Array 1 17007-21628 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPL01000042.1 Methanosarcina mazei strain 3.F.T.2.1 scaffold49_1_size29560-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 17007 37 100.0 35 ..................................... TTCTTCTCAAACTCTGAAATGACCTTAACGGGAGT 17079 37 100.0 37 ..................................... CGATTCTAACGGCTGTATATGCTGTCATTTCAAGAAT 17153 37 100.0 35 ..................................... TAGTATTTACTGTTGTTATCAGTAAAAGCATTAAA 17225 37 100.0 36 ..................................... GTCGTTGAATTAGTCCATTCTTTGATTAGAGTTTCG 17298 37 100.0 37 ..................................... AAATATGTTTCGCGGCTGCATAGAATGAGTGAGCCCC 17372 37 100.0 36 ..................................... ACATCTTCCGCGAAGTATATTTCTATAAGTTTTGAC 17445 37 100.0 32 ..................................... ACTATTGCGCGGTATCCAGAACTCGCCGAAGT 17514 37 100.0 36 ..................................... AAATATAATGAGTCCCATAATAATTTACATAACTTC 17587 37 100.0 37 ..................................... TCCGTTATGCGAAAGAGACTCAAACCTTCTGTGCAGT 17661 37 100.0 36 ..................................... TATAGAAGAATGCGAGGGACGCTTAGAGGATATTGA 17734 37 100.0 36 ..................................... ACACTTTTAAAACCGCAGAAGAACAGCTTAAAACAC 17807 37 100.0 36 ..................................... TCATAAGCCTCTAGTTTTATTTCCATAGCATTTATT 17880 37 100.0 36 ..................................... AATCAAATAGCATATTCAGCAGATGGGAAAACCTGG 17953 37 100.0 35 ..................................... TTCCATGTTTTATATCAGGATTCACGATATTATAA 18025 37 100.0 33 ..................................... TCCTGAACTGTTCCCGGAAAACATACAGGCATA 18095 37 100.0 35 ..................................... GGATTCTTTTACGCGGTTACAACGGGACAATAATA 18167 37 100.0 36 ..................................... ATCTACCCTGATTGATTGATGGGGGCTTGTTACATT 18240 37 100.0 36 ..................................... CTCACTATTGAATCCATGCTCGACAGTGTAGTTTTG 18313 37 100.0 35 ..................................... ATGTTTGGGAGAGTATCGGATTATCAAGCAGAAAA 18385 37 100.0 37 ..................................... GATATAATAACATATATCCATAATTCCTTTTTATATA 18459 37 100.0 36 ..................................... TCCTCCGGAACACTGCTATCAGATCTTGATTTAATA 18532 37 100.0 36 ..................................... TATCAGACGTGGCCCCGAATGGATGGACATACGTAA 18605 37 100.0 33 ..................................... ACGAATTCGCGAGAGAGTATTCAGAGACGTATC 18675 37 100.0 36 ..................................... ACTGGCTTAGCTGCCAGAATCTTAAGCGATTCCGCG 18748 37 100.0 36 ..................................... ATAAATAAAACACCACAAAACCACCGAGGAAAATAT 18821 37 100.0 38 ..................................... CAAGGAAAGAAGGAAGCAGGCAGAAGAGGATTTAATAA 18896 37 100.0 36 ..................................... AATATGAGTTTCAAACCCATAAAATCAGGGAGACGA 18969 37 100.0 36 ..................................... GATTGACCAAGAAACCGGTTATGCAATCCCCGAAAG 19042 37 100.0 36 ..................................... TTCTCTGCGTCATATTTTACAATTGGTTGCTGTCCT 19115 37 100.0 36 ..................................... TCTAATACCTTCGGTCTAAGGTTTTTGGGAAGCCCG 19188 37 100.0 37 ..................................... TATAAAAGACCTTTGTGGGCTGATATTCGTAATAGAA 19262 37 100.0 33 ..................................... GAAGACAATGTTCACCCACATTTTCTTTGCTTT 19332 37 100.0 35 ..................................... ATTACATGTCAAGAGCAGGCACAAAGACGATTACC 19404 37 100.0 37 ..................................... TCCTCAGTGTGATTTGTATTTTATCCGTATCGGCTTC 19478 37 100.0 37 ..................................... CGGGTATTATCTGACTCAAAACATGAGTTTCAGTATG 19552 37 100.0 36 ..................................... GCTTACTCTCTTCCTTCCTTGTGGCTCCGGTCCCTA 19625 37 100.0 35 ..................................... CCTTGAAAATGGATGACGCAGGAGAGGCGGCGGAA 19697 37 100.0 36 ..................................... TCCTCAACTAATCCAGAAGAGTTTAAACGCTTCCAT 19770 37 100.0 37 ..................................... CAGTTATGCAACCGTTAGAAACATCATCAAAGGAAGA 19844 37 100.0 38 ..................................... TTCGCCTTGGATATCGAGGACTGAGATAATGCAGGATG 19919 37 100.0 32 ..................................... ATTGTGTGGGTATGCTGCACAGTCGTTTCCTA 19988 37 100.0 36 ..................................... GCATGTGCCGATGCTCCACTTTCGGGAACTTTTTCA 20061 37 100.0 34 ..................................... CTCAACCAGGAGCGGGTCATTTTCGGAATACAAA 20132 37 100.0 33 ..................................... TGAAAAAGTTGACGGCATTCATCCTACCGCTAA 20202 37 100.0 33 ..................................... CGAAACGTGGACCGAAGTGGCGACACCAATTGA 20272 37 100.0 37 ..................................... AATGTTCTCTGTGCATGTTCGAATAGTTCAGGGACAA 20346 37 100.0 38 ..................................... TTGGAATTCTTTTCTTTAATGCTGGAAATTCTTCTCTT 20421 37 100.0 35 ..................................... AAACCCATATACACCCCGCCGATGGTGTTTATATT 20493 37 100.0 37 ..................................... TAATTCATTGAAAAGTGTAGTGCCCATTGATTTTGTT 20567 37 100.0 37 ..................................... TTGGAATTCGCTTTCTGATAGCCGGTTTGCGTTGTCG 20641 37 100.0 37 ..................................... CAGGTGATGAAATTGTCATGAATATAGGCATGGTTGC 20715 37 100.0 37 ..................................... AAGGATTGCGTTTCGTGGAGTCTATTGTACCATCATT 20789 37 100.0 36 ..................................... GAGTCAGTTGTTTGGCGTTCGCTGTTTAGTGGTTTT 20862 37 100.0 39 ..................................... AAAGGAACGAAGAAGAGTATCAGAAAGTAATCAGGGAGT 20938 37 100.0 36 ..................................... AAGCTGGGGGATATACTGTAGGGATATACCAGAGTC 21011 37 100.0 34 ..................................... ACAGGTTGAAAAAACTGATCGAAACTATTGATAC 21082 37 100.0 36 ..................................... AAACGGACTTGCATCCTCGATGAGGGTAACGTCACA 21155 37 100.0 36 ..................................... GCTTCCACCTACATTGTAGAGGTCGCGAAGGCTGAA 21228 37 100.0 37 ..................................... TTTTCAGTCCTTTTATTTTGATGTCTTTTAAAGGGAA 21302 37 100.0 35 ..................................... AAAAATAATTAACGGTGTCTCAATGGTTGATTTAA 21374 37 100.0 37 ..................................... AGTTAAAGCGATGTTTCAATAATTCTGTATCTGTGGG 21448 37 100.0 33 ..................................... ATTCTGACAGGAGTTACATCTGCCCCCGATACG 21518 37 100.0 37 ..................................... TTTAAAGTAAAACACGAACGCATGAATGCACTAATAG 21592 37 83.8 0 ..T.....T.A.....................A.G.G | ========== ====== ====== ====== ===================================== ======================================= ================== 64 37 99.7 36 ATCGCAATCGGTTAGAAAACTCGTTAGAGATTGAAAC # Left flank : GCATCCTCATTTTAAGTATCAGGTTTCCCGAAGAAAAGCGGTCAGGATGCAGGCAATATTACTACGAAAAGCTATCACAAACGAACTTCCTATGTATTATCCTCTGGTGTTTAAAAGATGAGGCTAGTAGTTACATATGATATAAGCGACAATAAGATTCGTAACAGGGTTTATAGAATCCTTGAAAAATACGGTGCATGGAAACAGTACAGCGTATTCGAACTTGATATTACTGCAGTGCAACGTGTAGAAATGGAAGATGAAATCAAAACAGAAATTGAGTCTACTGATAAAGTACGCATCTATAGCCTTTGTGACCGTTGCGTAAAAAATATTGTAGACATCGGCCAAAAGACTCCAGATAAAAAGTCAAACATTGTTTAACAGCTTTTTACATTGATGTTTATATATTCTCTGTACGCAAGAGGTTTGGGAATTAATGATTATTTTTTGAGGTTTTAGAAAGGGTTATTACGAAAAAAAACCCTTATTTTCATGCC # Right flank : GCCTATCCGAAAAATGTTGTTACCTGTGTAGATGCCCGACATTAATATTTATCGAAACTTCTACAACAGCCAATAGTATATCCTAAGTGTGGTAAAGAGTCTTAGAGACATCCGGAAGAGAAAAGGGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAACATCCTGAAAGGAAGTGTGAAGATACAAGACATACAGGAAGAGACCTAAACTGTATTATAGCAGAATAAGAAAAGAACTTCTGGAAGGAGGAATAAAAACCATGACAGAAATGACTCTAATAGAAGCACTGAAAAAACTTGCATTAATCACGAAAAAAGGACTGGATGAACTGATTCATATCCCGGATAATGCAAGTGGACCTATTACAATTGGTGAGGCAATTAAAGAAATACAAGATCACGATTCTGACATTTCTGAAACTGATGATTATATAATAGGTAGTGACGGTATCTGGAAAACAGGGGAAGATGGAAGCGAAATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCAATCGGTTAGAAAACTCGTTAGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 13049-12798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPL01000073.1 Methanosarcina mazei strain 3.F.T.2.1 scaffold29_1_size40812-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 13048 29 82.8 47 .A.G.......GC........G....... CTTTGATTTAGGGGCAAGGATCCATTGTCTGTTCGCTCGTGTCGAGA 12972 29 93.1 43 ..T..................G....... CCATATTGAAAAAATGAGAGAGGATCGGATTTTATTATTCGTG 12900 29 82.8 45 ....AGA....T.........G....... CAGTGAAATGGGGTTTTTCAGTTTGAAGGTTTTTCCTTGTCGAGA 12826 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================================== ================== 4 29 89.7 45 AGCAGCTTCCACTAAAACAAGAATTGAAA # Left flank : TTATCATTGTCAAAATCAGGAAAAATTCTACAAGGTTATTGATCTTAAAGATCCTCGTGAAGTAAGTTATGAATCTGAGACTTATGTAATTGCTCCTAAAACTATTCCAGAAGATCTTAACTTGGATGGCGGGAAAAAGTTAATCCTGCATATTGTCATATCTGCTCGCCATGTTGAAAACTTTCGGTTACATGATGATCATTTTAATGCAACCAATGTTGCTATAGTTTATAATGTAGACCTAGAGCCTAAAGATGACTGGTTACCTTACGTTCAGGAAATAGTTGAAATAGCAAAACCATTGATCCATCGTTATGAAGATGTTGATGTTTGTCTAATTTGCCCTTCAGTCGTAGCTTTTGCACTTGGAATGGCTTTCTCAAGAAAAGGATCTTTAAAAGTCTGTCATTATTTTAGTGATGGAAAATATAGGCCTGTATTTCAACTCTCCGAGATAGAAGGTCACCCCCCTTTCAGTTAACTGTGAGCTAGAGCTGCAA # Right flank : TGCAGACGAAAAACGCAAATAAGAGTACAGACAAATTCATTCGATAACAAGATCCATTAAAACAAAGATTGTAATTCTATTTCTTCAAATTTTTCTAAAGAGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAAAAAGCAGCCGATGCGAATCTAATTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCAAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATGTGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTACAATCAATGAATATTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATC # Questionable array : NO Score: 3.54 # Score Detail : 1:0, 2:0, 3:3, 4:0.49, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCAGCTTCCACTAAAACAAGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 2 25913-20747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJPL01000073.1 Methanosarcina mazei strain 3.F.T.2.1 scaffold29_1_size40812-refined, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 25912 37 100.0 35 ..................................... CCCTGTATCCGTCTTTTTTTGAATCCGATTTTATT 25840 37 100.0 35 ..................................... ACAATACTTTCGCTAATACTGGCTGGCATGGGATT 25768 37 100.0 36 ..................................... ATAATCCAGGAGCGAGAGGACCGGAAAGAAGGCGAA 25695 37 100.0 35 ..................................... AAAATGTATTTTCCAGCATCAGTAACCATAGCAAG 25623 37 100.0 38 ..................................... CGGACATTGACAGAATCATATCAAAGGGCAATTTTGGG 25548 37 100.0 33 ..................................... AAATGATGTCTTGATACATATCTTAGTTTTGTT 25478 37 100.0 34 ..................................... AGGGTTTCATGCTGTTTTCCGTTCATTCATACAC 25407 37 100.0 35 ..................................... TACGGACTGGAATTAAACACGGCTTCAAAGGCGAT 25335 37 100.0 36 ..................................... ATAGCGATTGTATGAACTCCGTGAACATCCTTCGGT 25262 37 100.0 37 ..................................... GATATTAACCACCCAGGCATGGGCGAGTCTGTTTTAT 25188 37 97.3 35 .....C............................... ATCTCCCTCTCTTTTTCATCTAGAGAATTCCGCAA 25116 37 100.0 34 ..................................... ACGACAGAATCAGGACACAAAATAAGCAAGGATT 25045 37 100.0 35 ..................................... CGGGTTCCACATGAACATGGATAGTACATGTTATA 24973 37 100.0 35 ..................................... TCTAATGTCAACTCTATGTATAAGTATGTACTATT 24901 37 100.0 35 ..................................... CATAGTAGCAGACGCATCCCCCGGCTTTGTTTCGG 24829 37 100.0 35 ..................................... ATCGCGTTCAGGTGCGAAGTTCCCATATCCTCCTT 24757 37 100.0 34 ..................................... ATGTATAGAGTTCATATTTTTGTACCATTATTTT 24686 37 100.0 35 ..................................... TGGATTCCTCCGAACGAATCAGTAGCTACAGGCAG 24614 37 100.0 36 ..................................... AAATTTTGATTCCTGGACGTTCTGAGCAGAAAATAG 24541 37 100.0 35 ..................................... CAGCTACTCCTGTAAAATCGTACACCGTTGTAGAA 24469 37 100.0 35 ..................................... TTGTTTACATCTATCATTTTCAATGAAAACGCAAG 24397 37 100.0 36 ..................................... TTATACAGTGCTTCAATAGGTCCGGTCATTTTCTTA 24324 37 100.0 37 ..................................... TAAAAAGAGTAAATGCGTTTTTTGCAGCTAGAGAACT 24250 37 100.0 35 ..................................... ACATACTCAAGTGCTTCAGGTGCAACGACAATAAG 24178 37 100.0 34 ..................................... AATATAATCAACATGGATACACATACATGAAAAA 24107 37 100.0 37 ..................................... CAATATCTTAAGGCTAAGTCCTTCAGAGCTGCACCTT 24033 37 100.0 35 ..................................... AGGCTATGCGTTTCTTAACTCGATTGTTCTATAGA 23961 37 100.0 35 ..................................... TGAACCGAGGGAAGATGATTGAATATATCTTACTT 23889 37 100.0 37 ..................................... ACATTCTTATAATTACCTTCGTTCTCCCAAAAAACAT 23815 37 100.0 35 ..................................... TTTTTATATCAAGTTCGTTCATTGTGTTTTCACCT 23743 37 100.0 34 ..................................... TTGATTCCGTCATTCTGATCTGTAGATGACCAAA 23672 37 100.0 37 ..................................... TATCGTATCCTAATTTTCATTAGGATATTCATGCTTC 23598 37 100.0 36 ..................................... CGTCAATTATTCCCTCCCAATCGACTACAGCAAAAA 23525 37 100.0 32 ..................................... TGGCATATGATTGATTAGATGTAATGAAGTGT 23456 37 100.0 35 ..................................... TCTGCTGTTTGCCCTCAGTGAGTTTCAGGAGATCT 23384 37 100.0 36 ..................................... ATCTTACGGGTTCTGTCATACAGGAACCTCCAATAT 23311 37 100.0 35 ..................................... ATAAAAGTAATCTCACTATATCAGGCACAAGAGGC 23239 37 100.0 33 ..................................... CTTCGTCGCCTGCTGAAAATGTATTTTCGTCGA 23169 37 100.0 36 ..................................... CCTCTCCTTATACTCCGGCAGCTTCTCCTGATATGG 23096 37 100.0 37 ..................................... CAAACCCGGGCAAGCCGGTTACAGGCATTTCAAGAAT 23022 37 100.0 36 ..................................... TAAAATGAATGCTGCTGCAGATATGAGACAAAATGA 22949 37 100.0 35 ..................................... TGATCCAACCAATCACGCCCAACCGTTTTGTTGGT 22877 37 100.0 34 ..................................... CGATTACTCCAGGGTCACGGTGGAACCCGTCAGA 22806 37 100.0 34 ..................................... TCGTCTGGTAATACGGCATCCTGAGTGAAATAGA 22735 37 100.0 36 ..................................... CAATTATCTTCTTTCCTATCCTCATTACGTCAACTT 22662 37 100.0 34 ..................................... TTGATGGAATCCTGTAGTTTTGGACTCCGTGCGG 22591 37 100.0 34 ..................................... AGGCCAGGGATGAAAAGGGAATTCTCGCCTACCG 22520 37 100.0 35 ..................................... TTTTCGTCTATGTTGCCATGTGCATTACTAGTTTC 22448 37 97.3 35 .....C............................... CAGGTAACTCCTGTTTCTGAAGCATCCGGACCGAT 22376 37 97.3 36 .....C............................... ATCTCTTTGCGTTGTCTTCTAATTGTATCAGTATCT 22303 37 97.3 35 .....C............................... AATATAACTTGTGCGTATTATAGTATAGAGCAAAG 22231 37 97.3 36 .....C............................... AACCCTGCTTATCCTGATGACGGCATTATATTCGGA 22158 37 97.3 36 .....C............................... CTTGTTGCAGTTTGTTCTGTGACTTCTCTGCCATTC 22085 37 97.3 38 .....C............................... TATCGCATGTCATATGTTAAATTCCAGATCAGAACACT 22010 37 97.3 34 .....C............................... TAGTCGTCCAGTTCCGCCCACAGTTCAAACATTT 21939 37 97.3 33 .....C............................... AAAAGTCAGTCCCGGCCAGCCTATGCGCTAAGA 21869 37 97.3 33 .....C............................... TAATAATCTGTTTGACAGTTGCAATGGTTACGG 21799 37 97.3 37 .....C............................... TTCAGGTGTAAAACATGGCATATAAACAGCCTCAGGG 21725 37 97.3 36 .....C............................... AGCTGGGCATTTTGAATCGAATAAACTATATTGAAC 21652 37 97.3 35 .....C............................... TAAAATTTGACTGTTGAATTAATTTCGATGTTGTT 21580 37 97.3 38 .....C............................... CCGAACGTATTGTATTTGGTGGATTATACGACGGTAAT 21505 37 97.3 35 .....C............................... TTATTTAGATCGAAATGTCCTAAAATACCAGCTGC 21433 37 97.3 34 .....C............................... AAATAGCATTAACCTGTTTTGCTTCATCTTCGGT 21362 37 97.3 35 .....C............................... TACTCTTGATGCTTCAGCAAAAACAATATTACTCA 21290 37 97.3 34 .....C............................... AAATGCGACGGACACAGCCATTCAGATGATGTAC 21219 37 97.3 37 .....C............................... GATATTAACCACCCAGGCATGGGCGAGTCTGTTTTAT 21145 37 97.3 36 .....C............................... TTTCCTAATTTGAATTTTAGAAATGGATTTGTATTT 21072 37 97.3 35 .....C............................... CACTATACAGAAACTTGCAGAAATTACACGATACA 21000 37 97.3 35 .....C............................... GCAAATTGATAGCAACAGCTAAAATCTATAAAGAT 20928 37 97.3 37 .....C............................... GCCAATAGTTCTCTTAGGTGATAGCCCTTACATACGT 20854 37 97.3 34 .....C............................... TATAAATCGCATCACATCAAGATCACTGCAAGGA 20783 37 97.3 0 .....C............................... | ========== ====== ====== ====== ===================================== ====================================== ================== 72 37 99.1 35 ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : CCGAAATTTAAAAATATGTCGCTCGACACGGAGAAATATGGAGAAGGCCTGACTGTTATCCGTTCAGCCCAGTGCCCATACTCAGTAAAAAACGTGGATGCTATTTTGAAAACTGCAAGGGACAAATTGAAAATAAAAGCTAACCTGATTGACCTTGAGAGTTCGGATGAGGCTCAGCATGTGCCCTGTGCTTTCGGAACCTTCTGTATAATTTATAATGGCAGGGTTATCAGCCATCACCCAATCAGTAATACAAGGTTTGAAAACATTATGAAAAAAATAATTCAATAGTCCATACCAGATTTCAAAACCCTTCCACAGATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTTCCAAACCACTAAAAAAACCCTTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGCCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : CTCATCTTTGAGTAAAATTTTTATTTAATTATTATTTTTTAGCTATTTTTATATTTATTTGATTTTAAACTATTGTAGTCAGCATTAAAATAAATTTTCATAATATTGACTAAATTTAGAAACTTTTATATGTAATCGAATATTTTTTAAGAGATAAATTATTTTAAAGGAGCATTTCCGATAATGAATGATGATGAACTTCAACTCATATTCTTGCTCCATGATCTTGGCATATTTTTTAAGAGAACAGGCTTGCCCCCCTTAGAAAAATTCAGTAAATTGACGGAAAATGAGATAGGTAATGGAGGGTCACACTCAATATGGAGTGCTTCATTTGCTGAAGAGCTTGGTCTGAGCCAGGATATCCAGAATATAATACTATACCACCATAATTACGATTCTTTGGAAGGAGAGAATGCAAGAATCGCAAGTGTACTTGGTCAAGCTGCTGAATTCTTCTCAGGAGAAGAAGAGTTGGGGCCGGTAAACCTTCTATCTGT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGAGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [88.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA //