Array 1 1267-2087 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOPN01000114.1 Frankia sp. B2 Contig_114_length_2087_cov_68.202551, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1267 29 100.0 32 ............................. GTGAGCGTGCCGTGCGCGCCGAGACCGAACGC 1328 29 100.0 32 ............................. TTTCCCGGCAGGCGGTTCGCGTAGGACCAGGC 1389 29 96.6 32 ............................G CAGCCACCTGCGCCGGAGTCCGGGCCGCCCAC 1450 29 93.1 32 ..................T.........G CGATCGTGCTTGCCGGCCGGGGCGGTGCGTGC 1511 29 100.0 32 ............................. CCGTCGTCGCTGACCGCGCCCAACTTCGCGGC 1572 29 100.0 32 ............................. CGTGCCCGTTCCCGGGCGATCCGCGCGCGCAT 1633 29 96.6 32 ............................T CTCGCCATCCAGAAAGTTGCCGGTTCCAGAGG 1694 29 96.6 32 ............................T GCGCCGCGATGCGGCATGAGCGGCTTGTCGTC 1755 29 100.0 32 ............................. CTACACCATGGACGACGTCAACGCTATGGCTG 1816 29 96.6 32 ............................T TCGGGTGAAGAAAGCCGCGCGCAATCGCATTC 1877 29 100.0 32 ............................. CTCAGATGAGGTGGGAAAGCTTGCCTTCGCGG 1938 29 96.6 32 ............................G GGATCTGGCCCCGGTGCCGGCCGGAGGGAGGG 1999 29 100.0 32 ............................. CCCCACCCCTGTTTTCGAGGAGACCCCACGAT 2060 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.0 32 GTCGTCCCCGCACGCGCGGGGATCTTCCC # Left flank : GCGAGCTGCTCGTAGCGTTCACCCTTGCGGAGGTGGACGAGCACCAGGAGTGCCTGCTCGGGTGGGGGCAGCTTGCGCCAGGTCCGACGCTGGGCGCGGTCCTCGGCCAGCAGCCCCGCGAGGAAGGTCAGGGTCGACTCGGGCAGGTCGACGACACCAGGGTAGGTTAGCAACGGAAGTCCTCGGTCAAGGGCACAGTGGGGTAGACACCCTGTGATCTACCGGGGACTTCTCTATTTACGGCACCCCTCCGGCCACCGCCCGAACAACTATCGCCGCCGCCAGATGACGGAACGACCGGAACCAGTGCCCGTTCAATTCGTCAATTGGTGATCCTCAACGGCCGAAAGAATCAGACAAACAGAGATTGAAAAGGCTCAATGTAAGTACCACCAAACAAACCCCCAAGGCCGCAGGTTTTTCAACGGGATCACCGGCAGGCCGGCCCGTTCCGCCAGTCGTTTGAACCGTTGCGACACCGAGTCGGGGTGGCATGGCCG # Right flank : | # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGATCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10619-11735 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOPN01000074.1 Frankia sp. B2 Contig_74_length_12254_cov_42.627196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 10619 37 100.0 37 ..................................... CACCGGCCGCAGCTACAGCGCCCAACGCTTGCCGCCG 10693 37 100.0 34 ..................................... GGAATACATCGAGCGCCTTTCCGATAGGGGCGTT 10764 37 100.0 35 ..................................... CGCTGGATGATGACCTCGACCTCAAGCGGGAGATC 10836 37 100.0 34 ..................................... CTCCCCCGAAATAGAAATCACCGTCGGGCTCGAT 10907 37 100.0 35 ..................................... CTCGCGGGCCACACGCCGCGCCTCGTCCGACGTGG 10979 37 100.0 35 ..................................... AGCCAGCGGACGAGCAGCTCACGGGAGGCGGACAC 11051 37 100.0 35 ..................................... AGCCAGCGGACGAGCAGCTCACGGGAGGCGGACAC 11123 37 100.0 35 ..................................... GGTTGCCGCGGCGAAAGCTCGCCGGGCCGAGCGAG 11195 37 100.0 34 ..................................... CAGAGCACGACGCAACAGGTGGATGATCTCGCTG 11266 37 100.0 36 ..................................... TGTTTGTACGCGTACACCTTGCGGGCGAAGTCGGCG 11339 37 100.0 35 ..................................... AACCGGGAGATCGTCCTTTCCATGGAGCGATCCAT 11411 37 100.0 34 ..................................... GTCATGATCGCCGACCGGCCCCGCGAAATCCACC 11482 37 100.0 36 ..................................... GGCGTTGCGCTCGGCGAGGATCCGGGCCGTGTCCCA 11555 37 100.0 34 ..................................... CACGTTTCCAGGAGCACTCATGGTCACGACGCAG 11626 37 100.0 36 ..................................... CTCGTCCTGCAGCTGCTTCCAGGCGACCGCCAAGAC 11699 37 89.2 0 ..........................C......AGG. | ========== ====== ====== ====== ===================================== ===================================== ================== 16 37 99.3 35 GCAGCGCCGGGCGTCCGCGCCCGGCGAGGTTCCCAAC # Left flank : CCCTGCTCCAGGCCAGGATCCTCGCCCGACACCTCCGCGGCGACATCCCCCGGTACATCCCCTGGAGCCCTACCTGATGGACCTCCTCGTCACCTACGACGTAGACACCACCACCCCCGACGGCAACCGCCGCCTCCGTAAAGTCGCGAAAATCTGCGAAGGCCATGGCATCCGCGTGCAGAAATCCGTCTTCGAAATCGTCTGCACCGAACCCCAGCGCGTTCTCCTCGAACACAAAATCAGTCAGGTCATCGACGAGACCCTCGACAGCATCCGGATCTACCAGATGCCCCAGCACACCCTCGACAACGTCCACCACCTCGGCGCAGGCGTCCAACCCGTCCACCGCGCCGACCACATCATCTGACCGCCTCGGAACCCCAAGCACCTCCCCGACACCAGGCACCTCCCTAAGCCAGAAAGCACACAAAACGGTCAGAGACCCGGCCATAACAGTGACACTGGATCTTCTTCTACGAAGAACTCCCTGCTCAGACAGG # Right flank : CGTCGGCGGCGGGCCGTCGGGGGTCCATTTCCCACCGAGGACGATGCGCAGAAGGCGCTGATGGCCTCGTTAGCGGAGCTTCACGGCGGCGACTGGCTGGAAGAGGCCTGACTCGAACCCACGACCGACGGATTATGAGATCATCGGCAGCCTGTTCGCCGGTCTCCATGGACGTCCGCCGGTCCTGATCACAGGTACACCCGGTCGCCCCGCCGCTTCTTGATGATCGACGCCACAATATGGACAATACACCCTTTGAAGCCATAATCGCACCGATCTGGCCACGCAACGGTGCAGGTCGACCGGCGTACACCAGATCGTCGATCATAGCCAAAGAGGATAAGTTATTCGCCAGCTAGGAAACTCAGGCTAGTCCAGAACATCCGCCGCGGCTACTAATGGGAATGAAAGTATCTGGACAAAGTGCAACTCGGCATGATTTAATCATTGCATGCGGAAGCCCGACGGTCGGAAAATTGACCACGGAACACTGGAAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCGGGCGTCCGCGCCCGGCGAGGTTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.40,-18.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 2124-720 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOPN01000032.1 Frankia sp. B2 Contig_32_length_54893_cov_57.196290, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================= ================== 2123 37 100.0 34 ..................................... AACCCGGGCATGTCCTCAACCCGCAGGCCGCCGG 2052 37 100.0 36 ..................................... CTCATCGATGGTGTAGCGGATCCGCCAGTCACGGCC 1979 37 100.0 36 ..................................... GTCATGAACCTCTTCGGCCCTAGCTGGAGACGCCAG 1906 37 100.0 37 ..................................... ACATTCTCCGGAACGTCAAGGATGCGCATTTCCCCAA 1832 37 100.0 36 ..................................... TATGGCTGGTTCATTCCTTATAAGGGGCGCGGACGT 1759 37 100.0 35 ..................................... CATCAGCGACCAGGACGCGGCCAGCGCCGCCAGCG 1687 37 100.0 36 ..................................... TACGACTTGCAGGTCGATTCGGTGGCGTCCCGGCCG 1614 37 100.0 36 ..................................... CCCCCTCCGGGGAAGCTCAACGAGGACGAGCTGATG 1541 37 100.0 35 ..................................... TCACACCCCCCGCAAACCGTCCCCGGACCGCACTG 1469 37 100.0 38 ..................................... ATCGTCTACTGGCGGCGCACCCGCCGGCACCGGCCCGA 1394 37 100.0 35 ..................................... GCTGATTTCGGCGCGGTCCAGGAGATCCGGTCCAG 1322 37 100.0 35 ..................................... GGTCGCGCTCGCCTGGTTGATTGCGATCGCCCCAA 1250 37 100.0 36 ..................................... TCGCCGGTCGACAGCGTGACCAGGCTGGTGATCCCC 1177 37 100.0 34 ..................................... GGGACGGGTCTGCTCCGCCTGTCCGCTATGACCG 1106 37 100.0 36 ..................................... TCGTCTCGGGTTGATGTTGCCCGGCGGGAGGCGCAG 1033 37 100.0 37 ..................................... GACCGACGTGACGTGCGGCGTCGCCCACGTCGGCGGG 959 37 100.0 36 ..................................... GGGTGAGCCGACGGGACTGCACGCCGGCATGCACAG 886 37 100.0 93 ..................................... ACCCGAGGCATCGAGCCTCCCCCTCTCCTGACCAGCGAGCAGCGCCGAGGATCACAACTGAGTCACGATAAGGCACCATATCGCGACCCAGAA 756 37 78.4 0 .........G.C.C....G.C........T..C...G | ========== ====== ====== ====== ===================================== ============================================================================================= ================== 19 37 98.9 39 GCAGCGCCGAGGGACCGCCCTCGGCGAGGATCACAAC # Left flank : GACGGCACCGAAACCCTCGTCACCCTGGCAGCCCTCGTCGCCGCCCATACCCCCGGAGCGCTGAGAACCCCCGCCGCCAGCGAACCCGCCGATCCTCCCAGCCAGGCGGCCCTACCCACCCTCACCAGCCAGCCACCGGTGGCCTCCGCAAACCTGCCCCACCTCCAGGCTACCGAGGCATCCGACCTTGACTTCTGACCTCCCACACGTCGGGCTCGCCTCCGGACGGATCCGCGCTGGCCCCTTCCCGGGATCATTGATCCACCGCTCCGGACAGCGGATAGCGCCACACCGAAACCCTCGACCGTCAAACCGTGATGCTGGACCACGAACGCACGCCACCCGGGCTGATGGAACCGCCTTTTGCATGGTTCGGAACCCCAAGCACCTGCTGGCCGACCGGGACCTTCCGAACTCGAAATCACCGCAAATCGGGCGGAGACGGGGACAAGACGCTGCCATTCGATCAACCCTGTGGCTATTCTTCCTGTACAAGCAGG # Right flank : GGTGGGGTGTCCAGTCGGCTACCGCCAGCCAGCGGGCAGTGAGGGGTTCGCGCCTGGCGACGAGGTTCTCAATTCTACGGAGGCCAAGGTGATCTTCATCTATGAGTGGCAGGGCTGGACGTCCGTACTCATTGCCGTACCTGTTCCAGCGGTAACGCGGTATGAGCACTTTCTGTTACGAAAATCGTTGGCCTGGTGTCGCGCTGGTGATGCCGAGGCGATGCCAAACTGACCGGCACTGGCCGGTACCGACTGGCGGAGGCAGCACTGTACGGACCGGTGAGCTGCTGGAACGGCATGGGACAGGCTGCGCTGCCACGAGTCTGCTCCCACTACGTGGGACTCATAATCCGTCGGTCGTGGGTTCGAGTCAGGCCTCTTCCAGCCAGTCGCCGCCGTGAAGCTCCGCTAACGAGGCCGTCAGCGCCTTCTGCGCATCGTCCTCGGTGGGAAATGGGCCCCTGACGGCCCGCCGCCGCGATCGCGGCAGATGCCGCCAC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCGAGGGACCGCCCTCGGCGAGGATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.20,-17.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 39-311 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOPN01000036.1 Frankia sp. B2 Contig_36_length_50027_cov_66.878056, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39 29 100.0 32 ............................. CCCCACCCCTGTTTTCGAGGAGACCCCACGAT 100 29 96.6 32 ............................G GGATCTGGCCCCGGTGCCGGCCGGAGGGAGGG 161 29 100.0 32 ............................. CCCCACCCCTGTTTTCGAGGAGACCCCACGAT 222 29 100.0 32 ............................. ATCCAGGAAGGAGCAGACCGTGACCGTCGAGC 283 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTCGTCCCCGCACGCGCGGGGATCTTCCC # Left flank : CTTCCGGGATCTGGCCCCGGTGCCGGCCGGAGGGAGGGG # Right flank : GGTGAGCAGGGGAGCCGGGTCAGTCGCTCTCGACGAGGACCACCTCGGAGGGGATGTTGCCCCGGGTGGCCACGGAGTATGGGCACAGGGCGTGCGCGGCCTCCAGAATCTCCTGGGCGCTCGCCCGCTCGATGCCGGGGATCTGTGCCTCGATCCGCGTACTCAGCCCCAGGCTGCCGTTGTCGTTCCTGATCAGCCCGACGGTCACGGAGACCGCCGAGTCCTTGATATCGATCTTCTTCTCGCGCGCGATGGCCTTGAGCGCGCCATGGAAGCACGCCGCGTAACCGGTGGCGAACAACTGTTCCGGGTTCGTGCCCGGTCCGTCGTCACCACCGAGGCCCTTCGGGGCGGAGAGCTGGAGGTCGACCCGGTTGTCGCTGGACACCACCCGTCCGTCGCGTCCACCCCAGGCGGTCGAGGTGGCGGAGTAGATCGTGTTCGCCATGGTTGCCTCCGTGCATCAGGTGTTGCCGAAGCTCCGGAGAGCCTGTGACATT # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGATCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [13.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11088-11249 **** Predicted by CRISPRDetect 2.4 *** >NZ_SOPN01000047.1 Frankia sp. B2 Contig_47_length_35152_cov_74.585153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 11088 30 100.0 36 .............................. GGTTGTGTCCGACTGTTGGATATCGAGGACAGGCGG 11154 30 100.0 36 .............................. ACCGGTACCACCGCGGCCGGTCCGGCACATCAAGAT 11220 30 83.3 0 .......................C..TGGT | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 94.4 36 GTCGCTGATCATCCCTGGAGGGATCGCAAC # Left flank : GGCGGGCCGTGCTGCACGTCTGCTCGGCGGTCGCCGGCACGTCCGTCCTGGACCTCGGGTAGCGACCGGGGGGCGGAAGTCGGCGGCCCATGGTGGGGGCGAGCTCCGCGGCCAGATCGGCGAGGGGCGCACGGAAGATCATGGTCAGGGCGGGATGGGAACAGCAGGCCGCACGGCCCAGGCCCGCGTCACACCTGGGCGCACTCGTGCGGCCCTTCTCATGTCCCGCGGGCCACTCGTCCCGTCCGATCCCCAAGTCCCGTCCGATCCCCAAGTCCCACCCGATCCTCAGGCCGTTGACAGCGTCCACGTCTGCCGCATCCCGGATTTTGTCGAGACGGAGTGGCTCGGCGTCGCAATGGGCAGCCGGAGCTCGATGCTCATGGCTGTCGATCATGGCTCTGACCTGGGCCGTTGCACTACCGCCGGATCGCTGCAGAATCGGCCCACGATCCACCGCCGATCATGCCTTCAACCTGCGACTTTACTTTCGGGGTCGG # Right flank : TGGGGGGCACGGCGGGCCGGTGATGGTGGGATCATGACGGTGAGCCTCAGGGACGGGAGAAGACTGTGATGTCCGAGGAAACCGCCGATCCGTCAGGTGAGCCCGCGGCCGAGCGTGAACCGGGGGCGCGGTCGCCAGCCGGTCGGGAACCGTCCGGGCAGCCGGCGCCCGATGCCGAGCCGGGGCCGGACGCCGACGCGGGGGCGGATGAGGCTGGGGCGACGTTTGCGGGCAGGTTCGACTTCCGTCCGGTCGACTGGGACGGCTCGTTCAGCAGGGTGTGGAGGGCGCGGCATGGCCAGGAGCTGACGAATGAGCTTGCCGCCGAACAGGAGCGGCGGGAGAACCAGAAGCGGATCGAGGAGTACTGGCGGGAAGCACGGGAGCAGATGAACGCCGAGTTGGCCCGGGAGGCGGTACGGCGCCGGGCGGAGGAGCGCGAGCGGACGGCGGAGGGCGGGCGGCCGGCGCGGGGGGCGGCGGACGAGGCGCTGCTCCGC # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGATCATCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //