Array 1 3719103-3715289 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051320.1 Salmonella enterica subsp. enterica serovar Muenster strain CVM 34526 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3719102 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 3719041 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 3718980 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 3718919 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 3718858 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 3718797 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 3718736 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 3718675 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 3718614 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 3718553 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 3718492 29 100.0 32 ............................. TATGACTAATGCACAGTTAAAACGGGTATGGG 3718431 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 3718369 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 3718308 29 100.0 32 ............................. TCAGCGCCGGCGATCGGGCCGCCGATTTTGTC 3718247 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 3718186 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 3718125 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 3718064 29 100.0 32 ............................. CTCGCGCATTGTCTTTTGATCCCATAGCGTAT 3718003 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 3717942 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 3717881 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 3717820 29 100.0 32 ............................. GCGATCTTAAATTTGCCGCCGCGTAATTTTTG 3717759 29 100.0 32 ............................. CGCCCACCCTGAGTATTATCACTACTCCGGAC 3717698 29 100.0 33 ............................. CCAGCGAGCGCTGGCTTCAGGATGGGGTTAGGC 3717636 29 100.0 32 ............................. GGGCCAATAAATGACGCTAAAACGCGCATATA 3717575 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 3717514 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 3717453 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 3717392 29 100.0 32 ............................. CGATTGTCCAGATCACATAAATTTGTATAAAA 3717331 29 100.0 32 ............................. CAAATGGATTAGTGATAGCCTCCTTTTATTAT 3717270 29 100.0 32 ............................. CATTTTCTCGCACTCTGTCTTGGTCAGCTTCT 3717209 29 100.0 32 ............................. CCCATTGAGCACATGCACGTTGCCGGGTTAAA 3717148 29 100.0 32 ............................. CGGCCCGCGTTGGTTATGAAGAAAAGCACTAC 3717087 29 100.0 32 ............................. CGCACGATTCCATCACCTAAAAACGACCACTT 3717026 29 100.0 33 ............................. CAAAATTTTAACGGCCATGACCAGGCAGGGATT 3716964 29 100.0 32 ............................. TTGTCGCGCCTGGTATGTGGTGAGATTTGCAA 3716903 29 100.0 32 ............................. TTTGGAAACCATGCCTGATCGCCAATATCTGA 3716842 29 100.0 32 ............................. ATTAAATATTCCGCGCGCATTCAGGTACCCGG 3716781 29 100.0 32 ............................. GGGAATGCCCCATTTGCAAGCGTCGCGGAAAA 3716720 29 100.0 32 ............................. CTTGTTTCTTCTAATCTCTTTTCGCGTTGGTA 3716659 29 100.0 32 ............................. ACATAAACGCACGCGCGGGGATCCGAATTTTT 3716598 29 100.0 32 ............................. GTGAACGCGCAGAATATAGATGGGGACATTAC 3716537 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 3716476 29 100.0 32 ............................. TATTTTTGCGGGATCAATGTCGGCTCGAGCAC 3716415 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 3716354 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 3716293 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 3716232 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 3716171 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 3716109 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 3716048 29 100.0 32 ............................. TTGGCAATTGACAGTTTGCTGGATGTGGACAC 3715987 29 100.0 32 ............................. ATATCCAGCGGGGTTTTATGCTGTCGGTAGAG 3715926 29 100.0 32 ............................. AGTTATTCCCGGTGTTGTCTGCGAAACAACAC 3715865 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 3715804 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 3715743 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 3715682 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 3715621 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 3715560 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 3715499 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 3715438 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 3715377 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 3715316 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 63 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3738650-3736975 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051320.1 Salmonella enterica subsp. enterica serovar Muenster strain CVM 34526 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3738649 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 3738588 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 3738527 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 3738466 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 3738405 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 3738344 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 3738283 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 3738222 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 3738161 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 3738100 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 3738039 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 3737978 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 3737917 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 3737856 29 100.0 32 ............................. CGCCCCTACAATACATCCTGATACAACAACCG 3737795 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 3737734 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 3737673 29 96.6 32 ............................T GACTCATACTCGTCTGCGCCCTGCGCGCAAAA 3737612 29 100.0 32 ............................. GCTAATTTATAAATCAAGTTAAAGCTTGATTA 3737551 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 3737490 29 100.0 32 ............................. TCTACGGGCGCACAGCGAAAACTACCGAGGAG 3737429 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 3737368 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 3737307 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 3737246 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 3737185 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 3737124 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 3737063 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 3737002 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAATAGCGTTGACACGTTCCAGACTTAAATCCGGAGAACGTGATGATGACTGAGTTCAAACGCACCCAACGCGATTATCCTCTATCCTTTAAAATAGCCGTCGTTGAGCAGGTCGAAAAAGGCGAGATGACCTATAAACAGGCCCAGCAGCGATATGGCATTCAGGGGCGCTCCACCGTACTTGTCTGGCTGCGTAAATATGGCCGGCTTGACTGGAGACCCGGACTTCCTGACCTGGTGAAGAGGAAACTGCCTGTGGCTCAGACAACTATCCCGCTGACACCCGAGCAAAGAATCAGGGAACTTGAAGAACAGCTTGAGCTGGCAAACCAGAAAGCTGAGTTTTTTGAGTGCGTTATCAACGTCCTGAAAAATGATTACGGGGTAAGTGTTGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //