Array 1 9833-8243 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTG010000014.1 Synechocystis sp. FACHB-898 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 9832 36 100.0 36 .................................... CTTTAGGTGGGCGTTGACCTTTAGATTAGGAATGGT 9760 36 100.0 36 .................................... AGCGCCACAGCTGACAGAGTTCCTGAAGGAAGCTAA 9688 36 100.0 35 .................................... CTGAGTGATTTTTATCAATTGTCGAGCTTAGTAGT 9617 36 100.0 36 .................................... ACAGGAGTGTTAGCGCACTGCCTGTCATTACTATTA 9545 36 100.0 39 .................................... TTAGATTGCGGGGGCTAGTGACGCCATAGTTTAACGACA 9470 36 100.0 36 .................................... AAAGATATTAGGCTATCCTTCGGGGTAGTCTTTCTT 9398 36 100.0 35 .................................... AAGTGTTGTTGCCTAGTGTTATACCAGAATATCCC 9327 36 100.0 37 .................................... CTCATTAGTGCTATCTTCTTGTTGATGGATTAGAACA 9254 36 100.0 37 .................................... TCTACTCTGGTGAAGACCAAGTGGATTTCGTGGTGAT 9181 36 100.0 36 .................................... GTTAGTGCTTGGTTGTGGTTATGCTGCAACTAAGCC 9109 36 100.0 37 .................................... ATCGATATACTTTTTAGCATCAGCTAAATGATAAAAA 9036 36 100.0 35 .................................... TTAGAAAGTTTTGGTTAGTTTCCATTCCTCTTTTT 8965 36 100.0 39 .................................... ACCAAGCTAGTCACTATCCGATCAACCGTCGTTGCAGGT 8890 36 100.0 42 .................................... TATCAAGAGTTGTCTAGTCAGTTCCAAGAAAAACCCTGGGAG 8812 36 100.0 41 .................................... TGACCTGATTCCTCGAGAATTGAGACTCCTAAAGAAATTGC 8735 36 100.0 35 .................................... AGTTCCAGTCGTGCTCCAAGGGCTCTTCGTCTTCA 8664 36 100.0 47 .................................... AACTTTGGAAAATTGCCTTCATACCATTCTTTTGTTAAACCGTTGTT 8581 36 97.2 37 ...........C........................ AGCAACAAAACAGCCAGCAGCAATTAATAAATCAGTT 8508 36 100.0 39 .................................... ACTCCGTGGCGTCGTACCGGTACGCCTGGGCTTCGTCCA 8433 36 100.0 43 .................................... TGAAATAACCCCCATAGCGGTGGCCATGGGGGCGTTTTACTAA 8354 36 100.0 40 .................................... ATATCTGTTAGCTCAATTTGAGCAAGTTCATCATTTTTTA 8278 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 22 36 99.9 38 GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC # Left flank : TTAATTCGCTAATTGATGTTTCTCTATGTTATTGCCTACGATATTCCTGATGATCGCCGTCGTAAAAAGATGGCCGATTTATTAGAAGGTTATGGCCAAAGGGTGCAATATTCTGTATTTGAATGTACATTGTCTAAGTCTAAGTTTAATGAATTGCAAAAACGTCTCCGCAAAATTTATCAATCAGAGGAAGATAGTTTGCGTTTTTATCCTTTGTCTGGGCATACCCTCACCCAGGTTGATATTTGGGGGGAACCACCACTCACTAAGCCCCCTGGCTCAGTCATTGTCTAAAATCTATGCTGATTATTGGTGTACCATTGCGAGGCTGATGGAAAATCGCTGTAATGTCCGTTTTTCGTTGGGAGCCTCGATGGCTTACTGTATAAGGATTTCAGCCGCTATTTTTGCGTTGAGCTTTTCCGATTATGGTCAATTTTTGCTGAGCCTCGCAAATGAGGATTGGATGCCTTGTCCCGTAAGGCTTTAAAATGGGGGCA # Right flank : TAGCTACGATAACAATTAGTATTACAAAAATATGAATTGAATTAATAATTTAGCCTACGGGAAAATAGGTTTTCTACTGCCATGCTAAAAAATAGATGTTGAGTTAAGTCATCCACCATGCAACTAAAACACTGGCAATCTCAAAAACAGGAGCAAAAAAAGAGTCCAGGGGCTCCCAAAAAAGTGCGGCGACAAAAAGCCCGCCTGCAAGCCCTACGAAAAAAGCTCCATTCTTCCTGGGCTGGAAACCAGCCATAATAATTCGTTCACCAGAACTCGCAATTTTTCACGGAGAAGCCGACAAACATGAATAGTATTTTCACCATTAACCCCTATTGGACCGGAAGCACCTGGGCGTTTGATGCGGCCGAAGTGGGTCTATTAGGGGAACCCTTTGTTTCCGGAGCTGACGCCATTTTGAGCGCCATTGTCAAGCGGGAACTGGCATTGGAGACAGAACAAGGCAGTCAATTCGAGCTAATCTTCAGTGCCGAAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 