Array 1 304799-306617 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTLX01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain V22 isolate V22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================== ================== 304799 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 304860 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 304921 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 304982 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 305043 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 305104 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 305165 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 305226 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 305287 29 100.0 53 ............................. CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 305369 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 305430 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 305491 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 305552 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 305613 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 305674 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 305735 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 305796 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 305857 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 305918 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 305979 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 306040 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 306102 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 306163 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 306224 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 306285 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 306346 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 306407 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 306468 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 306529 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 306590 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ===================================================== ================== 30 29 98.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATTTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 322751-323452 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTLX01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain V22 isolate V22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 322751 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 322812 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 322873 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 322934 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 322996 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 323057 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 323118 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 323179 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 323240 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 323301 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 323362 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 323423 29 96.6 0 A............................ | A [323449] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //