Array 1 1934726-1939413 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM003052.1 Xanthomonas translucens pv. cerealis strain CFBP 2541 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 1934726 31 100.0 36 ............................... TTTTCCAAATTGAGCGGACTTGTAGGCCATATGCGG 1934793 31 100.0 33 ............................... GGCGTATTCCAGATAGGCGGCCTCGCATCGCAG 1934857 31 100.0 36 ............................... CGGCCCCCGATCGACCATAGGAGCAAAGCGATGGAC 1934924 31 100.0 35 ............................... GCTCATGGTGTGCAATGGTAATGCACACCATGAGA 1934990 31 100.0 34 ............................... AGTTGCGGGGGCTGCGCCCCCCGTGTCCTCCCTG 1935055 31 100.0 34 ............................... AGCGCGGCAGGCATCAAGGCCGCTCACCTGGACG 1935120 31 100.0 34 ............................... CTGGCTACGCCTTGTCGAATAACAACGCCAACAT 1935185 31 100.0 33 ............................... GTTTTGAATCGCGTGCTCAAGTGCCTTGTCGTA 1935249 31 100.0 34 ............................... CAAGCCGTGAACCCCATCGTCACTCGCTTCGCCG 1935314 31 100.0 35 ............................... TCTCTTGCTGTCCGCAGGGTCACTCCTCACCCGTA 1935380 31 100.0 34 ............................... TGATGCTCGGCGGGTTTAAATTCAGCCTGAACAC 1935445 31 100.0 34 ............................... GCGCCCTGCGACGCCTGCGCGCAACCCGCCGCCG 1935510 31 100.0 34 ............................... AGTCAGCATCGGTCGGGTGTCCTGCCGGGTGTAT 1935575 31 100.0 34 ............................... GCGCGCATCCCTCTTAATGTCCCACGGGTCAACC 1935640 31 100.0 35 ............................... ATTCCCAAGCTTGTCGCACTCGGCATTAGTGTACG 1935706 31 100.0 34 ............................... AATCATAGCCGCCCAACCACTTGCCCGAACCAAG 1935771 31 100.0 34 ............................... ACTTCCAGCCAGTGGCACGTGTCCGGCGTCCTGC 1935836 31 100.0 34 ............................... CACATAAAGGAGAGAGCCGATCATATCCGGCGTG 1935901 31 100.0 36 ............................... TTCAAGCATTAGTAGTACCTCTCTTCCGGTTCGAAA 1935968 31 100.0 32 ............................... ACCCGTGCTGCGCGTAGCGGGGTGATTCGCAA 1936031 31 100.0 34 ............................... CGCTGCAGCCATCACGCTGCTTGGCGACTTGGAC 1936096 31 100.0 35 ............................... TCTTTGTGAACGGCTTCAGCTTGGTCAATCATAAA 1936162 31 100.0 33 ............................... CTGCTTTAACGACAATCGCGGCGCAACCGGCTT 1936226 31 100.0 35 ............................... TCGCGGCCTGCGAGCGTCCACTCGCGTTCGTCGTC 1936292 31 100.0 34 ............................... AGTCCTGCCATACGGGCGGCGAAGTGTATCCCTC 1936357 31 100.0 35 ............................... AAGAAACGGTCCTGACACGCATGCATAACACACAT 1936423 31 100.0 36 ............................... GAACAGCTACGCAATATGCGCGATGCGGTAATGGCG 1936490 31 100.0 33 ............................... TGGTGTCGCGTTCCTTGTCCTTGTTTTATCCTT 1936554 31 100.0 35 ............................... AGCAGCAACTACGGACGGGACTTTGCTGTCGTGGT 1936620 31 100.0 35 ............................... CAGTACACCAGGTGATTGAGGCGCCAGCGATCAAG 1936686 31 100.0 37 ............................... TTGATCGCGGTGTAGGCCATCAGCGCGGCGATCGGCG 1936754 31 100.0 34 ............................... CAGCCCGCCGACCGGTGAATCGTTCCAAGTAAGA 1936819 31 100.0 34 ............................... CATAAGGCGACTTCGCACGAAAGGCTGGAAGCTG 1936884 31 100.0 33 ............................... ACCATGGCAAAGCCGGCGAGCCGATGACAACTG 1936948 31 100.0 34 ............................... TGACTGGTCGCGACGAACACGTTGGCCGGCTCGT 1937013 31 100.0 37 ............................... TCGCTGCACCGCCCGCTGGCGTTACCACGCTCCAGTC 1937081 31 100.0 35 ............................... AGCTTCGAGGCCACCCACTTGCGGGTATCGACACG 1937147 31 100.0 36 ............................... ATGCGGCTAGCGTCCTTGTTCGGCGGCACGGGCAGA 1937214 31 100.0 35 ............................... TGCATCCAGTACGCAGACAACTCTGCCTCGCCAGG 1937280 31 100.0 33 ............................... GCAATCGCGCCGCCCCAATCCTTGCCGAAAAGA 1937344 31 100.0 35 ............................... AACGTGCGCTACGACGCACCAAACCTGCTGGCCGA 1937410 31 100.0 34 ............................... TGGTCAGAACTTTCATGCGGTTACCTTGCGAGCG 1937475 31 100.0 35 ............................... GTGATCCGGATTACCTTGACGACGGCTTGCCCGTA 1937541 31 100.0 38 ............................... GTGCCGCAGCGCTTGCACCATTGAGCGATGATCTCGGG 1937610 31 100.0 35 ............................... TTCCCGTCCACCCAGAAACCCCAGACGCCGCAGTA 1937676 31 100.0 33 ............................... CAGCTGATGCGCACCCCAAGCAACCACAGGCCG 1937740 31 100.0 33 ............................... TGGCCTACCGCCGCAGACACCGATTGGATATTC 1937804 31 100.0 34 ............................... ATGGGCGGCACGCTGGGCGCCGTGGTCTACCTGC 1937869 31 100.0 33 ............................... ACCGAGAAGCTGCGCGCAGGCCGGATGGAGATC 1937933 31 100.0 33 ............................... CGGATAAAGACATCGCCCCGGGCACCGAGCACA 1937997 31 100.0 36 ............................... ATTCGGGCTTGTCCAGTTTGTTGAAACACGCGGAAG 1938064 31 100.0 35 ............................... GCGTAGCCACTCGGACGTGGCGCACAGGTCGGCCG 1938130 31 100.0 35 ............................... CTTGCCGGCGTACGGACGGAACCCGCGGCCTACGA 1938196 31 100.0 35 ............................... ACCTTGACGCCGTGGCTGGTGCGAATCGAACAAGG 1938262 31 100.0 35 ............................... CCTTACCGGGGGCGCCCGTTAATACGACCCAAGTA 1938328 31 100.0 37 ............................... ACGCCTCGCGTCTCCACGACGCGGTTGCGCATGTAGT 1938396 31 100.0 33 ............................... GCCGCTTCCTGGCCCGGGTTGCTGCCCCCAGGC 1938460 31 100.0 34 ............................... TCGGGCAGGTAGAGGCGCTGCGCGCACGCGGAGG 1938525 31 100.0 36 ............................... CAGGAGAGTGCCGGCGTAGCGCTGTATTCGTTCATC 1938592 31 100.0 35 ............................... AGATGGGAAGAACCGCAGACCGCCCAAGATATCCC 1938658 31 100.0 35 ............................... AGCGGTGCCCAGTGGCTCGCCTCGCCGTCCCACGC 1938724 31 100.0 36 ............................... CGGGCAAAAGACCCCCAGGTGCATAAAATCTAGCAC 1938791 31 100.0 36 ............................... CTAACTAAAGCCACCAAAAGTTCAAGGTCGCTGGGT 1938858 31 100.0 35 ............................... TCTGTGGACATACCGGTAGTTGCAACGATCTTAGC 1938924 31 100.0 34 ............................... TTTTAAGCGCAAACGCCGTCTCTCTCTCTGCATT 1938989 31 96.8 34 ........A...................... AGGTCGAACCAGTCCTGGAAGCCCGCATACTGGC 1939054 31 100.0 33 ............................... GCTGCCGTGAAGAAGACCACGGCCATCCCCGAA 1939118 31 96.8 36 .....................A......... GGGACAAAGGAAGTCGATGCGCTGGGAGATTCCAAC 1939185 31 100.0 35 ............................... ATCGCCACCGACGCGCACGCGCGGATGCAGAACGG 1939251 31 96.8 36 .............A................. AGGAGGTACAGACCTTGCGCCACGCTTGGGGAAAGG 1939318 31 96.8 35 ................T.............. CACCGCACCGTCCGCAACCTGCTGCCGATTAGCAC 1939384 30 87.1 0 .......G...............-GC..... | ========== ====== ====== ====== =============================== ====================================== ================== 72 31 99.6 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCAGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAAGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTCCGCTTCTATCAACTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTGGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTAATCTTCTGATGCGAACCGCAAGCGACCGGGGAAAGCCTGGCAGGCTCGCGAAACACGCCAAGTCATTGATTTTAAATTAAAACACCTGACCCACTCCGTTCATTGTATGCCTGCGGCAGCCCAATTTGATTGCGTCTTCGAAGGGTTCCGCAAAAGTGCGGACTTTTTCCCAGCACCCATCAGCACTTATGCTCAGGGCG # Right flank : CAACTTTATCTGCCTACAAAAAAGGGCGCAGTCTCGCGACTGCGCCCAGCGTGCGGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGCGACTGCGGTGTGCTTAGCGGGACGCGATGTGCATCACTTGACTTCGAATTCCTGCGCCGTTCCGGCCGGCTGGCCGTTCACGGTAACCGCGGCCTTGTACTTGCCGGCCGGCCAGCCCTTGGGGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGTTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGGTCAGCGGCGCCACCGCTTTGTCGGTGCCGGCGGTATTACCCACGGCCACCGAGGCGACCGTCACCGTGCCGGCATTGGCCGCGGCCGGCGCCGTCTCTGCCGGACCTGGCATCGCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //