Array 1 1976440-1974486 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRQZ010000001.1 Enterobacter roggenkampii strain MGH239 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================== ================== 1976439 28 100.0 32 ............................ AGTTCCACCTCCGTAACAGCTGATGAATTGAT 1976379 28 100.0 33 ............................ ACAAAGAAGGGGTGTTGTGCTGGAAGCGATCAA 1976318 28 100.0 32 ............................ GTATCAACAAAACCACCTGATGAATCTAGAGG 1976258 28 100.0 32 ............................ GCGTGGCCATCCACGGATCATTCAAAGAGAAC 1976198 28 100.0 32 ............................ TCAGGCATATTACAAATATGCACTCTATCTAT 1976138 28 100.0 32 ............................ ATTAGAATATTTCAAACGAGGGAATTTCCCCG 1976078 28 100.0 32 ............................ GCCTCCAGCTCCGTGACGTTGTGCTCACGCAT 1976018 28 100.0 32 ............................ GTCATCAGGGCGTTCGCTGTGTCCTGCAATGC 1975958 28 100.0 32 ............................ GAAATAGGGTCGGCCACGGCGGCCTGTCGCGC 1975898 28 100.0 32 ............................ AGCTTGTGGCGCAGCATTACCCACAATATGCC 1975838 28 100.0 32 ............................ TGGGTAACTCCTCCGAAGCAGGGATCCGCCAG 1975778 28 100.0 32 ............................ ATCTTGATCAATGCCTCAGTAAAAACTACTGT 1975718 28 100.0 32 ............................ CAAACTCCGCAATTTGTTTTTCTGTCAATGGG 1975658 28 100.0 33 ............................ ATAACATTAAGAGATGTTCCGGCAGCAGTACCG 1975597 28 100.0 32 ............................ ACCAGCCGCGCTTCACCAGCATCGGCTCCAGC 1975537 28 100.0 32 ............................ GTACTCGATACCCTCAAAACCGAATTTAAGCT 1975477 28 96.4 94 ....T....................... GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 1975355 28 75.0 32 NNNNNNN..................... GTGTCCTGGACATCATCGCCACGATGACAAAC 1975295 28 100.0 33 ............................ CACCAAATCCCGTATTAATTCCACATAATCTAT 1975234 28 100.0 32 ............................ TGAAACAGTATCGCGTATGTCATAACCCGTAT 1975174 28 100.0 32 ............................ TGCTGGCGCAGACAACTGCGGAATTAAATAAT 1975114 28 100.0 32 ............................ TCTCTGATTTCACCGCTCAAAGTGAAAAAGCA 1975054 28 100.0 32 ............................ GTGGCGGCTTCCGAATTTAACGGGGTCTTAAC 1974994 28 100.0 32 ............................ TTGCCTCTGCTAATGCTGTTCGTGCTAATTAT 1974934 28 100.0 32 ............................ GGCATCAGCAATTACGCCATGGTAGTCATCAG 1974874 28 100.0 32 ............................ TTGCTCAACCAGATTAAGGGCGAGCTGGCTGG 1974814 28 100.0 32 ............................ GCGCGAAAGCGATGATTTTGAAAGTAGCGATG 1974754 28 100.0 32 ............................ ACGCGTCCGAGTATTGGACGTTCCCATCACAA 1974694 28 100.0 32 ............................ CGGTTCGTTGCCGTCGATGCTGACATGCTGAT 1974634 28 100.0 32 ............................ TGTTTAAATGAACCAATACACTGAAAGCATGA 1974574 28 100.0 33 ............................ TTCATCCAACAGGCGCAGGATAAGCTCAACCAG 1974513 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================== ================== 32 28 99.1 34 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCGTACAGGCAGCTTAGAAAAACCAGAACCAATACCACCAAGATCCACCAGT # Right flank : GCCAGCGGTCGGATAATTGAGCTGGCCAGACTGTGCACTGCCGTGTTACCAACGGTGCAAAACTGATCCACCCCAGCGGTTGAAAATTGATCCAGGGGTTAATCTGCTCCTCTGAATACAGGGGAGCTTATGATCACTTTTGAGATTCGTATGGAAATTAAAGTCCTGCACAAGCGGGGAATGAGTATCCGGGCCATTGCCAGGGAGCTGGGTATTTCGCGCAATACTGTCCGCAGCCACCTGAAAGCCAAATCTGAAAAGCCGCAGTATTCACCACGCCCGGCACCATCATCACTGCTCGATGAATACCGTGATTACATCTCTAAGCGGATCAGCGATGCGCATCCCTACAAAATCCCGGCGACCGTTATTGCCAGGGAAATCATGGAGCTGGGCTATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1983320-1982511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRQZ010000001.1 Enterobacter roggenkampii strain MGH239 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1983319 28 100.0 32 ............................ CTGCTTGACGCTCTGCACATCCTGGTCAATCT 1983259 28 100.0 32 ............................ GTGTCCTGGACATCATCGCCACGATGACAAAC 1983199 28 100.0 33 ............................ CACCAAATCCCGTATTAATTCCACATAATCTAT 1983138 28 100.0 32 ............................ TGAAACAGTATCGCGTATGTCATAACCCGTAT 1983078 28 100.0 32 ............................ TGCTGGCGCAGACAACTGCGGAATTAAATAAT 1983018 28 100.0 32 ............................ TCTCTGATTTCACCGCTCAAAGTGAAAAAGCA 1982958 28 100.0 32 ............................ GTGGCGGCTTCCGAATTTAACGGGGTCTTAAC 1982898 28 100.0 32 ............................ TTGCCTCTGCTAATGCTGTTCGTGCTAATTAT 1982838 28 100.0 32 ............................ GGCATCAGCAATTACGCCATGGTAGTCATCAG 1982778 28 100.0 32 ............................ TTGCTCAACCAGATTAAGGGCGAGCTGGCTGG 1982718 28 100.0 32 ............................ GCGCGAAAGCGATGATTTTGAAAGTAGCGATG 1982658 28 100.0 32 ............................ ACGCGTCCGAGTATTGGACGTTCCCATCACAA 1982598 28 100.0 32 ............................ CGGTTCGTTGCCGTCGATGCTGACATGCTGAT 1982538 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AACGGGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACACTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTCACCTCCTGAGTAATGTCATTTGTCATGGGTAAGTATAGCCATTTGTCATGGTGGATGGAATCGGTGTTTTTGTGAGGGGGATTGATGCGAAGAAAGGTGTTTTGACCCTAATTTTTGGCGTTTGTGTAATTTATTGATTTTAAATGAGTATTCTTGGTGGGTAAAAAAGAGGGTTAGAGAGGGTTTTTTAGCTTTTTTTGTATGCAAATCAGAAGGGTGTGGGGATATTATTTCA # Right flank : TGTTTAAATGAACCAATACACTGAAAGCATGAGTGCACTGCCGTACAGGCAGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1993868-1992816 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRQZ010000001.1 Enterobacter roggenkampii strain MGH239 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1993867 28 100.0 32 ............................ TACCGTATCAAGCACCAGCGCACCGTCGGCAT 1993807 28 100.0 32 ............................ TGAATATTGTTCACGCGCGTCCTGATGCCGCT 1993747 28 100.0 32 ............................ GATAAATCTGCTGAACAATTCGGGGTTCACGC 1993687 28 100.0 32 ............................ TCGTTAAGCAGCTGCATGGCGTTCGGCATGTC 1993627 28 100.0 32 ............................ GAAAAACTTCCAGCCTGAGAACGTCTACAACA 1993567 28 100.0 32 ............................ GAGCAGAAGCTACGCGCTAAAGCCCTTGCGCA 1993507 28 100.0 32 ............................ ATTGTCGCAGGCTTTTCTTTTGAGTCGGCTGC 1993447 28 100.0 32 ............................ AGACTACGGATGCGCCAAAGAAATCCGAAGAC 1993387 28 100.0 32 ............................ GTCACTCCCCGAACTGATTACACAAATCCGCA 1993327 28 100.0 33 ............................ AGGGAACTGGCGTAAACGTCCAGACGTCGGTGT 1993266 28 96.4 32 ..G......................... GTCTGGGTTCGCGCCTGACCGCCGTAGCTAAG 1993206 28 100.0 33 ............................ GACAATTTTGCGACTGTAGACGTCCTGCCAGAA 1993145 28 100.0 32 ............................ TTAACTATTGCACTCTGCAGCTGCGTCTGTTG 1993085 28 100.0 34 ............................ GCCGCACGAAAGCGAAGCTGGCCAGCCTGCAAAA 1993023 28 96.4 32 ...............T............ TGGCGCCTCCGTGCCGGTGGCGCTCCGCGCTT 1992963 28 100.0 32 ............................ CGCACTTATGGCGAGTGGTAAAGATTGAAAGG 1992903 28 89.3 32 .........T.....A....G....... AATGAGCAACATCGACAAACAGGCGCTACACA 1992843 28 78.6 0 ...........C.........AC.ACT. | ========== ====== ====== ====== ============================ ================================== ================== 18 28 97.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CACTCCCACAAACGCAGCCCGTATGTCGTTGCCTCGGGGCTTATCTGGAAGAGGTAAAATCCGGCCTCACAGAATCCATGCGTGATTTTCAGATAGTGGAATTTGAGGACGAATCGGAACCACCGCAACAAAAGGAATGGCTGCTGGAAGATACAAAAACAAAGTGTGACTACTGTCGGGCGTTAAACCATGTACTAATGGTGTCGCAGTTTGACCGCGATATGCTGCCGCACCTGACGGGGTTGCTGCATGACATTACGCATTCAATGGCCGCGGATGTCGTTGCGCCTCAACGTGCAGAAACGATAGTTCACATTATTTCCTGAATGTAATTCGTAGTGTCGGGGAAAGACTACTGACGCCACTGGCTTGACCTTTTTTTGATGATTACGTAACCTTTTGATTTATATAATGCGAATTTACGTTCCAGAAAAAAGGGTTTTATGCGGGAAAGTTGATTATTTTCTTTTCTAACAATAAGATGGCGTGGTTTCCTTTCA # Right flank : AAAACAACTCTCTAAAACATTCAGCTTACCTATTTAAAACTTAATACGATCAAACCCACATTCTTTATTTTCCGCAATAAATAAAAAATTCATTCACATACCAATTATATTCCAATGAATATATTGTTCGTAAAAATAATGCATTAAATGGAAAAGTGATTTTTCACTTTATTATCACGGTAATTACTCTTCATTTGATACCCGTCACATTTGTTTTCATCTTATCTTCGATAACATACCGCGCATTCAACACCTTGAAATAAAAGCCCTTGCTATGTCCGTAAACAGCATCACTCCAACAGACTTAAAAACCATCCTGCATTCAAAACGCGCCAATATTTATTACCTGGAAAAATGTCGCATCCAGGTGAATGGTGGGCGTGTTGAATATGTCACCCAGGAAGGCAAGGAGTCGTTTTACTGGAATATTCCCATCGCGAATACCACGGCAGTGATGCTGGGAATGGGAACATCCGTTACACAAATGGCAATGCGGGAGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 2008938-2008729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRQZ010000001.1 Enterobacter roggenkampii strain MGH239 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2008937 28 100.0 32 ............................ ATGTTGTTTTGTGCCGTCTGCCCGAACGTGTT 2008877 28 100.0 32 ............................ TTACAACGTGATCGCATGGCGCAGAGTGACCG 2008817 28 100.0 33 ............................ TAAACATGCGGCCATCGTCGTCAGCGCGCTTTA 2008756 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGGTTGCATAAGCTGTTTGGTGGGGTGGGCTTTATCAGCGGTATGCTGGTGGAGAAAGGGCTGCCGGGGTTTATTGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCGCCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCGTGGCTGATGGTGGGATTGGATGAGACATTCGCGCTCGACAAGGTCGGGGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTATCGGCTCGCTGGCGGTGGCGTTTTTAGGGGCAGGGCGGTTTGCGCTGGGGAAAACACCTGCGTGGCGGTAGGGGTTGGAATCTGTTCCGAGGGAAGGGGTCTACGGACCCTTTTTTATTGGTGAGTTTTAAGTTGTTGATTTCACAACGGTGAATTGTTGGTGGGGAAAAAAGGGTTTACGGAGAATTTTAGGGGGATTTCTTTATATCACAAGAAGATAGGTGTAGATTGTTCCA # Right flank : GCACTTCAGCCGGGTAAGCGTCGGTGGTTAGGGTCCAATGCCGAACAGGCAGTAGGCACAACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGAACGAGCGTTTATTGTTTATGCAAGGACCAGATCGCCCTGCGGATGGCACGAGCATGCCAGCACGTAACCCTCGGCAATCTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTATACTCCCCGGAAACCACCTTTGTTTTACAGCAGCCGCACACCCCGGCACGGCAGGCCGCCGCCACCGGCACGTTGTTGCTTTCCAGCGCCTCCAGCAGCGTCGTGCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAGCGGGTCACGCCGAGCGCTTTCACCTCTTTCTCGACGATATCCATGTA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //