTGCTGGTTTAACCACACAAGCCTTTCCAACCGCTCCAAAAACCACATTAAAAACCAACAAAAACACAACAACAGAGATAATAATTCTCAATCTCATAAGTCATCCTCTAATAGT # Right flank : CGCAATGAGAGAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCCATCCTTGTTTTAATGGACTAAGATTTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 495-240 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGJL01000051.1 Methanotorris formicicus Mc-S-70 ctg141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 494 37 100.0 34 ..................................... GAAGTATAAGACCACGACCTAACTACTATATACT 423 37 100.0 38 ..................................... CCAAGAAAAGGTTGGGGAAATAGCTATGGATATTTAGT 348 37 100.0 35 ..................................... AATTGTTTTATGAATATATCTTTTTTATCTTTAAT 276 36 94.6 0 .........T-.......................... | A [270] ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 98.7 36 GTTTGAATCGGTAGTCCATTAAAACAAGGATGGAAAC # Left flank : ATCAGAAGTAAGTAAAGTAAGTGTTGATGACGTTATTGCAAAATTGTTGAAATATGGTTGTTAATTATTTAAAATCTTTAAAAAGGTTTCATTCAAAGGAATGCACTGTTTTTCGCTTAACAGTGACTCTTATTTTTTTAATATCTATATTAATTTTTTTAATTAACTTTTCTTGCTTTTATAAAGGGGTTTGTGGATTTTAGTACTAGAAAATTCATGAAAAGTATTACTGATTTTTTTAATGGAAATTTGTTATTTTTTAGATATTTTTGTTGTTTGTTTTTATTTAGCATATTTTAAGTTTAGATTGGTTTTAGATAATATAAAATAAGGTCTAATTATCAAGATTTATTAGCGTGGTTGTGCAGTTGATTTAAAAAGAAATTGCACAATCTTTCTTACTCTTTTAAAGGTTTCAATAATTAAGCAGTAAGAAAAATGGGGCTGAAAAAGAAAAGTATATATATGAGTTTTCACAATAAAAAAGAAATAAGTTAAGG # Right flank : CTTGATAAAAAAAGAACAGATGAGTTTTATTGAGGATATAAAATACTTTTAACTGACAGTGTGATTACGAGAATCCTTTCTTTATTAGCTCTTTACTGCACTCTTTAATCACTCCATAGAATGATAATCCATATTTGTGGCTTAAATATTCTATACAGTTTGATACCATTGCTATAAACCTAACAAACCCAATATTGCTCTTTTCAGACGTTAGGTAATTTCCCTCAACATCTAAAATCG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGGTAGTCCATTAAAACAAGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.40,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 10194-11588 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGJL01000051.1 Methanotorris formicicus Mc-S-70 ctg141, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 10194 30 100.0 38 .............................. GAAATAACAGAAGGACAACAGGGATTTGAAAACATTGA 10262 30 100.0 39 .............................. TCAAGGAAATGTTTTAGCAATAAATTCAACAACTGTAAA 10331 30 100.0 38 .............................. GAGATAAAAGAATGGTTGGATAAATTTAAAATTGAGAG 10399 30 100.0 38 .............................. AAAAAAGCCATAAAGCAAGCAATGCAAAAATAAAACCT 10467 30 100.0 41 .............................. ATCTGACATACACATCACATAACATTTTGTTTTTTTTGACA 10538 30 100.0 43 .............................. ATAAACTTTGAGAAGTATAAGTATATTTGGGTTAAGGTTGATG 10611 30 100.0 39 .............................. ATCTCTTTCTCTTCGTCTATCTCATAACTATCAAATACT 10680 30 100.0 42 .............................. TATAATCTTTTTTAATTAATGTTCCATCTTCAAGGTAGAAAT 10752 30 100.0 36 .............................. GAAATAACAGAAGGACAACAGGGATTTGAAAACATT 10818 30 100.0 36 .............................. TACGAATTTCCCCACCCTTTATGAATTAAAATGCAG 10884 30 100.0 37 .............................. GATTAATATGAAGTATTGAGAAGTCACTAAACAGTAA 10951 30 100.0 37 .............................. ATTTTTTATAGCAAATCCGTTATAATCCCTTTCCAAA 11018 30 100.0 37 .............................. TCGTACTCTCTCAATAATTTTATAAATTCTCCAACAC 11085 30 100.0 36 .............................. CAAGTTTTTTTATAAGTTAATTTTATCAGGGCAAAA 11151 30 100.0 37 .............................. ACTCTTTTAAAATCACCATATCCATTTAATAAATTTA 11218 30 100.0 36 .............................. TTTCTAAGTGGGATAGGAACTCTATAATGTGTTAAT 11284 30 100.0 39 .............................. CTTAAAAACAGGTTTTTTAATCTATTAAAAAGCATACTT 11353 30 100.0 38 .............................. ATCAAATTCAACAAGATACTTATTATCCCCAATATATT 11421 30 100.0 36 .............................. CTCTATCTATCCCATATCCTTGAATTAATTCAAATA 11487 30 100.0 42 .............................. TAAATTCATCAGTTGCATCTATGAATGCTTTTGCATCAAATA 11559 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 21 30 100.0 38 GTTAAAATCAGACCCTAGGGGGATGGAAAC # Left flank : GCAGAGAAGTATAATGCAAACGACTACATAAAACAAAGATTGACATTGATTAAAGAAGGTATTGATTCATTATTTGAAAATGATAAGAAAAAGCAGGTTAAGATAAGTGATTTCTTTAAATAATTTAACTTTATACATCTCTTGCTAAAAGTTTTTATTTTTTTATTTAATTTATTTTTAAAGGGTTATTTTTTGATTTTGTAGATTTTTATCGAATTTCGAAGGTCAGTCTATTTTAAAGAATTTGAGTATTTAGTTTTATGAATTTATTGAGATTTTTGGATTTAGGGAATTGGTAATAATTATTTTAGATTTTCCCCAATAGGTAAAAAATATTTTAAAATTTAAAAAGATTTTAGATGTTTAATTCGAATTTAAACGATTTTTAGAGAAGTGCGGAGGTATATAAATGAACGCTGTTAATACCCCTTCGAAGATCAAGGTCTCGAAAAGGAGTAAGTAGAAAAGTTTATATAGGAAAAAGAGCAAAATTTTATCCT # Right flank : CATTCTTTTATTAAAACTAAAAGAACAGGAAAGAAGAGTTATTTTTTTCTGTATGTTTCAGGTATATTTTCAAAATTGTAGATATGGATGGTTTCGGTTCAATGGGTTATTTTTTCTGTATGTTTCAGGTGTATCAACTCCCAACAACCTAATCTTCCATAATTCTCCATTAACGTTCACATAAACAGTGTCTCCATCCACAACTTTAACGACCTTTCCATAATAATGTTCATGAGTATTTACAAAATTAGAGGTATCTGAATTACTGTCATGAAAATTATTATTATGGAGTTCAATACATCCTCCTAAAAAAACAAAAATAAGCAACATTAATATTATTGAATATATTTTAGGTTTCATACTTCCTCCAAATGGTATTTAGTTTAATCTTTTTAAAGCAATTATTTGGATTGTTATTAAAGTTAGAATTATTGCCCCTAATGGAATTGGTGCTTTTATTGTATTTCCACCACCGTTATTGTAGTTTCCATTAGATTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCCTAGGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 2935-1630 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGJL01000043.1 Methanotorris formicicus Mc-S-70 ctg146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 2934 30 100.0 38 .............................. TTCATTCACAGCTGAAAATCCTGGCTGTTTTAAAACAT 2866 30 100.0 38 .............................. ACATTATTAATAACACAGCAACAAATCTCTCAAAATGA 2798 30 100.0 40 .............................. CTAAATATTCTAAATTAAATGATGACTTTGCTTCTTCACC 2728 30 100.0 38 .............................. CTTAGCAATTATAATTTACATTGTTTTTTATTTTGCAT 2660 30 100.0 38 .............................. TTAACTTGTGTTTCATAAACCCTTCCGGTCTTACCATA 2592 30 100.0 38 .............................. ACAAAAAGACTTGCAAACTCTCCCCACTCTCTTGGAGA 2524 30 100.0 38 .............................. CTGACAGTTTCTTCTGTTATTGAAGGGTCATCTAAATT 2456 30 100.0 36 .............................. TTTAACCTAACTTTATTTACATACTCAATTTCTGGA 2390 30 100.0 38 .............................. ACTATTTTTGCATTAAAGTTGCTTAGTTGGTTTATTTG 2322 30 100.0 43 .............................. ATATAATCAAAAAATAAAATGTAAAAATATTATATTCTTGCTT 2249 30 100.0 38 .............................. TTCGTCATCTATTATAAATGTTACTTTATCTTCGAAAC 2181 30 100.0 37 .............................. GAGTTTTTTCTAAATTTAGTCCCTTCCGTAGTTATGC 2114 30 100.0 37 .............................. CTTCTCATGTCAATAAATCCTTTTACGCCGTCTCTTT 2047 30 100.0 37 .............................. ATGAATTTTTTATTTGGAAGTTTTCCGCCGTCTGGTA 1980 30 100.0 37 .............................. CTTTGTTGATTTCTCTGTATATGTTCCAATCAGTTGC 1913 30 100.0 37 .............................. TCTTTATCCCCATTGGGTCTGATTTTAAAAAAAAGAT 1846 30 100.0 37 .............................. CCTTTATTTGTCATAGATTTCTTTGGCAATCTCTTTG 1779 30 100.0 36 .............................. ACTTCTGTATTCTTGTAAAACTTGCACCTCGATTTC 1713 30 96.7 24 .............................T ACAATCTCAGTATTGACAAACACT Deletion [1660] 1659 30 73.3 0 ..............A.G.T.....AATTT. | ========== ====== ====== ====== ============================== =========================================== ================== 20 30 98.5 37 GTTAAAATCAGACCCTAGGGGGATGGAAAC # Left flank : ACATACAACTACGACAAGCCAGATGTTATAGCAGAGGTCAGCAAAAACATTGGAGAACCAATGAGAGGAATAGATGTTTCAAAATTAAGTGAAGAGGAGATGTTGCAGTACAGGGGAGATTAAATTGTTTATTATTTTTTCTCGCTAAAAGTTTTTATTTTTTTATTTAATTTATTTTTAAAGGGTTATTTTTTGATTTTGTAGATTTTTATCGAATTTCGAAGGTCAGTCTATTTTAAAGAATTTGAGTATTTAGTTTTATGAATTTATTGAGATTTTTGGATTTAGGGAATTGGTAATAATTATTTTAGATTTTCCCCAATAGGTAAAAAATATTTTAAAATTTAAAAAGATTTTAAAAAATTATTTCGAATTTAAACGATTTTTAGAGAAGTGCGGAGGTATATAAATGAACGCTGTTAATACCCCTTCGAAGATCAAGGTCTCGAAAAGGAGCAAGTAGAAAAGTTTATATAGGAAAAAGAGCAAAATTTTATCCT # Right flank : AAAATTAATTTTTTACATAAAAATATTAATTAATTCAAATATATAAATAAATACTAAAATAAAAAATAAAATTAAGAAAAAATCATTTTAATTAATTCTTAATGATTTATTTGTCTTTTCAATTGATTTAAAGTTATCATCTTCCATTTGGAGCATTGCTCTTATACAGTCAATATTTTCTGGAATAACATCACTTTCTTGATGAACTGCTTGCATTAAGAAGACCTCATTATCAACAACATTAACTATTTTTATGGGTGTTATCATTCGAATATTTATAATTATCATGTGCGAAATAATTTCGGGATATCACATATAGGTTTTATTTTTTTAATTCTTTTAATGCCTCCTCAACCTCAAGACCCTCATGGACTACTTTTGATACTGCCCTTGTCATGCCTCTAACGTTTTCATGCTGGAATATGTTTCTTCCAATTGCAACTCCAACTGCCCCAGCGTCAATAGCATCTTTAACCATCCTTAAGAACTCCACATCTGTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCCTAGGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [95.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 1057-231 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGJL01000112.1 Methanotorris formicicus Mc-S-70 ctg76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 1056 30 100.0 36 .............................. TAAATCTGAAAAACATCTTATAAAAGCTGCAAGAAA 990 30 100.0 33 .............................. TGCTTAAGAATTCAATTGGAGTTTTGTAAATGA 927 30 100.0 33 .............................. TGGCATTTATCTTGTATTCCTTGCTGTATTTTA 864 30 100.0 36 .............................. ACAGGTAGTGGTAAAACAGTAGTAGCATTAGCAATA 798 30 100.0 38 .............................. GAGTGCTCAATATGAGCATTTGATGTGTTTGTACTTCC 730 30 100.0 37 .............................. CTCTAAGTTGGTAATATCCATCTTCTGGCCAGTCTTC 663 30 100.0 36 .............................. TCCATCGTAGGTATAATTTTCATAACTTGTTATATA 597 30 100.0 36 .............................. TATCAATTCTGAATAAGTTTCAAACATATACCACTC 531 30 100.0 44 .............................. TGTTCTTCTTGGGTGGAATACGTGTCTATGCGTTACTGTTCTAT 457 30 100.0 36 .............................. GTTGTTCCAGTTGTCTGTCTCTTATGTAATAAATAA 391 30 100.0 36 .............................. CTGATGCCAATTTAAATCACCTCCTTTTTCCATAAT 325 30 96.7 37 .............................T TTATCTCTGCTGACTAATACATACCCATCCAACCTCC 258 28 86.7 0 ................-..A....A-.... | ========== ====== ====== ====== ============================== ============================================ ================== 13 30 98.7 37 GTTAAAATCAGACCCTAGGGGGATGGAAAC # Left flank : TTTTCGTTGTTTTATCGTATTTATGGAATATATCT # Right flank : CACTAAAACATAAAATGGAAAGTTATTTTTTACAATACAATATAGAAATATTTAAATTTACAATTAATATCAAAAATAAAAACTGACAGTGTGATTACGAGAATCCTTTCTTTATTAGCTCTTTACTGCACTCTTTAATCACTTCATAGAATGATAATTCCATATTTGTGGCTTAAATATTCTATACAGTTTGATACCATTGCTATAAACCTAACAAACCCAATATTGCTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCCTAGGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //