Array 1 15560-17176 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGWL01000009.1 Lactobacillus crispatus strain NCK1350 NODE_9_length_103570_cov_39.6422__reversed_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15560 29 96.6 32 ............................C GTGTTGTTTCCATATTCATTAGATAAAACATC 15621 29 100.0 32 ............................. CTCTTGAAGACCATCTTTTTGGTCCTCAGTCA 15682 29 100.0 32 ............................. AACAATATGACCGCTACTGAATTGTTGAAGCA 15743 29 100.0 32 ............................. TAATGGCTGATGCAACAGCAGTCACACCATTT 15804 29 96.6 32 ............................C GTATAAAAAGCTAATTTGTACGCGTTTTGTTT 15865 29 96.6 32 ............................C ATATCATGTGTTGACCAACCTAAATTTTCCAG 15926 29 100.0 32 ............................. AGTATTTTTTCTGTGCCTCTCTCAAGCACATT 15987 29 100.0 33 ............................. AAGCAAAAAGCTTTAAATATTTTCAATCAAGCT 16049 29 100.0 32 ............................. GGAATCATCAGAAACTAAATCAAAGAATTTTA 16110 29 100.0 32 ............................. ACGTTTTAGGACATTCTAGAGTGACAACTGCA 16171 29 96.6 32 ............................C GCTTGCAGAATCCATTGAAGTCTCAATATCTT 16232 29 96.6 32 ............................C CATTGTCCCCGAACCAGCCTGCCGTACTGTGC 16293 29 100.0 32 ............................. GATTTCTTTAACCGCTTTTTGCAAAATGTCAT 16354 29 100.0 32 ............................. TCGGCCGTTGCTTCAAACGCCCAGAATGAGCA 16415 29 100.0 32 ............................. TCGGCCGTTGCTTCAAACGCCCAGAATGAGCA 16476 29 96.6 32 ............................A TTATTAGCAAGCTATTTATTTTCATGGAGGAG 16537 29 100.0 32 ............................. AGCATTGGTGCAGCAGGTTTATGGCAATTTTA 16598 29 96.6 32 ............................C CTACAATGATGCAAGAATGAGTAGCATGAAAG 16659 29 100.0 32 ............................. AGTCCTTCATAAAGACCACTTACAAAGTCGTC 16720 29 100.0 32 ............................. GTCTTTACATAACTTTGCAATATCTGCATCAG 16781 29 100.0 32 ............................. AGTCCTTCATAAAGACCACTTACAAAGTCGTC 16842 29 100.0 32 ............................. ACTTCCAAAACCAAATTTAATAATTGTGGATG 16903 29 100.0 32 ............................. AGCATTGGTGCAGCAGGTTTATGGCAATTTTA 16964 29 96.6 32 ............................C CTACAATGATGCAAGAATGAGTAGCATGAAAG 17025 29 96.6 32 ............................C ACTGTAATTGAAGATACAAAACTATCGTGGAA 17086 29 96.6 32 ........................C.... ATGCAGAGTGGCGTGCATGTCATGATTACAGG 17147 29 82.8 0 ..G..........A...........AA.A | C [17169] ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.1 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : AGCAGTCTTTTTGTACTATAGACTATTTATGATACTATGATATCTTCATCAGAATATCTATAAAAAATGAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCACGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTCGCTTTGAAAAAAATAGATAATGGCGTTGATGCAGAAATGAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7613-6200 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGWL01000005.1 Lactobacillus crispatus strain NCK1350 NODE_5_length_143751_cov_46.1079, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================= ================== 7612 29 100.0 32 ............................. AGTTCAAATGTTACTTGGCCACGCAAATATAA 7551 29 100.0 32 ............................. TAATACAATAATTTTTGCCTTGAATAAGGTTT 7490 29 96.6 33 ............................T TGTGGATGAGTCACAGCACTCAAGAGCTAAAAC 7428 29 100.0 32 ............................. GTTGATTTAGTCTCTGAGGGCTTCAATGTACC 7367 29 100.0 32 ............................. ATCGTAGACATGGCAATTATGAAATGTATGAA 7306 29 96.6 32 ............................T AATTTGGTCATTACGCCAAACTGTCTTTCTCA 7245 29 96.6 32 ............................T AAGTCAGTTAGTTCACCGGTTACGAAGCCAGT 7184 29 100.0 32 ............................. GTGATCACTACCAGAAAAAATGCGAGAAACAA 7123 29 100.0 32 ............................. GAATCGATTCCAATTCAGTTAACTGGCGATAG 7062 29 100.0 33 ............................. CATCTAAAGTAGCAGAGTTGTCAATCAAATTAG 7000 29 96.6 32 ............................T ATGCTGAGGATCAAGGTCAGGTGTTGCATGAA 6939 29 96.6 32 ............................T ACATTGATTAACTTGCTTAGCAACATCAAGAA 6878 29 100.0 32 ............................. AATGAAATTTTTAATGGCTGATATATTGAGTG 6817 29 96.6 32 ............................T GTTTCTCTAGCTGGTGGTACCAATGGTACTAA 6756 29 96.6 32 ............................T AAAAAAGTAATTGGTGATCCTAAAACGTATTC 6695 29 96.6 32 ............................T AAACGCACAGGCGTATTAGTGGGCGGACACCA 6634 29 100.0 32 ............................. ATGTGGGCAAGGTTCAATTCCTTGCTAGTTCT 6573 29 96.6 32 ............................T CGCTTGGTTACGGGCTAGGCAAAGCAAGCTTT 6512 29 100.0 71 ............................. AGTCTGCAAAGAACTTAGACATTCTCTTGCTTGTATTCTCCAATCATTTTACTTGGTGATGATAAAAACGG 6412 29 93.1 32 ...........AC................ TTGATTTGGAGTCAAGTCGTTTACCATTAACA 6351 29 89.7 32 ...........AC...............T TACAATCCAACTAAGGCACAAATTAAAAAGTA 6290 29 93.1 32 ...........AC................ AATCTAGTTTATGATACAATAAACACAGATAT 6229 29 79.3 0 ...........AC....T......T.A.T | A [6208] ========== ====== ====== ====== ============================= ======================================================================= ================== 23 29 96.7 34 GTATTCTCCACGTATGTGGAGGTGATCCC # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATGCTTTTGATTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGTTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTCTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCTAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : GTCCTTGAGCGCACAGATAAATAGCCTGTAAACGCCGGTATGCCAGTATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGACAACGCGCTGGATTTTTAGGTTGTATAGATAAGTGTCCGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATGGTTGCCTATATTGCAAAAATTAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAACATTCAGTGAAAATGGTAATAGCCTTCATATTCATATGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAACA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10735-10341 **** Predicted by CRISPRDetect 2.4 *** >NZ_SGWL01000005.1 Lactobacillus crispatus strain NCK1350 NODE_5_length_143751_cov_46.1079, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 10734 28 89.3 33 ............TA.........C.... CAGTTTAGGTACCATTTTTTGACGATCAAAATC 10673 28 100.0 34 ............................ TGACAAGGTTGACCAAGCCGTTAAGACCATGCAA 10611 28 100.0 33 ............................ TTAAAATAATTAAGGAGGGAACTCCAAATATCG 10550 28 100.0 33 ............................ CAATTTCTTCCTTCGACATGTCCTTAAGAGCAT 10489 28 89.3 33 ...........ACA.............. TGACAGCTCTGCTGTAGTGATCGAATCAGACAA 10428 28 89.3 32 ...........ACA.............. TCCGACGGGGTACCCCGCGGCTGTCCATCATC 10368 28 71.4 0 ...........ACA........CT.AAT | ========== ====== ====== ====== ============================ ================================== ================== 7 28 91.3 33 GTATTCTCCACGAGTGTGGAGGTGATCC # Left flank : CGGTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCATCCACAGCATATTATTGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGCGATGCTGATATATTGTGGATCATTTA # Right flank : AGCTGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGATAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Alternate repeat : GTATTCTCCACACATGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //