Array 1 8098-8920 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLMU01000068.1 Escherichia coli strain MOD1-EC5522 MOD1-EC5522_68_length_19342_cov_42.7501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8098 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 8159 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 8220 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 8281 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 8342 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 8403 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 8464 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 8525 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 8587 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 8648 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 8709 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 8770 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 8831 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 8892 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2718-1286 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLMU01000036.1 Escherichia coli strain MOD1-EC5522 MOD1-EC5522_36_length_46510_cov_39.9181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2717 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 2656 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 2595 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 2534 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 2473 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 2412 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 2351 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 2290 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 2229 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 2168 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 2107 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 2046 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 1985 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 1924 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 1863 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 1802 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 1741 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 1680 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1619 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1558 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 1497 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1436 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1375 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1314 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //