Array 1 42133-44726 **** Predicted by CRISPRDetect 2.4 *** >NC_016787.1 Corynebacterium diphtheriae HC03, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 42133 29 96.6 32 ............................G AAGATTGACCGTCTATCCGAGGCTGTACAAAA 42194 29 96.6 32 ............................G TGCTTGTAGGCGGGTGACATCGCCGCGAAACG 42255 29 96.6 32 ............................G CACCCGCAAACTTTGACCAGACCGGCACCCTC 42316 29 100.0 32 ............................. GGGATTAAATCTAGGCGACTTTGTGCAGGTGG 42377 29 100.0 32 ............................. ATTGGCTTAACTCTCAACCTATGGAGTTCCTG 42438 29 100.0 33 ............................. ATTGGCTTAACTCTCAACCTATGGAGTTCCTGG 42500 29 93.1 32 T....T....................... GCCGCGTTTCCAACGACCAATCACCAGCCGCT 42561 29 96.6 32 ............................G AATGCCGGAAAAGAAGCCGATTTTGTTTACAC 42622 29 100.0 32 ............................. AGGGCATTGGAGCTATGCGCTCCATCGGCGCC 42683 29 100.0 32 ............................. ATGACGGATGAGCAGTACCAAGCCGCTACTGC 42744 29 100.0 31 ............................. GACACGGGCTATGACACCCTCTGGGACACAG 42804 29 96.6 32 ............................A GCTTCGGAGAGTCCGCAAAATCATGAGTAATA 42865 29 100.0 32 ............................. CTGAAGTGCACCGCATGCCCCGTCGCTCACCT 42926 29 96.6 32 ............................A CACCCTCGGTGGTAGTGGGTTCCCCACAGCAC 42987 29 100.0 32 ............................. ACCCTCACGGCGGTGACGGGTGCGACTGAGAA 43048 29 96.6 32 ............................G CAGCAGATCATGCTATCCATGCTGCGTGACCT 43109 29 100.0 32 ............................. GATGACCGCGGCCTTGTGCAGGTCAAGATTAG 43170 29 96.6 32 ............................G CATTCGAGGCTGCCGCCTAAGCCCCCAGCATG 43231 29 96.6 32 ............................G CACACCGAAACCGCTTATTTATCGGGTAAGAA 43292 29 100.0 32 ............................. ACGGGATTTGCGCGCCGTTCAGGAGCTTCTAG 43353 29 96.6 32 .....T....................... CCGCTGCGATTCGACCCCGCTGCCTTGCTTGC 43414 29 100.0 32 ............................. CAGTTTTCACACCCCGAGTGTTCCACCGAGGT 43475 29 96.6 32 ............................T CATCCCGCAGGGTGAGGGAATCAAGCGAGGAA 43536 29 96.6 32 ............................G CTGAGCTGGATGCCGTGGAGGGCATCCAGGAG 43597 29 100.0 32 ............................. CGCCTTGGGATAGTTTGATGGTGGGGCCACGA 43658 29 100.0 32 ............................. TTTCCGCAGGCCGTTACGTTCCACGGCGATAA 43719 29 96.6 32 ............................G AATTTGTGGGCGCGGCGTTTCGTGAGGCTCCG 43780 29 100.0 32 ............................. CACCACGCCGCACAGGTCGCTGGCTGTATGCG 43841 29 96.6 32 ............................G CTTCTGATCTTGCGGCGCTACGCCTACGGGTG 43902 29 100.0 32 ............................. CCGCGAGTCTATGTCAAAAGCAAAATTGATGC 43963 29 100.0 32 ............................. CGGCAATTACAAATGTGTTAGTTTTTCCAGCT 44024 29 96.6 32 ............................G TATGAAACCTTTGCAGACCTGTTCACGACGCA 44085 29 100.0 32 ............................. CAGCAACCCGTCCCCAGATCGACCGCTGTCGT 44146 29 96.6 32 ............................G AAAACCAATACTCCTACAGCTGGAACGACCAA 44207 29 96.6 33 ............................G ACCACGGGGGATAGTGCCTCAGCTGCGAGTACT 44269 29 96.6 32 ............................G CGTCTAAATCCGATCCAATTCTTGTGCTTTCC G [44290] 44331 29 96.6 32 ............................G TGTGACGCCGGTAAAAATGCCGATGGCGATAC G [44352] 44393 29 100.0 32 ............................. GACAATACCGAAGGGGTTTAATAACATCGTTG 44454 29 100.0 32 ............................. AAGACGCCCCACATCATCTGTTTTTCCGAGGC 44515 29 100.0 32 ............................. ATTGTGCACAATTCTTGAACTAATGGAGGAAT 44576 29 96.6 32 ............................G AAAACCAATACTCCTACAGCTGGAACGACCAA 44637 29 89.7 32 .............T.............TG TTGTTAACGGATCCACGAGACACACCCAGTAT 44698 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================= ================== 43 29 97.9 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAAAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAAGACTAAGCAAATTTGGGTGAATAGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGTCTCTAAACATGCAGCTTGATAAGA # Right flank : CAGGGACTTTGAGAACTGGACCGCCGTGATTCCCTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGAATCTGTGTTTTTCATTCAGAGAAATCAGTAAATGATGGCTCTACTAAAAAATTTTGAAAAAACTAACTTTTAATATCTATAGAGTGTATTCTGTGGAAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGATGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.67, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //