Array 1 39223-38157 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOLP01000105.1 Escherichia coli strain SC395 NODE_17_length_108735_cov_155.252_ID_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39222 29 100.0 32 ............................. CGCCCGCGCCAGTAGTTCGCGTGACCCGGCTC 39161 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 39100 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 39039 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 38978 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 38917 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 38856 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 38795 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 38734 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 38673 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 38612 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 38551 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 38490 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 38429 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 38368 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 38307 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 38246 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 38185 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 65866-64922 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOLP01000105.1 Escherichia coli strain SC395 NODE_17_length_108735_cov_155.252_ID_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65865 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 65804 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 65743 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 65682 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 65621 29 100.0 32 ............................. CGAATTTTGCACACTACGTCGCTGAGGGTAAA 65560 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 65499 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 65438 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 65377 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 65316 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 65255 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 65194 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 65133 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 65072 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 65011 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 64950 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //