Array 1 3751616-3752254 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026202.1 Escherichia coli strain ECONIH5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3751616 29 100.0 32 ............................. ATACGCCCCAACCAGAAATAAATTTAGGGGAT 3751677 29 100.0 32 ............................. CAATATTCACAATGTGGGATATATCCGATCAC 3751738 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATTAGA 3751799 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG 3751860 29 100.0 32 ............................. GCGGCGCAGGGATTCGTACAGTCAAAAACGCC 3751921 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 3751982 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 3752043 29 96.6 32 ................T............ TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 3752104 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 3752165 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 3752226 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACTGCCTCTATGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATGGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTTGTCCCGCATGGAGCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3780504-3781814 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP026202.1 Escherichia coli strain ECONIH5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3780504 29 100.0 32 ............................. TTTCAGAAAAGTACGGCTCAATTGATCGCCCC 3780565 29 100.0 32 ............................. CGCTGGTGGCGGAAAACAGCCAAAATAACGCA 3780626 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC 3780688 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 3780749 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG 3780810 29 100.0 32 ............................. GCGGAATCTGCTGCGCACAAGTTACACGGCGC 3780871 29 100.0 32 ............................. CCTTGATCGGATTCCAGAAACGAACCACTAAA 3780932 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG 3780993 29 100.0 32 ............................. TTTAGCTAATATTGGGCGGCTAACGTCATCAA 3781054 29 100.0 32 ............................. GTTAAATATTGTTCACCATCATGGATCAGGAA 3781115 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 3781176 29 100.0 32 ............................. CATGAACATGGACGATGAAAAAATAAGGGAGG 3781237 29 100.0 32 ............................. AATTAAATGATTTTGATGCGCGCCGACTTGAA 3781298 29 100.0 32 ............................. CCACGCGGCTGCATTCAGTGATATCCAGTTTG 3781359 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 3781420 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 3781481 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 3781542 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 3781603 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 3781664 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 3781725 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 3781786 28 72.4 0 .AA........C..T....A..-.C...C | T [3781805] ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //