Array 1 30283-25666 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZGO01000002.1 Moraxella catarrhalis strain COPD_M115 NODE_2_length_317161_cov_9.5417, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 30282 28 100.0 32 ............................ TATTCATCTCTTCAATCTCTTTTATTATCTTC 30222 28 100.0 33 ............................ AGCTAGGGCGGTGCGTTCGAAGTCCGCCATGAT 30161 28 100.0 32 ............................ TATATTACCAGCAGATGGGTAGTATTGAAGCT 30101 28 100.0 32 ............................ AAATTCGTACCAGAAACGAAAATAGATTCTGG 30041 28 100.0 32 ............................ ACACGGCTATCATGATAATAGCAACTTTCACA 29981 28 100.0 32 ............................ GCTAACTTCGTTGTCTACTTGTTGGATAGTAG 29921 28 100.0 32 ............................ ACTTTCAATGGGTCAATAGCGTTAACGCCTTT 29861 28 100.0 32 ............................ TATTGCTTCTCTAACGATTAACATTATTATTC 29801 28 100.0 32 ............................ TAGTATTGTTTTAACGAAAAGTTTACTATCTG 29741 28 100.0 32 ............................ TAGACGACCAAGTGAGTTTGATAGAACTTTTA 29681 28 100.0 32 ............................ AACATGCTTGATGAGATCTCGCTCAATCTCTA 29621 28 100.0 32 ............................ CTTATTCCACTGTTTTTGTTACCGTAAGCGTA 29561 28 96.4 32 G........................... AAGATAAAGAAAGAGCAATGAGCGAATGTTTG 29501 28 100.0 33 ............................ ATAATAATTACTGCGAACATGAGATAGTCTCCT 29440 28 100.0 31 ............................ TTTTAGTTCAGCATGGATAAGTTTACTCATG 29381 28 100.0 32 ............................ AAAAGACATAAGGTTGAATGATGAGTGATGAT 29321 28 100.0 32 ............................ ACATTACTTGCAGATGGGTAGTAGTCTAACTC 29261 28 100.0 32 ............................ AAGGTATCAGCCCACCAATCGATATCTGAGCG 29201 28 96.4 33 .....T...................... ATAATTCCACCATTCGGTTTCTTTGTCTGAGTC 29140 28 100.0 32 ............................ TCTGGTTGGTATTTTACATCAAACCCTTTAAT 29080 28 100.0 32 ............................ TTTTAAACCTGCACAGAACAATGAAAGACCGA 29020 28 100.0 32 ............................ TGTCGCTCATTTGGCGGTGTCCACTCGCCCCG 28960 28 100.0 33 ............................ ATAAATTCACTGCACTATCTATCAAGTTTTGTA 28899 28 100.0 33 ............................ ATTCATTTTCTTGTAAATCTAAAAATATTTTGA 28838 28 100.0 33 ............................ GTTACAGCAAGTTTGACAACATCAAACGGCTCA 28777 28 100.0 32 ............................ TACTTGTCTATCCAAAATCAGTTTATACGCTG 28717 28 100.0 33 ............................ CCAAGACCCCGCTATGCCGCCTCAGCAGTTTTT 28656 28 100.0 32 ............................ ATCGTACTCCCGACGTTCTACCCAGGAATTAT 28596 28 100.0 32 ............................ TCTTTAAAGACTGCCCCTTTTTCACTTAACAG 28536 28 100.0 32 ............................ TTGTCTGCGTCTGGATGTCTATATTTGACTCT 28476 28 100.0 32 ............................ AGCATTTTCAGGCTTTGAAAAATATTCAAGAT 28416 28 100.0 34 ............................ CATTCTCTGTATTCGTTCATATCGCCCCCTTGAT 28354 28 100.0 32 ............................ TTAGGCAGTAAGATGTTACAGATAACATAAGC 28294 28 100.0 32 ............................ ATCTATATAATCTACAATGACTTTACCTGTGT 28234 28 100.0 32 ............................ AAAGTATTCATCCAGGGTGTCTACATGATTTA 28174 28 100.0 32 ............................ GTGATATTAACGCTTTGCAAGCTGATAAAAAT 28114 28 100.0 32 ............................ AATTATCATCCAGAAAAGATCTTCTTTAGAAA 28054 28 100.0 33 ............................ AGATGACCAACCACCGCTTGCCAAATTTTCCAA 27993 28 100.0 33 ............................ GTTATCAACGACAGCATATTTTTGGCGGTTGTA 27932 28 100.0 33 ............................ AGTCAAATTCACCACGCCAAACACCGCCATCAT 27871 28 100.0 32 ............................ ATTAACCCTAGCTCTATCGCCGTCAATTAGCA 27811 28 100.0 32 ............................ GTCATAATGTTTCATTACTGCAAGTACTAATC 27751 28 100.0 32 ............................ TTTTAGGCAAGGCGTGAGCCTTTTAGGCAAGG 27691 28 100.0 32 ............................ CATACTCGCTCATAAGCTTCAACCCCTGCTTA 27631 28 100.0 32 ............................ TGTAGTAGAAAGTTAACTACAGAACGCTAATT 27571 28 100.0 32 ............................ TAAACTCTACTACTCTGCTATCGTGATAATAG 27511 28 100.0 32 ............................ ACTTTCAAGCCTGCACAGAAAAGTGATAATCC 27451 28 100.0 32 ............................ TTTAGTGTTATGCTCATTTAATTCCTCAAAAA 27391 28 100.0 33 ............................ GTCATACTCCCTTCTTTCCAACCAAGTATTGTC 27330 28 100.0 32 ............................ CATAACAACGGATAAAATAATCTTTGTTGTTT 27270 28 100.0 32 ............................ ATAGTCTCATATGATATTTCTTGTTTTAGTTC 27210 28 100.0 32 ............................ CCGTACTTCACAACGTATTCTTTTGCTAAAAC 27150 28 100.0 32 ............................ AGTGGAATAGCTAATGCTAAAGCGTGTTTAAC 27090 28 100.0 33 ............................ AATCTGTATAACCATACAAAGCTTGATTTTGCA 27029 28 100.0 32 ............................ AACATCCGCAAGGATTGGGCGGATTGCACAAA 26969 28 100.0 32 ............................ TTTTCATTTCATTGTCAAGAGTTTCTTCAACC 26909 28 100.0 32 ............................ TTGATCCCTAGAGATTTTGTGCATCTCCATTA 26849 28 100.0 33 ............................ AACATAACTAGTCTCCTTAAATTTCAATTAGTA 26788 28 100.0 32 ............................ TAGATACTGCATAGGATTAAATTGTTTCATGT 26728 28 100.0 32 ............................ TAAACACCTGATTCTAGAATTGTAAAGCCACC 26668 28 100.0 32 ............................ CTTGCAGGGGGCTGAAAATGCTGATATATGTT 26608 28 100.0 32 ............................ AAATCAAGCCGGTGGTGTTGATTTAGTGAGCA 26548 28 100.0 31 ............................ TTGACCCCCGCCCACTAGCCCCAGTTGTGAG 26489 28 100.0 32 ............................ ATGACAGAGAACGGTTAAGTACAACGGCAATC 26429 28 100.0 32 ............................ TTGATACACAAAACATGTCTATTGTACTTTCT 26369 28 100.0 32 ............................ TTGTATCTGTGTCAGATTTGAGTGCGTGGCTA 26309 28 100.0 32 ............................ TTTCGCAATAAGTTTGGCGAATATATCTCACT 26249 28 100.0 32 ............................ AGTATAGTGATTTTCGCCATTGACACACTGGA 26189 28 100.0 48 ............................ ACAATCAACGCCTAGCATTGGTTGATGAGTTTACCAAATTGGTTGCAA 26113 28 96.4 32 .............T.............. TTTGGTGATTACAAGCTACCGTCCGAATTTCG 26053 28 96.4 32 .............T.............. AACTCGGCAGCAATACCGCCAAGACATGTAGG 25993 28 96.4 32 .............T.............. AGCCTGAGCTTGTCGCTGATGTGCTTAATCAC 25933 28 96.4 32 .............T.............. GACGCAAAGATTGCAATCAGATAAAACAAAAA 25873 28 92.9 32 ...........TG............... TAATCTTGAACCTATTTCATAAATAAACGGCT 25813 28 100.0 33 ............................ AACTGTGTTAATCCGCTCAGACAAGCTTTGATT 25752 28 96.4 31 .............T.............. CTTACAATTTTTTTGTCAAAATGCTGCATAA 25693 28 92.9 0 .............T....T......... | ========== ====== ====== ====== ============================ ================================================ ================== 77 28 99.5 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : GTGCCTGTGCCAAGGAAAATTACTGTGGTATTGGCGATCGGAATGTTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGATATAAGATACGCCCGTCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAATGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATGATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGCAAAATAACGGATTGACCCTTTATTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATTCAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGGCTTGTTATTTCTTATTATTTTGGTTTATAATAACT # Right flank : TTTCGTTCTACAACTACGCTGATTATTTAAAATTTTTGTACCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGTAATTTATGACCGAGCAAACCACCGAACAAACCACCATGGAAGAGATTACGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCACAGCCAAATCCAAGCACTAGAAAGTGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCGTCCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //