Array 1 11723-9371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGMY010000361.1 Streptomyces sp. SID8111 contig-1000013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================== ================== 11722 29 100.0 32 ............................. TTGGTGCGGCGCAGCATCCTCGACGCCGACAT 11661 29 100.0 32 ............................. CCGCGTTACGGGGCCCCGTCCCGTTGTGGCCA 11600 29 100.0 32 ............................. GGGATCTACAAGCGCGGCCGCGACGAGCTGAT 11539 29 100.0 32 ............................. CCCAGTTCCCGCCCGTGAAATACACACATTCC 11478 29 100.0 32 ............................. GGCCACACCGAACCGCAGGTCAGCCTGCTGAA 11417 29 100.0 32 ............................. GCGTAGTAGACGGTGCCTGCGGTGACGGGGTA 11356 29 100.0 32 ............................. CAGATAGTGCAGTTAACAGACCAGGCGACACA 11295 29 100.0 32 ............................. TACGACCCGGCGACCGGCACGATCACCGCGGA 11234 29 100.0 32 ............................. AGGAAGGACACCCCGCCATCATGTCGCAGACG 11173 29 100.0 32 ............................. CTGCTCAAGCAGTCCCCGGCCCTGGCCGAGGC 11112 29 100.0 32 ............................. AGCTCCGGGTTGAGCTGCGCACTGCGCACGAG 11051 29 100.0 32 ............................. GCGGCGGTCTCGGCCAGGCCGGCGAGGAGGGC 10990 29 100.0 32 ............................. AGACAGACCCCCGCGACGGCTGGAACCGTCCG 10929 29 100.0 33 ............................. GTTGAGCTGCTTCAGCTTGAGCAGAGCGTCAAT 10867 29 100.0 32 ............................. GGGCCTGAGGGTCCGCGTAGCTCGCGCATGCA 10806 29 100.0 32 ............................. GGCTCCAGGCGGTTGTCCGTCTTGTAGGTCCG 10745 29 100.0 32 ............................. CGAGACCTACCAGCAGCAGCACGACCTGCTGA 10684 29 96.6 32 ............................A GGCCCGGGATCGTCACGTCCCAGACCTTGAAG 10623 29 100.0 32 ............................. CCCACCTGGCGCAGGTTGCCGAGGCCGTGGGA 10562 29 100.0 32 ............................. CGAGGGCGCCCAGTACACCGACTTCCTCGACG 10501 29 100.0 32 ............................. TATGTGGCCGGCGGGCACACGCTGGCCATGAC 10440 29 100.0 32 ............................. AGACCACGTCCACGTCGACCGCGTACGCCGAC 10379 29 100.0 32 ............................. AGACCACGTCCACGTCGACCGCGTACGCCGAC 10318 29 100.0 32 ............................. GCGCAGGGCCGCTTCGTGGCCGCGGGCCGGCA 10257 29 100.0 32 ............................. GACACCCTCCTCCGCCTCGCCCAGGACTGCCC 10196 29 100.0 32 ............................. ATCAAGACGGCCTGGGACAAGGTCCGTGACGT 10135 29 100.0 32 ............................. TCGCTCGGGGCGCCGGGGTGCACGACGACGTG 10074 29 100.0 32 ............................. GGCGACGAAGAAGCTGGAGGACCTGCGGAAGG 10013 29 100.0 32 ............................. CGACACGCACACGTGAGGTTGCCCGGTGGCCG 9952 29 100.0 32 ............................. CAGGTACACGAGGCCATCCGCGAGGCGCACTT 9891 29 100.0 32 ............................. TACCTCCGCGCCGCCCCGCCCTTGGACTCCGC 9830 29 100.0 32 ............................. CAGTACCGCTCCGACTTCGAGAACAGGAACAG 9769 29 100.0 32 ............................. GCCCTGGTCCGCCTGCACATCACCCGCCTGCG 9708 29 100.0 32 ............................. TCCTTCTCGGGCTGAGACGACGGTTGTGGGCA 9647 29 100.0 32 ............................. CGACATGACAGCCGTACCCGTTGACCCGTTCG 9586 28 96.6 32 .....-....................... GGCCCGGCCTCCATGTGCGAGGGGAGGGCGTC 9526 29 100.0 98 ............................. GATGACCCGTAGCCACGGGAAGGACCCGTGGCTGCCCCTCTGCTCCCTGCATGCACGAATGGCCCCGACTGCGTGGAAATAGCCGAAGCAGGGACGAG 9399 29 93.1 0 ........................CA... | ========== ====== ====== ====== ============================= ================================================================================================== ================== 38 29 99.6 34 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CGGCGTCAACTACGACGGCCCCGACGGCTACGAAAGCGTGGACTGGTGACCGTCATCGTCCTCACCAACTGCCCGGCAGGCCTACGGGGCTTCCTGACCCGCTGGCTCCTGGAGATCTCCGCGGGCGTCTTCGTCGGCAACCCGTCGGCCCGGATCCGCGACGTGCTCTGGGAGGAGGTCCAGCAGTACGCGGGCCAGGGCCGGGCCCTGCTCGCCCACACCGCGAACAACGAACAGGGCTTCACCTTCCGAACCCACGACCACGCCTGGCACCCGACGGACCACGAGGGCGTCACCCTCATCCGTCGTCCGACGCCGAACGCACCGTCCGCTGCCCGAACGCCGGAGGGCTCCCCGCCCCCGGGCTGGAGCCGAGCGTCGAAGCGCCGTCGGTTCGGGAGGGGGTGAGGAGCGCGATGACCGCCGTGCCCTATTTGTCGAATTCGGTGAAAGTCATGAGAAACGACCTCCGCGAGTAATAAACGCGCAGGTCGCGGAGT # Right flank : GGGCCCGTCGCGGGCTTCGGACCTGACCAGGCGATTGGGGACTCCGCCCCCAATCGTCTCCCTCACCCGGCCCCGAACTCGTACTGCACCTCGTAAAGGTGACCCGCCTTGACCATGACGGTGGCTTCCACAGGGCGTTCGTCGTCGCTGTAGACCACGCGCAAGGTGCGGAGAACGGGGAGGTCGCTGGGCAGGTTGAGGGCGCGGTGTTGTTCCTGGGTGGGGACCCTGGCAGAAACCCGGTCCACGCTGAGGCGCGGTGGATGGCCGAGTTCGCTGAGGAGAGTCGGGGTGCCGCCTCTGATCTTCCGCTTGGCCATGAGCGGGGTGTCTCGGGCGATGAACAGGGGGTAGTACGACTTGACCAGCTCGACGGGCTCACTGTCGATGTAAAGGATCTGGTGGCGCAGAACGGCTGTCTCGGTGTCGTCGAGACCGAGTGCGGCTGTGACATCTGCCGGAGGTCGGGTCTCGGTCACGTCGAGGAGCGTGCTGTGCGC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21509-23302 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGMY010000361.1 Streptomyces sp. SID8111 contig-1000013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 21509 29 100.0 32 ............................. GCCCTGGCGGCCTCGCCCGCGACCTTGCCGTT 21570 29 100.0 32 ............................. GACGGGCTGTCCGCCCGCCACGCCGGTCCAGA 21631 29 100.0 32 ............................. TGGACGCCGTACTCGCTGATCGTCTCGACCAG 21692 29 100.0 32 ............................. GCAGAGTTCTTCGAGTTCAAGCCCGTCGGCAA 21753 29 100.0 32 ............................. GTCGCCGGGAGCAGCGGGCTGATCGACCTGCC 21814 29 100.0 32 ............................. CACTCCGCCGGAGGCCGCCACACCTCCGCCCC 21875 29 100.0 32 ............................. ACGCTCAGAGGTGAGCAGGTCAAACGGTCGGG 21936 29 100.0 32 ............................. TCCTGCCAGATCGCGTACCGGTCGTCGCGGTC 21997 29 100.0 32 ............................. CAGCGGCCGGGGTCGGTCGTGCCGCGCCGCTT 22058 29 100.0 32 ............................. GCCCTGGTGTACGCGCAGCCGCAGCTCGTGAA 22119 29 100.0 32 ............................. GGCCCAACGTCGTCATTAGCGGCGTCGACCGA 22180 29 100.0 32 ............................. CTCACCTCGTTGAAGTCGGATGTGGGCGTGGA 22241 29 100.0 32 ............................. TCCCGATGATGATCGGCCCCGGTTCGCGCGGC 22302 29 100.0 32 ............................. GCCGCCTCCGTGCGCGCATCGAACGGTCCGAG 22363 29 100.0 32 ............................. TCCGGGGCGGCGGCCCACCGAAAGGACCCTCA 22424 29 100.0 32 ............................. GTGCCGCCAAGGCCGCCGCACGCGCAGCCGAA 22485 29 100.0 32 ............................. TTCTGCGAGAAGCACCCGCGTATCCCGTACAC 22546 29 100.0 32 ............................. GCGACCCCGCCGGACGTTGCCACGTCGACCGC 22607 29 100.0 32 ............................. GCGATGAGGCGGGCGGCATGACGAACCCGGTG 22668 29 100.0 32 ............................. TCGTTGCGGTCGTCGAAGCTCAGAACGAGCAG 22729 29 100.0 32 ............................. AGGGGCAGGTACTCCACGTGCATGCCGGGCTC 22790 29 96.6 31 ............................G TGGATGAACGGAGATGACCAGTGAGCCCATC 22850 29 100.0 32 ............................. GCCTTCCCACGGGCTGGGGCTGGTTCCGCCAG 22911 29 100.0 32 ............................. GTCACGCGCTGCCCGAGACGGGTCCGGGCCCG 22972 29 96.6 32 ............................T TTCTCCACCGTCTCGTCCCGTGGCTTCATCAC 23033 29 100.0 32 ............................. ATCCATGCCCTTCGCCAACGTCTCGGTGGCGT 23094 29 100.0 32 ............................. AGTGACGGCCGGACCTCCGTCTGCTCCGCCGG 23155 29 100.0 32 ............................. ATCGACACCAAGACCCAGGCCGAGGTAAAAGC 23216 29 82.8 29 .......................CCC.GG CCTGCGGCCGACCCCGCCCGGAGGCGGGG 23274 29 82.8 0 ...............A.A..C..AC.... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.6 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : TGGCAGGCGAAAGCCGGGGTGGCCTTGCCGATGTCGTGCACGCCGGCCAGCCACACGGCAAGGGCACGTGCATCCGCATCACGCTGCGGCAACGCCTCGGCCACCAGCCTCCGCACGCCTGAGGGCAGCCACTGGTCCCACAACTCACCGGCGACCGCGGCACTGTCCTCCATGTGCCGCCACAACGGCAGCCACCCATCGGCGTCCCGGTCATGCTTGGCCCACACGGCCCGCGCCGGCGCCCCTAACCGGCTCAGCAGGCTGGGACGGGCGCTCCCCCCATCGCTCATGGGGGATTGATACAGGGAGGAGCGGGGGTTGCGCATCAGAATGAGCGAACTGTTCCGTCTTCATGAATTCAGCACAAATTCTTCATATGCTGATCGATTGCCTTGCGCTACACCCCGCCACAACGAGGAACCCGAATGCCCTTTATGCCGGATTCTTTAGAAGTCATGAAAACAGGCCTCACCCCCCAATAAACTCGCAGGTCAGGAAGT # Right flank : CGGAGCGTGCCAGCCGCCGGAGGCGACCAGGTCCTGCCTCCCGGCCCCACAAGCCACGTAGCCCGCGAAAACACACAAGGGCGCCGCTCCCCCGTCAGGGAGGAGCGGCGCCCAAGGAAAAGCGCGGACCGTGGCCGGGGAACCCCCGGCCCGGCCAGCTGACGTCAGGCCTTCGCCTCGGCCTTGGTGTCGATGTTGGAGGTCGTCACGTCCTTCTGCTTGTGCGACTTGTCCAGGACCATCACCAGGCCGGCGATGACGAGGAAGAGCACGATCGGGGCGGCGACGTAGAGGCCCAGCGTCTCGATGACGCTCAGGCCCGTGCCGGGGTCGTCACCGTCGTCGCGGGTGAGCGCGAGCGCGGGGGACGTCATGAGCAGCATCATCAGCGTCGTACCGGCTGCCAGGGCGCCGGCGCGCAGGGCGTTCTTCTTGTCCACGGTGCAAAAGGTAGCGAACGCCTTCCGGGGCCGCGCGCCCGGGGTGCCATACGGGGCTGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6120-7118 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAGMY010000186.1 Streptomyces sp. SID8111 contig-22000006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 6120 33 100.0 28 ................................. TCCGCATCGGCGCCGGCGTCCCGGTCCT 6181 33 93.9 28 .............................G.A. TCACCCACGACCCCGTCCGCGCCGCGGC 6242 33 90.9 28 .............................TA.G AGGCGGCGCACGCGGAGCTGCGGGAGCT 6303 33 93.9 28 ..............................AG. GCACGACGTAGATCTCTCCGCCGTCGTC 6364 33 97.0 28 ................................A ACGCGGGCGGCCTGCACGACCAGCTGCA 6425 33 93.9 28 .............................C..T CGGCGGCCGGCCGCCCCATGGTCGACGT 6486 33 87.9 28 ........T....................C.GG GCACGTCGAACGTGGCGAACTGGAGGTC 6547 33 93.9 28 ..............................T.A AGACCAGGCGCAAGATGGGCTGGGTGGC 6608 33 97.0 28 ................................G AGCTGGGAACTGCGCCCGGTCTCACGGT 6669 33 90.9 28 .............................CGG. CCTGCGCGTTGCGGAGGCGGCCGTCAGC 6730 33 84.8 28 ...............A.............GAGT CGTGAGGATCCCCGCCCGCATGGCGGCC 6791 33 93.9 28 .............................C.G. GCGGCGGCCGGCGCCTCGGACTCGGCGA 6852 33 93.9 19 ...........T.................G... AGGCCAGAGCGGAAACGAC Deletion [6904] 6904 32 81.8 28 .G..-.T...G..................G..T CGGGGTTCTGGTGGATCTCCAGGTCGCG 6964 33 87.9 28 .......T................G....TG.. AGAGGTGCGCGGCGCCGGGCTCGTGCTC 7025 33 87.9 28 .......T.....................TT.G ACGGGCACCGGCTGGTCATGTGGCGCAC 7086 33 75.8 0 ..G.....T.......G.....G.G....GT.A | ========== ====== ====== ====== ================================= ============================ ================== 17 33 90.9 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGACCC # Left flank : CGTCCAGGACGTCCAGTCCCTGCTCACCCCACCCCGCACCGCCACAACCGACACCGACACCGACGAAGAACGCTCCGAACGACGCGACGTACGCATGGTCCACCTGTGGGACCCCCCAAACGGAGTCCTTCCCGCAGGCGTCAACTACGCCAGGGGAGAACCCTGATGCCCTCCATGGTCGTCATCGCCACCACCGCCGTCCCCGACCACCTGCGCGGCGCCCTCAGCAGATGGACCAGCGAAGTCGTACCCGGCATCTTCGTCGGCAGCGTCTCCGCCCGCGTCCGCGACGAACTGTGGAACGCCGTCGCCGACGTCGTGGGCAACGGCGCGGCCCTCCTGGTTCACCCCGCCGCCACAGAACAGGGATACGCCATCCGTACCGCGGGGACCCGCCGCCGGGTCCCCGTCGACTTCGACGGCCTTACCCTGATCCGCATGACCGCCGCACCCAAGGCAAAGGAAACGCAAAGCCCTTCTTAAGGTCCAGGTCAGAAAGT # Right flank : ACGCCCCGCCTGACGCCTGTTCCGTCGGTGGGGTGGCCCAGCCGAGTCCGAGGGCGGCGAGTGCGGCCAGCTTGTCCGCGGTGAGCTTGGTCCGGCGGCTCTTGTGGTTGGACAGGAACACTCCCAGTTTGACGACGTGTTCCGCGCCGTCGACCACCACGGTCTCCTCGTGCCCCCTGGAGGGCGTCAGGGAGCCCGTGCGGGCCTTGTACTGAGCCAGTGCCGCAATGCCCCGTTCAAAGGCCGCTGAACGGCCCCCAGACGGTCGTCTGCCCGCCGCCGCGTCTCTAGTTCCCGCTTGTGCCGGTACGGTCTGCTCGGCAGGCTCCGCACCCAGTCGGGCGAGTCGGTCGCGCTGCCCGTGGCTCAGGAGCGGCCAGTCCTGCCGCTGGGTGGCCAGCCACCGGCCGACGTCCATGCCGTGCACGACCGTCCCCGGCTTCACCGACGCGAGATCGACACTGTCGTCCACCAGGTTCTTCAGCGTGGCGTAGTGGCGC # Questionable array : NO Score: 3.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:0.25, 7:-0.05, 8:1, 9:0.13, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //