Array 1 1498127-1497733 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT706966.1 Actinotignum timonense strain Marseille-P2803T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1498126 28 100.0 33 ............................ TGGATTCAGGAAAAAGTGGTACCGGCGCTTAAG 1498065 28 100.0 33 ............................ CATGGGTAAATGATTGGAGTGAGGGCGCCGAAA 1498004 28 100.0 33 ............................ TGATGATCCTACACGCAGCGCAACCCCTCACGC 1497943 28 100.0 33 ............................ CGGCCTGGCATAATCCCGAGGGGTAGTGAGATC 1497882 28 100.0 33 ............................ CAAGGAGTTGCGCCTCGATCTGGAAACAGCAAT 1497821 28 100.0 33 ............................ CGCCATCGAAACGGTTAAGGGATTCTTTAGCGA 1497760 28 75.0 0 ...........ACGA.C.....C..C.. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 96.4 33 CTCTTCCCCGCGTACGTGGGGGTAATTC # Left flank : ACCGATATTGCCGACGGCAAGGAGCACGCTACTGACGCTTAGGAACCTGCTTTCCGCAGGAACCAGATCTCCAAAGGAACCCGGTCACCAGCACATCTCACCGCTGCTTGGCCACATAGCGCCGGGCAAGATTGCCTGTTCGGTGAGGGCGTGCAGTTTCGGTTACGCTAGCCGTGCAGTTTTAACTTGCGCTTGACAGACAGCATGTTAAGGGCAAAGAACCAGGCGAAGAAGATACACATGCCCCGTCATACTGGGGCACCGCCGGTCTGGTAAGCGCTCTGTCACCATAGTCAAACCTGGTAATCAGAAGCGCCCCCCTTGTGTCCGATAACGACAGGCAGGACGTAATAAGCTAAATTTGAGGTGTGGGAACTGACATGCTCGTGACACGCGGAGCACTGGCGTACCGGGAATTTCTCGCAGCGAACCGTAAATTTGGAACTCTATTCCAGTCAGATTTCCGGATCTGCCGCGAGTAAACAACCAGGTCAGGCAGG # Right flank : CGCTGCTACCCCACACCACTCACCTAAAGTAAACGACGTGCAATTTCGTTTGCGGCAGATTGGTAACTTCACCAACCCCGAGATCTACAGCTTCAAGCCGTGCCACTCATTGCGCGGAAACGCTACCGCACCAGCCCTTCGCGGCGCCGTGCAGCAGACATCGCCCGCTGCGCCTCCCGGTCCGCCTCGCGCCGGCGGATTGTTTCGCGCTTATCCCATTCCTGCTTGCCCTTGGCCACCGCGATTTCCAGCTTGGCCAGCCCGCGCACGAAATACAGCTCGAGGGGCACAATCGTATAGCCCTTCGCCTCGACCGCCCGCGCCAGCTTCTCGATCTCCGATTTGTGCAGCAGCAGGCGGCGCTTGCGGGTAGGCGCGTGATTCGTCCACGTCCCCATCGCGTAAATCGGGATATTAATCCCGTGCGCGTACACCTGCCCGCGATCCACCTCAATCCAGCCGTCCACCAGCGAAGCACGCCCCATGCGCAGCGCCTTCAC # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGTACGTGGGGGTAATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-11.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1959285-1957667 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT706966.1 Actinotignum timonense strain Marseille-P2803T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1959284 29 100.0 32 ............................. GCCGTGAACGCGCTCTCCTCAGCTCTCAAGGG 1959223 29 100.0 32 ............................. GACTAACGAAAGGTATACATAATGTTTCACAC 1959162 29 96.6 32 ............................T GCCTACGGGCCGCTACTTTGCGCGCACGGCAA 1959101 29 100.0 32 ............................. CTGAATCCAGGTCCCCTGCGTCTTCGCGTACT 1959040 29 100.0 32 ............................. GCATCGGCGGGTCGCCGCGTGAAAGTGAATCG 1958979 29 100.0 32 ............................. TGGTGCGCGCGCTCTTGTTAGGCAGTAGGGAA 1958918 29 96.6 33 ............................A TAGCAACTCTCAGCTTTGGAATAATTGACTGCA 1958856 29 100.0 32 ............................. GTGCAGCCGCTCCACGTGGCGGGCACGCTCAC 1958795 29 100.0 32 ............................. CTGCATGCAACGCACGCGCATTAATTACGCGG 1958734 29 100.0 32 ............................. GCTCGAGGTGGTGAGCTGGCCGTTGGCGTCGC 1958673 29 100.0 32 ............................. GCTCGAGGTGGTGAGCTGGCCGTTGGCGTCGC 1958612 29 100.0 32 ............................. CCTGAGAAAGGAGAAATAATGTCTACACGTAA 1958551 29 100.0 32 ............................. AACCGGACGCGGCTCGTCGCTGACCGCGAGGC 1958490 29 100.0 32 ............................. AAATACGAGGATCAATGTAACGAGGCTTGCTG 1958429 29 96.6 33 ............................T AACGTAGCGCAGTGACGGGGCCAGTAAGTCACG 1958367 29 100.0 32 ............................. GCATGCGACTGCGTATCGGGTTTTCGTGGACC 1958306 29 96.6 32 ...............G............. GCGTGAAAGAATCCGCGGCCGGCCTGGTGGAA 1958245 29 100.0 32 ............................. CCCTATCCCGAATTACATCCTATGCGACCGGT 1958184 29 100.0 32 ............................. CCCTATCCCGAATTACATCCTATGCGACCGGT 1958123 29 100.0 32 ............................. TCGGAAGGCTTCGTGACCATCAACGGCAACCG 1958062 29 100.0 33 ............................. GCTCAGTAAGTCGTGTGTTTCGCTCCAGCATCG 1958000 29 100.0 32 ............................. GCATCGGCGGGTGGCCGCGTGAAAGTGAATCG 1957939 29 100.0 32 ............................. CCCCAGCGCCGCCGGTGGGTGAGGCTGGGAGT 1957878 29 100.0 32 ............................. ATACGCAAACCGCCCGGCGCATTCGCGATCTC 1957817 29 100.0 32 ............................. CCGGAATGTCTTGCGAATAGAATATTCCGGCC 1957756 29 100.0 32 ............................. GCCAAGCAAGCTCCCCTGCGTTCACTGCGATG 1957695 29 89.7 0 ........................A..GT | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.1 32 CTGTTCCCCGCGCGCATGGGGGTATTTCC # Left flank : ACGGATAGGAGAGCGGGATGTTCGTTGTTGTTAATGCGGTCGCTATCCCGGATCACCTGCGTGGATACTTGAGCAGATTTCTTTCCGAGGTGACCACCGGATTGTACGTGGGAGTTGTTTCCGCGCGAGTGCGGGACAATTTGTGGGAACGCGCCGTATCCGCCGCGGGTACCGGCAGCCTCACTCTTATTTATAACGACGCCGCCCGTGAGCAAGGCTTCGCTCTGCGCAGCACGGGAACCGGCAGTCGCCCAGTCCTTGATCTGGACGGCATGCTGCTTATCGGGACGGGTGCGGAGGATGCGTCTGGGTAGGATGGAGGTGACATGCCAGTATCTTGTGAAGACATGAAGGAGGGATTGAGATAAATTTGAGAGGTGGGAGCTGACATGGTTGCAATATCCGGTGCATTCTCATATCCCGGACAGAGCCACGAATCTGGAACTCTGTTCCACTGTTATTTCCGGGTCCGCCGCCGATAAACGACCAGGTCAGGCAGT # Right flank : CAAGCGCAAGTTAAAACTGCACGCCTAGCGCAATACGAATTGCACGCCTAGCGCAAGGAAATGCACCCCCAGCGCAACTAAAACTGCACGTCCTCACCGAACAGGAAATCTCGTCCGGCGCCCGAATGCCCCTACCGGTACCATCACTCAACGCCGCCTTCGGCGGGCGTCGGTACCAGCCGGCACCCCCCAAGTCCTCCCAAACCACCCCGAAACCCTGTTTCTGATACCCGCAGGGCGGGCGTAGCCCTCCACTCAACGTTCGCCGGCAATTGTTCTCCGCGCGAGTGGAGGTAATTCCATTGAGCGGCAGTCCCTAGAGTTCGTGAAATACTCATCCCCGCGCAGGTGGGGTGGTAATTTCTATCGACGAAGACTGTCTATGAGGTGAGACAAAGCCAATGGTGGAACCACGGGCACCGGCGGGATAATACGGGAGCGTGGCATTGGTGACATGCTGCACCTAGCGGCGTCCGATTTCTCGGCAGCTACCGTTGGTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGCATGGGGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 2236175-2234691 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT706966.1 Actinotignum timonense strain Marseille-P2803T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================== ================== 2236174 29 100.0 32 ............................. CGTATTCATGCCGCGCGGCGAATGGCGCAGCT 2236113 29 100.0 32 ............................. ATGCCTAGCACGCCATCGATGCTGTAATCGGA 2236052 29 100.0 32 ............................. AAAGACCATTGAGACACAGACTGCCGGCTCGC 2235991 29 96.6 32 ............................T ATTGGTGCTGAGATCGGGCGGGTGTTTATTGA 2235930 29 96.6 32 ............................T AATCTCCATTATTGCCCCTCTCCTCCTTGTAG 2235869 29 100.0 32 ............................. GCATATACGGGTGTGGTCATGCGAGGGCGGGG 2235808 29 100.0 32 ............................. TACATGGCTACCATCATGGATAACATCACCAT 2235747 29 100.0 32 ............................. GGGGCCGAGCGGGTCACGCGCGAGCCGGATAG 2235686 29 100.0 32 ............................. AAAGACCATTGAAACGCAGACCGCCGGCTCGC 2235625 29 100.0 32 ............................. GCTTTGATGGATTCACGGGTGCGCGGGAACGC 2235564 29 100.0 32 ............................. CGAGATAGTGCCGTAATTACCCTCGAGATCAG 2235503 29 100.0 32 ............................. ATCTGCCGAGCTTGCCTTGCGAGCAAACAGGC 2235442 29 100.0 32 ............................. AGATTTTAGCGATGAAATTACGGGTATTGCGT 2235381 29 100.0 32 ............................. GGCGGGATGAACAACCCGCCACCGGCCCCCAC 2235320 29 96.6 32 ............................T ATCGCCGAGGCCGAGCTCGGCGGGGAGCTGCA 2235259 29 100.0 32 ............................. GTCGCCGCCGCGCATGATATTCGGGATCATAA 2235198 29 100.0 32 ............................. GCCCGGCGAAACATTCGGCTCTCTCAAAGCTG 2235137 29 100.0 32 ............................. CTTCGGGATTTTGTTCCCGCGGGTGAGGAAGC 2235076 29 96.6 32 ............................T AGATAAGTCATCCAGAGTTGACATCTCTACCG G [2235059] 2235014 29 96.6 32 A............................ TCGTAGCCGGTGAGGTTTTTACGATCCCTGAT 2234953 29 93.1 32 A.......................T.... CAAGGCGCATATACCCGGCGCGTAGGTGTGGC 2234892 29 89.7 32 .............G..C.......T.... TTCCAGGACACCGGCGATATCGACGATATGGT 2234831 29 82.8 83 ...........A..A.C..A....A.... CTATAACCGAGATACCGGGAATCGAACCTCTATTGTGTGTTGATCTACCATAGTCGTCTCCATGGGCTAAGCTCGTAACGAGC 2234719 29 69.0 0 GGT....A...CA...C.T......G... | ========== ====== ====== ====== ============================= =================================================================================== ================== 24 29 96.6 34 CTCTTCCCCGCGCAGGTGGGGGTAGTTCC # Left flank : AAATCTGCTGAACTAGGTGTGCTTTCCGCCTAGATCTCAGCATCGTTGAGAAAGCCACTGGTGAGTACGTTTGCTACGGGCGTGCTCGCGACACCAACATAGATAGGTTCGTCAGGGCCTGGTTCGTGTGGAACCCTGGAGCCGAAAACAACTACCAACGAACTGCGCCCGGAGAATACTCCTTTGGCTATCGTCGGACCCGGGTTCGATTCCCGGCATCTCCACTTATGATGAGCACCCACTCCGATTCTTCGGCGCGGGTGCTCACGTTATGTAAGCGCCTTGTCGCCACGGCCCAACTTGATAATCAGAAGCGACTCCTCGTGTCCGATAAGGACGAACAGGGCAGAATAAGCTAAATTTGAGGCGTGGGAACTGACATGAAAGCCATGCTTGGCGGGCTGGCAATGTGGAGGCGTCTCGCGGAGAACCACAAAGCTGGAACTCTGTTCCAGCTTGTTTTTCGGGCCCGCCGCGAATAAACGACCAGGTCAGGCAGT # Right flank : CCTGCTTAGGACCGCCTTCCCCGCGTGAGCGGGAGTAGCAGCACGTTTCCGATTGCGTATTCTCCCACATGTTTAGCTTCAGGCTCGCGGGGAGAAACACACTTATAAACACAGGTGAAATATGTTGATACTCGTATCTTCTTCCGTCAATCTCGTTTCATTTCAATGAGGGAGAAGCATGGACAATATCAATGCTTTGACGGATATTCCGTTACTTGTTACTACGCGCGGGCGATTATCAGTTCGCGATGCACTTCTCAATGCTCATATTCGAAAAGATCCCCCTAACGAAAAAAAGGACTACGAACCGCTGGTTGAACCGGCAGTCGAACCAACAGGTGAACCAGTAGTCCTAGATAAGACTGTTCCGGGCTACGTGTACGGTGCGCAGCTGAGGTTGATGGCGGCGGTTACCGCCGTGGCTGTGAGGCTTTCCAAGCGCACTCACCGGGATCCGTTCCGGATCGAAGAGCAATCCATTCTTTCGGAAGGGCTTGAAC # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCAGGTGGGGGTAGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //