Array 1 1024396-1025683 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP072329.1 Streptococcus lactarius strain CCUG 66490 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1024396	    36	 100.0	    30	....................................	CATTTGCTCAGTTTGTCGGCTGGGAGAACT	
   1024462	    36	 100.0	    29	....................................	CATCTGTTGAGCCACCTGTTGCAGTAATA 	
   1024527	    36	 100.0	    30	....................................	TTGGACGATAGGATCACGCTGGACGAATTA	
   1024593	    36	 100.0	    30	....................................	CGCAACAATCGCAGCAGTCGCAACAGTAGG	
   1024659	    36	 100.0	    30	....................................	TATCTAGCTGGTATGTCAATAACTAAGTTG	
   1024725	    36	 100.0	    30	....................................	TCGGCAAACGGAAAAAATACCAATTATTAC	
   1024791	    36	 100.0	    30	....................................	AAGCGAGACTACTTTTGATACGTATGGCCT	
   1024857	    36	 100.0	    30	....................................	AGTTAGAAGCGTATATTGAACAGGCTGGAG	
   1024923	    36	 100.0	    30	....................................	TTTGGAATAATCTTATAAACATTTCCTTTA	
   1024989	    36	 100.0	    30	....................................	TCGCACTGGTCTGGCTCTCTGGTCTGATCT	
   1025055	    36	 100.0	    30	....................................	ACGACCAATCTTGTCACGGAATACCTTTGA	
   1025121	    36	 100.0	    30	....................................	CTTTGGTTGAATGATAACTGCTCCGCAATA	
   1025187	    36	 100.0	    30	....................................	AAACAGATGCACCAGATAAGCTCTCACGCT	
   1025253	    36	 100.0	    30	....................................	AATTCCCGTTACGCTTCCCGTGAGATATTG	
   1025319	    36	 100.0	    30	....................................	AGAGCTTCAGGAATTGCTTATTGGGTTCCT	
   1025385	    36	 100.0	    29	....................................	AGTTCCAGCTTTCTTTAATCCATCAGTAA 	
   1025450	    36	  97.2	    30	...........A........................	CTGTCATGCCATCACGTTTGAACGCGTTTA	
   1025516	    36	 100.0	    30	....................................	GATTGCTTCATCTTGCTATCGAATGTCCCA	
   1025582	    36	 100.0	    30	....................................	AAGACTATCGTCATGACCACCGACACGGGC	
   1025648	    36	  94.4	     0	.............................T.....T	|                             	
==========	======	======	======	====================================	==============================	==================
        20	    36	  99.6	    30	GTTTTAGAGCCGTGTTGTTTCGAATGGTCCCAAAAC	                              	       

# Left flank :   ATCAATTGAATGAAAAACCTGAAGTAAAGTCAATGATTGAGAAATTAGTCATAACGATCACTGAATTATTGGCTTATGAATGCTTAGAGAATGAATTGGATCTAGAATATGACGAAATCACTATCCTAGAATTGATCGAAGCATTAGGAGTCAAAGTAGAGACACTGAGTGATACGTTATTTGAAAAATGCATGGAAATTGTGCAAGTTTTTAAATATCTTTCTAAAAAGAGACTTCTTGTTTTTATAAATGTTGCTTCTTACTTGTCAGAGAAAGAATTAGAAAGTTTGATGGAATATATTAGCTTAAATCAATTATGTGTCTTATTTATAGAACCAAGGCGAGTTTACAATTTTCCACAATTTGTACTAGATAAAGATTATTTTTTAAATACTGAAAATATGCTATAATAGCAGTAATGAAGGGATTCAGACGGACTGAAGTCTAGCTAAGACGAATGGTGCGATTACGAAATTTCGAAAGAAAAATTATTCTACGAG
# Right flank :  TTTATTTTTTGTATGTTATAAAGGAATATTTTAAAAATGAAGGGATTTTCTATGGAGAGTGATGTGTTTTTGGATTATTATTTAAAATCACTTAGATTTTATTTTGGTGATAGGTGTAAGGATATCGGATTTATAAAGTTTTTCAAAGATGAGAATAATTGTTTTATTACTATTGAGGATTATGTTTTGGAATCATTTGTAGTATTGTCAAATATTTTGAGTAAGGAGAGGATTGTGTTTTCTTGTGGAATTATTCATAGTAAGTGGGGAGTTACTGGAGTAGAAGTATGTATGAATGTATTAGAGTTAGAAAGATTAAATCATTTGTATAAGATATAGTTTTAAAGAATATTAAAAAAATAAGGGAAACTGTCTATGTAGGATGTGTGGAGTTGATAGTATCAATGCTTCCTGGTTTTAGAGCTGTATTCTTTCGAATGATCCCACAACGAGAAAAACAAAAAATGATGGTCTAGGAGCTCGATACATTGAGCTTCTTT

# Questionable array : NO	 Score: 6.24
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCCGTGTTGTTTCGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 95% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.80,-2.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.27   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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