2 31137-27159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTG010000014.1 Synechocystis sp. FACHB-898 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 31136 37 100.0 36 ..................................... TGTAGTAGAACCAATCGGGGTCGTCAATAACTCCCG 31063 37 100.0 40 ..................................... CGGGGCTTGGGGGGTTGGAGTCCCCGCCCCCGTGGTGGGA 30986 37 100.0 42 ..................................... TGTGAGTTGCATAATGCCTCCTAATGGCTGTTGGACTCATAA 30907 37 100.0 36 ..................................... CTTGGTATTTGTAGTTCTCGATGAGTGTTTTAGGCA 30834 37 100.0 36 ..................................... TGATAACGGGATGCCAGCCCTAAAGGTGATGAGCGG 30761 37 100.0 39 ..................................... CGTTATCCGGCAAAGAAACCACACTACTAAGCTCGACAA 30685 37 100.0 39 ..................................... TGGGCCGGGCGCGAGTTGTCCTCCTGTCCGAGGCCCCAC 30609 37 100.0 35 ..................................... CTATTAAGGCTATTTTCGCCACTTCTGTTTGAAAG 30537 37 100.0 44 ..................................... GTCACACCTCTTCACGAATCCTCACATCATGAATAAGCTGCACA 30456 37 100.0 39 ..................................... CGCGGGTCGAGATGTCGCTGGACACGCTGGTGCCGGACA 30380 37 100.0 38 ..................................... CTGGGCGGACTGGAGTTGCCACCTGCCGATGGCCTGCA 30305 37 100.0 41 ..................................... GAGCCAAAGTCAACTAGCACAGGCACGGCAAGCCATCCTGA 30227 37 100.0 38 ..................................... TCGTGCATCTGCGCATAGGAAGAGGTTAATTCCTCAAC 30152 37 100.0 38 ..................................... AACGGGCAGCCCGAGTGGTGGGCATCGAGGTGGTGCTC 30077 37 100.0 40 ..................................... CCCCGCCACATTTTCGGATTAGAGGATTTGAATCGGCCGT 30000 37 100.0 42 ..................................... AGTTTCTCAAACTTTTCGGCGATCGCCGTCCAGGTGAGTTGA 29921 37 100.0 43 ..................................... TAGCGAAAAGTTATAGTTACCTTTGACCGGAGCTACCAACTCA 29841 37 100.0 35 ..................................... CCCCGCTGCCACGAGGGCAGCTGTAGACGCACCCC 29769 37 100.0 40 ..................................... TTAAATATACCCATCCCTAATAAAGGATAGAGATCTTGCA 29692 37 100.0 37 ..................................... GCTCTATTCTAATAACCCAAGCTTTTTTCAATTCTAA 29618 37 100.0 41 ..................................... CCGCTTGGTAGGATTGACCACCAAAGCTAGAAACAGGCACA 29540 37 100.0 35 ..................................... AGGGCGGTTAATCACTAGCGGCGATCTAGATATTG 29468 37 100.0 45 ..................................... TAGACTTCTATTTCCCCTCTTGCCGAGGGATGATACTGCAATTGA 29386 37 100.0 38 ..................................... TGCGCTCTCTTATCAAACGCCGCAACGCCATCAAGGCT 29311 37 100.0 39 ..................................... ACGAGCGGAATCTTCTATGGATCGGATCACATCCTTAAT 29235 37 100.0 37 ..................................... CTGGTGTCGGGGTTGTAGTATTCGTCTCGGTACAACA 29161 37 100.0 40 ..................................... ACTATAGGGAGCGTTACCCTAGCTAGACATTGCCTAATCT 29084 37 100.0 40 ..................................... AAGAAGCAGAATAATGCGATTGAGTGGACAAAAATAAGAA 29007 37 100.0 34 ..................................... GGTTACGTATCGGCGTAACCGCCACTCCTTAGAG 28936 37 100.0 39 ..................................... CGCCTCCTGCGCCCTGGAGGGGTGATCCTACACCTCGCG 28860 37 100.0 36 ..................................... GATTCTGGTATACGTTTATCCCACCACTCCTTAGCT 28787 37 100.0 35 ..................................... CTCGTAAGCTAGGCAACGGCCTTGCTCGATGCACA 28715 37 100.0 36 ..................................... GGTGCAGCTGCGCCTAAGGAGATGGCTGTACAAGCT 28642 37 100.0 39 ..................................... CACCTAGAGGGTACCTCCCGGTTAGACCGGGGCTCTTAT 28566 37 100.0 36 ..................................... AACATGGCCACAACAACCTTCCCGGAGCAAGGGATG 28493 37 100.0 40 ..................................... GGCGATATTTGGCGTGCCAGCCAAGTGAATTTTGGCGCTG 28416 37 100.0 40 ..................................... CTAGCCTTTGTGGCTAACCCTCCTGCGCTTTGACATATAG 28339 37 100.0 35 ..................................... TTTTACCTCTTGCTCCTGCACAAGCTCAGCCTTAA 28267 37 100.0 36 ..................................... TCCTCCTCGCCTCTGAGAAAGAGTATGAAACACTGT 28194 37 100.0 37 ..................................... ATGAACAGATTGCCATCTTCTAGGCGGATAGCCTGGG 28120 37 100.0 40 ..................................... CGCCCATTGTTTGTGCTTCCGGAAGAAGTCTTTCAACTTC 28043 37 100.0 43 ..................................... GTTATCACGAGTTATCTTGCGCAAATCTTGTAGTGCATCTTTT 27963 37 100.0 37 ..................................... TTTAGCGGAGGAGACCTCTTCTATTTCTCCTATAACC 27889 37 100.0 41 ..................................... GGGAGAACCCTAAAAAGTTCTCCTGTCTAATCGCCACCTGT 27811 37 100.0 35 ..................................... CGCTCCAGAGTGCGCCGCCGCCGAATTGCGGTCCA 27739 37 100.0 45 ..................................... GAGACTCTATCTTTGGAGTTTCTAAGACATTGGCGGTTTCTAGGG 27657 37 100.0 41 ..................................... ATTGCTTGGCGTAGGTTGACTTACCCGAGCCTGGGAGACCA 27579 37 100.0 40 ..................................... TCCAAGGGCTCTTCGTCTTCAAAGGCCTTAGTTACCTCTG 27502 37 100.0 45 ..................................... ATAATAAAGCACCCTCAACGGACTATGCCATGAACAACAGGACCC 27420 37 100.0 34 ..................................... GTTGCCAGTTTTGCCGTTTTTGCTGTTCTGAGAT 27349 37 100.0 46 ..................................... CCCATAATAATTAGGCTCGCTACCATAAGGGGAAACTTCTTCCAAG 27266 37 100.0 34 ..................................... GCGCCTGAGGTGGTCAATAGTGACCCCATGGCTC 27195 37 97.3 0 .......................T............. | ========== ====== ====== ====== ===================================== ============================================== ================== 53 37 99.9 39 GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC # Left flank : CCCAGTGGGGGAACGGTGCTGACACACCCAACCCGCGACTGGGTTTATTTATGTTAGTTTACCCTTTCTATGGGTTCAAAATGTGTCTATCCCGACAAAATTAGGGCTATTACAACAACTCGTTGACACTGGCCATAAGTCTCAAACCCTTGTCGTGTCAGCGTTTGCTCGAAGTAAAAAATAAAACTCGTGGACACTACCATAGACAATATTTGCTTCTGTAATTGCTTCCCAAATCAGATCAAGTTTTGTTAAGCACTTGACGATTTTCAGCGGACGTTGTAGCAGTGAGCCTGACTTTGTCTGACGGAGCTTATGTAAAGTTTTATGGATTAATGCTTGCTTTCAGCAAATTTAGGTATTACTATGACCTTTATAGCCAAAAATAAGGCTTTTTATTGTTATGTTTTCAGTACGTAACAAATCGTTAAACGTCTACCTCTTGTTTGGCGGATTGGCACCTCGAAAACCGCATACAGACTGTTTTTCAGTGTGATAGG # Right flank : GATCAGCAAAAGTATCTCAATTGCTGACAGTGTCATAAACCTGAACAAGAGTCATTCCACGTCCAGAAATATTAAGCATTTCGTTGTTCAATTTTTTTACTACTTGCCGTAAGCCCAACCATTGATAATATCAATCAACTCATTGGACCAAGGGTTAGGATTGCGGTCTTGATAAATTTGCCAAAGAGACTGATAGTACCAAATAATGCCAGATTTGCTCCGACTGAACTTTTGCCAAATATCATTCCCATAGCGGTGTAGGTCGATCTCAATAGTGCGGGCATTATGGAGAGTATCCGCCAAAGAAATTTTCAGCACAGCGAGGGAAATGCGAGACATTTTTTGTAAATGCTGTTGTTTTCTCTCTTCCCAGGGCGGTTTCGGCACTGTGGAGCTATCGGAACACCCCAACACTAATTGAGCTACGGTTTCCCCAAACTTTTCCCGAATTACATTGAGAGTGGCTTCTCCCCCTTGGTCCTCCACCGCATCATGGAGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 3 83096-79656 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJTG010000014.1 Synechocystis sp. FACHB-898 contig14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 83095 37 100.0 35 ..................................... GATTGTTGTGCCCCTGGCGGTCGCTTTCAATGCCT 83023 37 100.0 37 ..................................... TAATCCTAATTAGGTTTGAGTTAGTATCTAGTGCCAT 82949 37 100.0 33 ..................................... ACAGATTTTGCTTCAGCTAGTACCAAAGGCTAG 82879 37 100.0 37 ..................................... TCGTAACTACCTTCTAAGTCTGTAGCGATGAATGTGG 82805 37 100.0 37 ..................................... CAAAATATAGGGAAGAATTTTAGAAAGAACCTCAGAA 82731 37 100.0 39 ..................................... AACTAAGGCATCCCATAGCATTCCGCTACGATCTATCAG 82655 37 100.0 35 ..................................... TAATAATTGCTGATTAATCGTGGTGGTGGTGGTGG 82583 37 100.0 36 ..................................... GATATATGGCTAAATATTGCTCAAAAGATTTTAATA 82510 37 100.0 35 ..................................... ATTAGATTGGTCGTGTTTTGATTAACGGTGCTAGC 82438 37 100.0 35 ..................................... TTGCCATCCCAGGCAACATAGCAAGCATGGAGGTG 82366 37 100.0 35 ..................................... TTGCCATCCCAGGCAACATAGCAAGCATGGAGGTG 82294 37 100.0 36 ..................................... TTGCGGACAGACTCGATTAAGTCAATAACAGCTTGG 82221 37 100.0 36 ..................................... CTTGCCCTAATTTTCCTGGTGGAAAAGCCGCTGGCT 82148 37 100.0 35 ..................................... ATAGCAAGTTGCTAGAGAAAGCGCAACAAAACAAG 82076 37 100.0 34 ..................................... GAGGTTAAATTGTTGTCGATTCAAGAAGACTTGA 82005 37 100.0 36 ..................................... AATAGACACGAATTCCGGTTCCAGACCCAGCCCGTT 81932 37 100.0 35 ..................................... TTCTTCCATCAGTCCAAGTTCTTCAACAATGTCTA 81860 37 100.0 35 ..................................... TGCTGAAGAAGCTGGAGAGAATCGGGCATCGCTAT 81788 37 100.0 35 ..................................... ATTCCAGATGTGGTGGAAGAAACCTACGCCCCCGA 81716 37 100.0 32 ..................................... AATCAGCTTCCGGCGTTGCCATTTGGATTCAA 81647 37 100.0 34 ..................................... GTGAGGGGGCCAGATCCCTGCCAGATCCCCCAAT 81576 37 100.0 35 ..................................... ATTAGATCTTTGGCATAAGGCAACCGAAACTGATC 81504 37 100.0 35 ..................................... GATTATCGTGCTTCCTTCGATGCTAACTTTGCTCT 81432 37 100.0 35 ..................................... TCCATAATGATTCTGCCTCGTTTCTACTTGGTTTA 81360 37 100.0 37 ..................................... TGTATGTCACGCCATCGGACAGGTAGGGAAAGCCTGG 81286 37 100.0 38 ..................................... CAACTGGCTAAGCTGGTCATAAGGCTTTGGGAATGAAA 81211 37 100.0 34 ..................................... TCGGGTTTCCCTCCTGGGTAATGACGCCTACGGG 81140 37 100.0 34 ..................................... CAAAGCTGGCACGGAAGCCCTTAAGGATATCCTC 81069 37 100.0 37 ..................................... GATGCAGAGATTCCACCACCAAAGGAGAATCCGATAA 80995 37 100.0 37 ..................................... AAAGATTGGGACTTTTAACTGCAAAATACCAGGCTAG 80921 37 100.0 41 ..................................... ATTTGTTGGGCCATCCTGCCCTGTCCATTGAGGTTAAGCGG 80843 37 100.0 35 ..................................... AAGTAAGGTTCAAACGCCGCTACGCAGTCTGGTCC 80771 37 100.0 33 ..................................... CAAAGTTGGAACGAAAGCTAACGACAAAAACTA 80701 37 100.0 38 ..................................... TTTAGCCATCGTCGGATTCTAATCGATCCAAAAGTCGG 80626 37 100.0 37 ..................................... AATCCTACCAAGCGGCTTTTGGTGGGCCTGGCTCCGA 80552 37 100.0 36 ..................................... TTCGGTTGATTGATGAAGATCTGATCGTCGAGTGGT 80479 37 100.0 34 ..................................... TCCCTTTTCGGGGATAGGTGGTGTCCCTTTTCGG 80408 37 100.0 35 ..................................... ACTACCAGGGGGAAATTGATGGTATTCCCGGCAAA 80336 37 100.0 35 ..................................... ACTACCAGGGGGAAATTGATGGTATTCCCGGCAAA 80264 37 100.0 36 ..................................... GGGCAATGTTAAGCATGGCTAGAAGGAATAGTTAAC 80191 37 100.0 33 ..................................... TTCCATTAATGATTCTTCAAAAATCACTCGATT 80121 37 100.0 36 ..................................... ACTGTTACTAGCCACCGCCCAACTCCTTTAATACTT 80048 37 100.0 37 ..................................... TCTTCTGTTACGTAGATTTTTCCTGTTTCGCCAACAG 79974 37 100.0 37 ..................................... CATCGCTCCCAGCATATTGTCCTGAACGGTCGGCAAT 79900 37 100.0 34 ..................................... GATTTTTCCAGTGATGGTGCATACCTAGCCGTAG 79829 37 100.0 32 ..................................... TAGTCCCTCCCACACTGCCAATATTTCTTCAT 79760 37 100.0 31 ..................................... TCCGTCTGTATGACTTATACTCGCAAGGATT 79692 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 48 37 100.0 35 CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC # Left flank : AAAATGCTTTATTTGATTATTTATGATGTCCCGGCTACAAAGGCGGGTAATAAACGACGAACTCGTTTGTTTGATCTCTTATCGGGCTATGGCAAATGGCGACAGTTCAGTGTGTTTGAGTGTTTTTTGTCAGTCAAGCAGTTTGCTAAGTTACAAACGGCGATGGAGAAGTTGATTAAACTTGATGAGGATGCAGTTTGTATTTATGTGTTGGATGAAAATACGGTGCAACGCACGATTACCTACGGGACTCCCCAACCAGAAAAACCTGGTAGTATTATTATCTAAGAAGTCATTCTTCAAATTTTGGCATACCTATAGCGAGGGCCTTTTCCCTGGGGGGGTTGCCAAATTGCTTCTGAACCTTGAAAAATCAATACTTTCACGCATTCAGACTGCGTACTATTTTGAAGGTCTGGCTGATTTTGGAAAGATATTCTGGAAGGTTTGCCAAAGTCTGCTTTCCTCCACTTTCCCCGTAAGGGGTCGGAGGGGGCGGT # Right flank : ACGCCGCCAGCCCACCAGCGCCAGTTAACATCATCTCCAAGTCTAAACTGAACCCCACCAGTAGCGCTAAAAACAGCTATTTGAGAATCAGCCATGATTGTTTTCCCCGGTTGCAGTTTTTAGTTTAGAGCTTTCTCCCCTGTCCACTTTTTCGGGGCCACCTTACAGCCCTGGTAATAGGATTTGCTTCTCACTGCCATCACTATTGATGGGACACTCCACTCACGTAGTTACAGAAACCTCCCTTGTTAGGAGACCACTGCCATATATTTTGCTTTTTATCAAACGAAATTACTGCTTATATTTTTTGACTCTAAAACAGCAGTCACTGGCACAATTAGATTAGGTTTATTGTTATATTCCTATGCCTAAACTTAAAAAGCTTACTCCCAAGGCCGAAGCCCAATCTGAGTCCACCAGTCTAGACCGTCTAAGGGAACTGGCCCAAGACCCCAAACTGGCCAAGCTAGTAGCGGCTAATTATATGGCCCCACCGGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-D [Matched known repeat from this family], //