Array 1 22709-25068 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIRP010000007.1 Mannheimia haemolytica strain MHA.Sh.MOR19 7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 22709 32 100.0 33 ................................ TTACTAAATCTTTTTTAAAATAGCGATAATCAT 22774 32 100.0 36 ................................ CTGATTGTGAGTATTGGGTACGATTTGATAAGCAAA 22842 32 100.0 36 ................................ AATCGTTTGACATATTTATTCAATTTGTAAATAAAA 22910 32 100.0 34 ................................ TTTAGATCCAACTTTTTTGATTTTAACAACATCA 22976 32 100.0 35 ................................ AATTTTGCCACAAATTGGGCTATTAAAAAATAAAT 23043 32 100.0 34 ................................ TGAAAGCCGTTTAATTGTGGGTATACCATAAAAT 23109 32 100.0 37 ................................ TAACGTTTTAATGTTAGGAGATCGAAAAATTGAGTAT 23178 32 100.0 36 ................................ AGCAACGATCTAAATATAATCTCATCAATATAGTAA 23246 32 100.0 35 ................................ ATTCTTAGATGAATTAAAAAATGCACTATCAGAAC 23313 32 100.0 34 ................................ TTTAGATCCAACTTTTTTGATTTTCACAAGATCA 23379 32 100.0 36 ................................ CTCTTGTTGTTTAACTGTAGATATTATCTTAAAATT 23447 32 100.0 35 ................................ ATAGCGGTTTGCGTTTAAATCAATGTCAAATTGTC 23514 32 100.0 36 ................................ AATTTTACCACTTACCGGGCTATCAAAAAACAGATT 23582 32 100.0 33 ................................ TGACTAATTGCCAAAAACAGGCGATCAATCCGC 23647 32 100.0 35 ................................ GGTTTGTGAACTACTTGTAAAATCCGCCTCTTGTG 23714 32 100.0 34 ................................ TAGATCTACTAAGTGATCGTAAAAGTCCGCATTT 23780 32 100.0 35 ................................ AGAAGGATTTATTGAAGATTGTGAACAAAATACAG 23847 32 100.0 35 ................................ AATATTGCCTACAAGTAAGCCGTACGGCAATGCCA 23914 32 100.0 34 ................................ CTCATATCTTGTCAGCTAAAGAATTTATTCGTGG 23980 32 100.0 34 ................................ CCTCCCAATGGAAAATGGCACCGAAAAAAGAGTC 24046 32 100.0 33 ................................ GGGTTACAAACTCTATTGCCTCAATTAAATCTA 24111 32 100.0 34 ................................ ACTATAGCAATTTTCGATCCATTCTTTAGATCCT 24177 32 100.0 33 ................................ ATGTCTCCAACCTTTGCCTCAGGCGATATGATT 24242 32 100.0 32 ................................ GTCGGTTAGTGGGCGGATATCTGATTTTGCTC 24306 32 100.0 34 ................................ TGCAACAAGTGATTTTGTTTGTTCGTTGCGGGCA 24372 32 100.0 36 ................................ AACGTTGGCAGAGACAAACCAATCAAACTTTATAAG 24440 32 100.0 34 ................................ ATCAGCTTTCTTGAATGCCATAACATATTGGCGG 24506 32 100.0 35 ................................ ATAAGCGGTAAAATAGATGGTGACGGGTAAGGCAA 24573 32 100.0 32 ................................ TATTTACGCTGGCGGATATATCCGCCAAAAAT 24637 32 100.0 35 ................................ TTGCCACAAGGGCGATGTTTCGCTTCAGAAGAAGA 24704 32 100.0 35 ................................ CGCATAACTTACTCTAAGTCCTGTGCTTTGAGCAA 24771 32 100.0 36 ................................ CAAGCTCCAACGTAAACGCTACCGTCTGCGAATTGT 24839 32 100.0 33 ................................ AATATCACGCTGATAGGCGATTAGGTTTAGAAT 24904 32 100.0 34 ................................ TTTCAACCATTTATCGGCTTGTTCTTGGGTGATT 24970 32 100.0 35 ................................ CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG 25037 32 93.8 0 ..........T............T........ | ========== ====== ====== ====== ================================ ===================================== ================== 36 32 99.8 35 GCAGCCACCTACGCGTGGCTGTGAATTGAAAC # Left flank : TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA # Right flank : CGGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTACGCGTGGCTGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //