Array 1 2214055-2208753 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008746.1 Methanosarcina barkeri CM1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2214054 37 100.0 36 ..................................... ATAATTGATTTTGATTTGAAGGAGGAAAAATGGTGA 2213981 37 100.0 37 ..................................... CACATTCTGAGCGTTTCATTAACAACCGAGTTAATAC 2213907 37 100.0 34 ..................................... CGCCCGATTAAGACGTTTTGAAGAGGCGGGACAA 2213836 37 100.0 34 ..................................... TCATACCATTTCAATTCTCGTTTTTTAGATGCTG 2213765 37 100.0 38 ..................................... GATTCTCATGCGCTGCAAGCCCAGATGAATATGATGTT 2213690 37 100.0 37 ..................................... CTTATACGGTGTTACGCATATTATGTAATACAGTAAA 2213616 37 100.0 35 ..................................... TGTATAAAATTAAAGATGATACAAAGGAAATCAAT 2213544 37 100.0 34 ..................................... AAAATATATAAATACAAAAAATACATATTACTGG 2213473 37 100.0 33 ..................................... TATTTTAGTACATAATATAAATTATACTACATT 2213403 37 100.0 36 ..................................... TACAGGAAACTGAGAAAATTCAGGAACCTAAACTAT 2213330 37 100.0 38 ..................................... GAATAGTTTTCGAAATCATTGTTTAGTAGTTCACATTC 2213255 37 100.0 37 ..................................... CAGTATTAGTGGAGTTCTCCACGGTATTATTAATCTC 2213181 37 100.0 38 ..................................... CTGTGGCAAAAGAGGGGAAGAAAGGGTATGCTGATTTT 2213106 37 100.0 37 ..................................... CGGGCAGTATAAAGGCGGTCAAGCCGGGCTCCAAATT 2213032 37 100.0 37 ..................................... CTATAGAATATATGATTCTATAGTATTTATAACTATT 2212958 37 100.0 37 ..................................... CACTGTATTTAGATCAGATGAATCAATCATGACGTAT 2212884 37 100.0 32 ..................................... TGGTCTCCTGCTTTTGCAAGTTTTTCTAATAG 2212815 37 100.0 36 ..................................... TTCAATCCAGTAATGAGTTGTCCCCAGTCTTCGAGA 2212742 37 100.0 37 ..................................... GCTATCCCCCTAAATCAAAAAAATGCAAATGGTTGGG 2212668 37 100.0 36 ..................................... CTAATAGCTGAGATGAAAAATACATATCTAGACATT 2212595 37 100.0 33 ..................................... GAAGTAGACAATACTATTATAATCGGTTCTAAT 2212525 37 100.0 39 ..................................... TGAAAGAGAATACACGATTTCTCTAATATCTCTATAATA 2212449 37 100.0 35 ..................................... GTTGTTGGGCTTTCTTGGGGAATATTCATTACAGG 2212377 37 100.0 35 ..................................... CAAAATTTACCATATATTGAATCGGATCTAACCGT 2212305 37 100.0 35 ..................................... AAACTGAATACCGGGGAATATATAGACATTTCAGT 2212233 37 100.0 36 ..................................... ATCCTTATTGGATTACTTTATTCACGGAAGTATCAA 2212160 37 100.0 34 ..................................... TAATAATAGGCTTTATGTTGCTTCTTATTGTGAG 2212089 37 100.0 35 ..................................... TATATTATGTACGAGTTCTGAGACATAAATATAGT 2212017 37 100.0 35 ..................................... TCATAAATCTGTTTTGTAGAGAAGAATTTTTCATA 2211945 37 100.0 38 ..................................... TTCCGTAAACGGCGGTAGGACCTGGGTTCCATTAACCA 2211870 37 100.0 39 ..................................... TTTCTAATATCCTTCTAAATAGTAAAAACTTTTCAAAGT 2211794 37 100.0 41 ..................................... TTCGGTCCTCCTCCAGGGCGTCATTATCTCCGAGACATCCG 2211716 37 100.0 35 ..................................... CCTTATAAACGCTTATGATATGTCCGGATCTGTAG 2211644 37 100.0 35 ..................................... CAAAGCTGTTCTATGGAGAGACTGAAGCCGCGAAG 2211572 37 100.0 37 ..................................... CTTCGAGACATTCGACCTAGCAGCGCCCGATTGCGTT 2211498 37 100.0 34 ..................................... GTGGACCATTTAGAAATAATGGAATTCCCGAGGG 2211427 37 100.0 34 ..................................... CTATACCTGTCGATATATTAACATATTACAAAAA 2211356 37 100.0 37 ..................................... CTAAAACCCCCAAGAGATACATTCTTAATATCATCCG 2211282 37 100.0 35 ..................................... ACTTAAATGATGCTATGATTAGCCGAATGGATCTT 2211210 37 100.0 36 ..................................... TAAAAATGAGATCCGGCACATTTCACGACTCATTTT 2211137 37 100.0 36 ..................................... GTTTTCTGCGTTCAATTGTATTTCGTTCAGTCATTT 2211064 37 100.0 37 ..................................... CATCTCCACTATCTAGCCTAATCTCAACAGGATAATT 2210990 37 100.0 37 ..................................... ATTATAAAAACACACTGAAAATAATAAATATATACAT 2210916 37 100.0 35 ..................................... CAAAAATATGACTCCAGAATCTACGACTTCAACAA 2210844 37 100.0 36 ..................................... ACTTTTTATATTACCTCTTCTATAATAACAAGTATG 2210771 37 100.0 37 ..................................... CCCTAGCTTTCTGTTGAATTGATGTTCCAGGAGGCAG 2210697 37 100.0 36 ..................................... TTTTATTGTGTATTATATATTACGCATGATACATTA 2210624 37 100.0 37 ..................................... ATGATTACAGCGGATTTTGAGATCTCTTCTATAAAGA 2210550 37 100.0 38 ..................................... TGCATTTGATACATCACATTGGAGCGCAGGTGGACCAG 2210475 37 100.0 38 ..................................... AACGGTTCAGCCATGTAATTCAGCTCCAAAAATTAAAA 2210400 37 100.0 36 ..................................... ATAATGTCTCTCGAATCTGAATTAGATCATCTTATG 2210327 37 100.0 41 ..................................... ATTTCTGAATGTCTTCAGGAGTGCCCCAACAAGGCCGCTGT 2210249 37 100.0 34 ..................................... TGGTAGCGGAGCGTGGATATATCTATAAAAAGGT 2210178 37 100.0 36 ..................................... AGTGTTAATTGTTTCACGAAGTGCTCTTTTGCAAAA 2210105 37 100.0 35 ..................................... AAGATTAGATATACATTTGGATTTCCTGGGATTGC 2210033 37 100.0 38 ..................................... CACCCTCCCCTTAAAAATTTGATAGAATTTTATAAAAA 2209958 37 100.0 34 ..................................... CATCGGTGAGTACATCAATGATATTGTTTAACTG 2209887 37 100.0 36 ..................................... ACCAAAGTTCCAGAATGCGCCTTTTTTCATCTCCAG 2209814 37 100.0 34 ..................................... ATACATGACTGCAAATGTAACTATTGTTTAACTG 2209743 37 100.0 35 ..................................... AAATAATGCGTATCGTAAGCCCGAGCGACCTTTTT 2209671 37 100.0 34 ..................................... AAATCAATATCAATCAATTGCATTATCACATATT 2209600 37 100.0 35 ..................................... CTAAGTAATGAATAAAACAAAAAAACGAAACTGAT 2209528 37 100.0 36 ..................................... GAGACCAGGATGCAGACTTTCCCAACACCGGCCCTA 2209455 37 100.0 36 ..................................... ATATTCTCTAAAGGGATGTCGATTCTACGTCTAGGC 2209382 37 100.0 38 ..................................... TCCCAGAGTATACACTTGATGTAGTAAAGGAAGCACTA 2209307 37 100.0 34 ..................................... CTGACACTGTCACGGCTGCCCTATGGCAAGGCAG 2209236 37 100.0 38 ..................................... ATAGATCTTTATATTCAACGCAAAATTCTAGATTATGA 2209161 37 100.0 35 ..................................... TTATAATAAAGAACGTATGGGCACGAGTCTATTAT 2209089 37 100.0 36 ..................................... AATACTAATTTTTTCTGTCCGTTTGAGGCAGATACT 2209016 37 100.0 36 ..................................... CCTGAAGGAGTCAAACCGAAAGCTGTACCCTCTGAG 2208943 37 100.0 37 ..................................... AAAATTAGAGGAGTCTGTTTTATAATGAATATCAGAT 2208869 37 100.0 43 ..................................... ACCAAAATTACCAAATAACACAAAAAAGTAATCGGGCGACAAA 2208789 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 73 37 100.0 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : GAGAGAGACGTATTCATTGCTTCAAAACAGCATCATATAAAGGGAATAGTAGATGAAGTACTTTTTCTTGAAGACGGGACTGCTGCTCCTCTTGAATATAAATTTGCTGAGTATAAAGACAAGATTTTTAAAACCTATAAGTTTCAGCTGGTTTTGCAGGCTCTTTTGATCCGGGAAAACTATAATATTGAAGTAAACCGTGCTTATATCTGTTTCACCAGAAGCAACAGTCTGGTTAAAGAAATGAAAATTACTACTTCTGATTTCAAAAAAGCTGAGAAAATTATTGGGGAAATACTCGATATCGTTCAAAAAGGCTTATATCCCAAAACTACCAAATCATCTAGAAAATGCGTAGATTGCTGTTACAGGAATATCTGCGTATGAAGAGATTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCAAAAAAGGGCTCATTTCAGGGCTTTTCTAGCCAAATAACGGAAAATTTTGCCCT # Right flank : TAAAAGAACCAAGGTGCTTCTCACTAAAGTCTCGAACTCGGTATTAATTCCCGGACACTAAAGTGTATATCATTTCTCTAGCCGCTAGCCGTTTGGCCCTCTGCTTTTTTCCTGCCTGTCCGGTGCTGGTTGAGGAGCCAAAGGTGCAGGTACAGGTGAAAATAGGTTTGCAGGTAGGCCCTTCCGCCTTAAACGAATAAGCCGGTAAGGGAAGTTTCTTTGCCTGACAATATTCCTGCAAGGCAAAAATAGGGTCTTTTGACATGTTAATCGTCACTTCTTCATTACTGGCCGGCAAATCTATTATCTTGGTCTTCAAGTCTGGAACTGGTAAGCCCAGGACAGCAGCTAGCAGGTCTACGGATGCCCGCTGAGTCGCTCCTTTCTTTGTCAAGTCCTCGTATACGGCAGACCGGTACTCTATATTATTTACTCTGATAGCGCTCTGGGCAGCGAATACCGGTAAGTTACCACGAATCGTGTTGGTCACTTTGTATACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 2 2376808-2378788 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008746.1 Methanosarcina barkeri CM1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2376808 29 100.0 32 ............................. ACGTTGCCCCGCTGGATTTAGGAGCATAACTG 2376869 29 100.0 32 ............................. CTGTTGACAGCAAAGACACTGGAGTAATTGAT 2376930 29 100.0 32 ............................. TATTTTTGAAATTTCTACAACTTTATTAGACA 2376991 29 100.0 32 ............................. TGATTCCGTTGAAATCTTCTTTGAGGTCATCA 2377052 29 100.0 32 ............................. GCATATCTTTTATTTTGCCGTCCTAAATTGAT 2377113 29 100.0 32 ............................. CTTTGAACAACTTGTTAATGGCAGAGCCTGAA 2377174 29 100.0 32 ............................. ATTTTTACTGCAGTTTCTATTTCAAACGTTCC 2377235 29 100.0 32 ............................. TTACCGGTGTTAAAACTGTTGTTATCGAAGAT 2377296 29 100.0 32 ............................. ATATTATTTTTAACATTTATTCGCATACCACT 2377357 29 100.0 32 ............................. GTGGAGAATTGTTTATAAAACGTGCATTAAAT 2377418 29 100.0 32 ............................. TTAATTCTTGTATGAGTAATAAAAGATAAATT 2377479 29 100.0 32 ............................. TTGATGCATTGCTCAAAAGTTGGCCATCGAAG 2377540 29 100.0 32 ............................. GTAGTGTAGACCATGACCAGGTTCCTAAGTAT 2377601 29 100.0 32 ............................. GCGAAATCATGAAAATAATACTTCCTTCCAAT 2377662 29 100.0 32 ............................. ATCGATGAGCTACGCCATCATAGAGTAAAATT 2377723 29 100.0 32 ............................. ACTGCAACAGATAGGGGGACTTGCAGATCTAT 2377784 29 100.0 32 ............................. TACATAGAATAAAGGAGGAGTCAAAATGACAA 2377845 29 100.0 32 ............................. TTGACTGCTGAACAGAGAGAGGTTTATGAAAC 2377906 29 100.0 32 ............................. CTCTAGAAATTCCGGATTTTGATATTAGTGCT 2377967 29 100.0 32 ............................. CTATTTTGGAAATGTGACTGAGGAAAATGAAA 2378028 29 100.0 32 ............................. TTATTTATTATAATATTAGTGGATTGGATATT 2378089 29 96.6 32 ............................T TTCCTCATTACAAGATATCTGCCCATTCTCTA 2378150 29 96.6 32 ............................T TTCCTCATTACAAGATATCTGCCCATTCTCTA 2378211 29 100.0 32 ............................. CAGTATAACCCATCTCCTCAGCAGCTGCTTTA 2378272 29 100.0 32 ............................. GTACTTCACATAATGTTATACTGTTTTTTAAC 2378333 29 100.0 32 ............................. TGATGAGGACACCGCGTTAGCATCTGAAAATA 2378394 29 100.0 32 ............................. AACCCCGTGAACGTTCCATCGTACTCTGATAT 2378455 29 100.0 32 ............................. CAGTATCAGGGATGAATAATACATCTCTAGGT 2378516 29 100.0 32 ............................. GTTTCACCGTCTGCAAATATATCTGATTCACT 2378577 29 100.0 32 ............................. CTTATGCAATGGCGCGTGGAAAAATAACACAA 2378638 29 100.0 32 ............................. CCTAGAATCTGAATTTCAAAATTGTCTTACAA 2378699 29 100.0 32 ............................. ATATCAGCCTCATGATTACCTGTTCTGATGAA 2378760 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.8 32 GAGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : TGCAGGTGCTCTTCCTATTCCTGAAAAGCCTCCGGAATCCCTTCCTCCTGCAATTCCAAATGAAAGGGGACTTAATGATGTTGGTCATCGTCCTTGAAAAGACAACACCTCGACTAAGAGGAAGATTGACTCTCTGGCTTCTGGAAATTAGGGCTGGAGTATATGTAGGAGATTATTCGGTCAAGGTAAGGGACATGATATGGGAGAATGTGAAAGCCGAATTCAATGATGGAAATATTGAAGGAAGCGCCATTATGATCTGGTCCGCAAGAAATGAAATAGGATTCGATTTCAAAGTTCTCGGCGAAAACCGCAGAATTCCAAGAGAAATGGATGGAATAAAGTTAATATCCTTCATGCCCGAAACTAAAGTAGAAGAGTAAATTAACCGGAGATATTATGTTTTTGAAATATTATATTTTTTATATAAAATACATTATAAAAAACGTTGTATATAGTAGCGGAAAAGTTTTTCCGACAAATAGTATAAAAGACAAACA # Right flank : GTTAATGTAAGATGAGTCGCGCGGATTAAGGGAGAGTTCCCCACACATTTACTGTGATCTCACTTTAATAGGTGTTAGTACTATTGGTTTTCCTCTCAATGTCTTAACATAATATTAATAATTAAATGCAGTAGTTATTATCAAAATACTGTATTTTTCATATTATCTCAAGGGACATTCACCAATACAAATTTTAGTCAAACAATAATAAAGTATTTTTATGAAAAACAACTGTATAATAATAAATGAAAGAAAAGTATCCGGTTTCAGGATTTACAAGGGACAAAGAAGCCATTTATGTAAATGGAATCCGTATCTTTGTTCCTGTAGAATATGATAAGTTTAAGGCAGGAATTCCAAAAAAGAGACATAAAACTCTTTTTGAGCTATCAACAATCACTGGCATGAGGTATGCTGAAATTCAAAGGCTATACGATCATCCTGAATGGTACTCTGAGAGCAGGAACCAAATTCGTCTTAATGAAGATGCACAGAAGAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCACAAGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3096254-3100230 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008746.1 Methanosarcina barkeri CM1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================================================== ================== 3096254 37 100.0 37 ..................................... ATCCAATGCAATGACTTGTGCAAACATTTCCATTAGA 3096328 37 100.0 35 ..................................... AGAAGACTACTCGTGTGGAAGCATCTGTCACTATT 3096400 37 100.0 35 ..................................... TCTTTCAAATCTTGCACTCTTCGGGATATTGCCAT 3096472 37 100.0 37 ..................................... CTAAATGAAAAGCAATGGAATACATAGTGTAATTACA 3096546 37 100.0 38 ..................................... GATATGCGGGATTAGTTTCTTTCTTACTGATTTGTATT 3096621 37 100.0 37 ..................................... AATAGATCAGATACGTTTCCGGCAGCGGTTTTTAAAT 3096695 37 100.0 35 ..................................... CTATACAAAAGTATTTATTTTTTAACGTATATTTT 3096767 37 100.0 36 ..................................... CGCGGGAGGTCCGTTTTACCTTTCTAATTCGAGTGT 3096840 37 100.0 38 ..................................... TTATATGATATGTCACCTATTGGAATACCCATTGTTTC 3096915 37 100.0 35 ..................................... TAAGTGCCTGTGAGGTACTGACTCCATATGTATCT 3096987 37 100.0 37 ..................................... CAACCTACAAAAAAGGGCAAATTTTTGAATGCACTGA 3097061 37 100.0 36 ..................................... CTAACCATTCTTCATCACTGAATTTTACTTTGCACT 3097134 37 100.0 36 ..................................... AATAGTATACCCTCCTATATTTCTTTAAAACGTTTC 3097207 37 100.0 36 ..................................... ATCGACTCGACCATGATATACGATTATAACATAGAA 3097280 37 100.0 35 ..................................... TTCACCGAAGAACCGCAGGCCCCGTTAGGAACCCA 3097352 37 100.0 34 ..................................... CCTTTCTTTGGGGCCTTGCTCTTTGGGTCGTCCT 3097423 37 100.0 41 ..................................... TGCTGCCTTCCGTAGTCGTGCAGAATGCGTTTTCCAGTGTG 3097501 37 100.0 37 ..................................... ACCTGGGTGGTCAACCCTTCAATAATAATAATAGATT 3097575 37 100.0 36 ..................................... CAGCAACCCCGAAAGGATTTGTGCCAACTGTTACAG 3097648 37 100.0 37 ..................................... ATACATATGCTGCAAGTCCGGACGCTGCAACAGGCTT 3097722 37 100.0 41 ..................................... CAAGTGCCATTGACGGGATAGTAGGGCAGTTTGAAAGGCTT 3097800 37 100.0 35 ..................................... AAATAAATGCGCCCTATGCTGGGGAGTTCGCAAAC 3097872 37 100.0 40 ..................................... CCATAGCTTTAGAAGCAGAGTTTAAGGTTTTGAGATGTAA 3097949 37 100.0 36 ..................................... ATTTTTGAAGAGTTTCCTGATCTTCATCACGGATTA 3098022 37 100.0 36 ..................................... CATATTAATTGAGGTTGTACATTTCGGACACATGCC 3098095 37 100.0 33 ..................................... ACCAAGCTTCACCATCATAAACAGCAATAACTG 3098165 37 100.0 35 ..................................... ATATGTTAGTAAGCGTGTGAAACAAGGCAACGAAA 3098237 37 100.0 37 ..................................... CTACATGCAATCACATGGTCTAGAGTCCATTCCCAAA 3098311 37 100.0 38 ..................................... TCTTGATGTATAAGATAAACCATTTTTTCATAAGTTAG 3098386 37 100.0 35 ..................................... CTAGATCGGGACCTAGAAATACTATGTACGCATTG 3098458 37 100.0 38 ..................................... ATCTATAATCTATATGATATTTTTCTCCAGGTTCTATG 3098533 37 100.0 36 ..................................... TATAATAATTACCATATTGACCTTTCACAAGATTGT 3098606 37 100.0 38 ..................................... CCAGATGAGTTTTTTGAAAATATAACCCCCGTGTTTGG 3098681 37 100.0 36 ..................................... ATCGTAGACTTCAAGCTATCACATGGGATGTTGAAA 3098754 37 100.0 40 ..................................... ATGGAATTAAACCGTTTCCTGTTTCATATGAATTAGAATC 3098831 37 100.0 36 ..................................... ACATAATTCACAGCTTTGTCAATTTCGGATCCTTTT 3098904 37 100.0 35 ..................................... TAAACACCAACCACATTTTTATTACTGTATCTTTC 3098976 37 100.0 35 ..................................... TTTTATAGCGTATTATATACAATAAATAATACATT 3099048 37 100.0 43 ..................................... TTGATTTACATAGACCGTTGCCAACAATAAACTATAGAATCAA 3099128 37 100.0 36 ..................................... TTATTAATACAAATCTATTTGTTGTATTCATCAATA 3099201 37 100.0 37 ..................................... TACAAGCGCATTTACAGGTGCGCAAATCGATGAAGTT 3099275 37 100.0 37 ..................................... TTGTTTCAATGTCTAACATCGTGCCTGCCCTCCGTGT 3099349 37 100.0 33 ..................................... GTGCTTGAGCCGCATAAAACCGGCTACCCTCAT 3099419 37 100.0 35 ..................................... AAAATTAAAAGCGGAGATGGAGATTTTATTTCATC 3099491 37 100.0 36 ..................................... TACATACTTTATCAAGCATTTGTGATACGTTTTCAA 3099564 37 100.0 36 ..................................... GTAGGAAGTGGCGTTAAAGCCGCCACGATGTTTAGA 3099637 37 100.0 35 ..................................... TGAATTTGAGCCTGACCTCTCCCTCCCTGGCTTCT 3099709 37 100.0 37 ..................................... TTTCTAAGACTCTTCAGGTATATGGATATAGAAAAAT 3099783 37 100.0 35 ..................................... AAGTTCTTATAGATCTTAATATTCGTGCTTGGCAA 3099855 37 100.0 36 ..................................... CCTAATGTTTTGCCACGGACATTCAAAATGGTTGGA 3099928 37 100.0 38 ..................................... AGTTTTGCCAGTACTGCAGTCTTGAGCTCGTTAAACCT 3100003 37 100.0 38 ..................................... ACAGGGCGTCCTCTTGGAAAGCTCATGATAGGTCACGT 3100078 37 97.3 75 ..................T.................. ATACAGCTTTTGGGCATACATTCTCAGAAAACTCGATTCGTGAGCAATGCTTTTTAAGTAAGTTGTGTATATACT 3100190 37 91.9 0 .....C............A.....A............ | G,AAA [3100216,3100219] ========== ====== ====== ====== ===================================== =========================================================================== ================== 54 37 99.8 37 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : ACCTACCAGTAGTGTTTTCAGTAATCTCAGATCAATTAAATAACACGATATAGAGAAAATATAACAATATAGTAATATTTTTTTGATAAAAATTAAGATGAATTAGACTACACTCGTTTTGTTATAAATACATTCCTAAATATATGTGATACAAATATGTTAATTTTATAAAATTAAATAATACAAAATATTATTTTTATTCGTTTGTTAGTTTTGGATTGAATTCAGTATCTGGATGAAGAAAAATAGTTTAAACTTGGTGTTTTTAAAAAATAACAAAAACATTATTGAATTAGGCCGGCTTTTGAATTTATTTAAGACGACTTAAAATACAAAAGTTAAATAGAAAGAAAGGCATATACCAGAATGTTTCCAAACTGCTAGAAACCCTGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTCAACCCCAAAAAAGGACTCATTTCAGGCCTTTTCTAGCCAAATAACGGAAATTTTTGCCCT # Right flank : CTTTTATATTTTTGCGAAGTATATCAGGCGATGAAAATGCTAGATTTCCTTAAAAATTTATTTGGTAGTAAAAATAATAATAATAAAACCCAAATAAGTAAGCCAAAATATGTTAAGGCGTTTGGAGATAGAGTTATACACTGTAACATGGCTCGCATATTTACCGGAAAAGTAACAAGTGTAGGTAACTGGGGTAATGATTACGAGAGAAATTATAGGTATAATGTAATATCGGGTAAAGTTAAAATTAGAAAGTTAAAAGCTATAACATTACATAGGAGCTGGGGTGGCACAATTAAGTTTTTTATGTTTTATCCTGTTACTGGATATGCAGAAATAGAAGCCAACGGTACAAGAATTATGTTACACAAATATAATGGATACGGAAAAAAGATGATTTATAAGCAGAAATTAAGATTATGATTTTTACTTTTACTAAGTAAGACACTTTTATAGTAATAGTTATCAGTTTGTGAATATATCTATTTTCAATATAGAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 4 3105266-3106401 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP008746.1 Methanosarcina barkeri CM1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3105266 37 100.0 38 ..................................... TTCTTTTTGTTTTATTTTCCTCCAATTCAGTTTGGTGG 3105341 37 100.0 37 ..................................... TTGTTTGGCTCTTTGTTTTCTCTGGTGCACTGAATAC 3105415 37 100.0 36 ..................................... TCACTTTGACCTCTTTAAATATTTTTTATTTCTATT 3105488 37 100.0 37 ..................................... TTGGTTTTATCCAGATTCCACGAGAGATATTCGCCTG 3105562 37 100.0 39 ..................................... CTCGACAAGCGTGAATATCGTTTTCAAAGCTTTTTGTTT 3105638 37 100.0 34 ..................................... CATATTCTAGTCTCCCTATATCCTCTATAGTTCC 3105709 37 100.0 34 ..................................... ATTATCCATCCTCCCGAGCCGTCCATTGTAAAGG 3105780 37 100.0 36 ..................................... TTCAGTTTCCGACAGAATTTCCATCTTGGCAAAACG 3105853 37 100.0 38 ..................................... CTTCTATCTTTTTAATAAAATTCTCCGTTGCTCATTCC 3105928 37 100.0 37 ..................................... TATTTACCTTTACTTATATAGACTAAAAGTATTATCA 3106002 37 100.0 37 ..................................... TTTAATTGTTTACGTTTACGGTAACACCTCCTTTTTT 3106076 37 100.0 35 ..................................... TAGCATAATCTGAATCCCATGCTATCGGTCTATAA 3106148 37 97.3 35 ................................T.... TAGCATAATCTGAATCCCATGCTATCGGTCTATAA 3106220 37 100.0 36 ..................................... TATCTAAGATATTTCTAGATATTTTTCTTTCTCTTT 3106293 37 100.0 35 ..................................... AACTTCATCTTAGTCTTTTGGTTTGCCATTTACAA 3106365 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 16 37 99.8 36 GTCGAGAAGTAGACTCCACGAAAACAAGGATTGAAAC # Left flank : TTATCCGAATTCTGGAAGTAAATCCCCCCGTTTTCCTCATAAATCACGCTTTTCCTCAACTTTACAAACTAATTTTATATAAAACAATATCAAGAGAGACAGTATAAATTATTGTTTTGAATTGTCTAAAAAGAAGTTCCAATTTTCGCTTTCGATCCAAAAATTAAAAATCACATTATAAAGGCAGAGTAAAACATTTTGATAAAATATTAGACTTGCTGCTCACCCCTTACTTTTTTAATAATTTCTTTGTAATGACCATGTTTGTTCATTATTAAAAAACTAATATCAATACAGGACGATTGAAAATAAAAAAGTTTATATATTGCTGCTCCTTATATACTATTTAGTTATTTGTCGACCAGCAAATTCTGTTGACCAAAACAAAAACAGGTAAATTTCAAGAATTATATAGTTCAAACAAAAAACAATTTGCTTGATATTGATTTTTAAATCAGAGATCATCTTTGAATTTGCTGAATATAAGGGAAAACGACCCT # Right flank : CAAAGTTTCGAACTTGCAACAAATTTCAAAAGCTTTTTAATAGGTAAATTCTTTTTATATGAAAGCTTCAAGAGAATTTTTGCTGGTTTATATGAAACTGAAAACTCTGGAAATGACCTTCAGGTCCACGAAAAAGTTCAAAGAAAATATCCTCTGCACCCGCGGCTTTTTTGCAACAAAATTCAATGAATATGTCCAGCTCCACAACCATATCACAGACAAGCTTGTGTACAGCTACCCTACAATCCAGTATAAAGTTGTCAGAAACAGGCCCCTCATTTTGGGTATTAATGAAGGAATCGATGTTTTGAAAGAGATTTTTGATGACTTTGATACGGTAAGACTTGGAGAAACTGAATATGAGATCATCCAGAGGTCCATGACAATCAAAAAACAGGAATTTGGGCTTTCAGATAAGATTTATTTCTACGAATTTCTCACTCCCTGGCTACCTTTTAACAAGGAAAACCACGATAAGTTTGTGCAGATAAAAAGTAGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGAAGTAGACTCCACGAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //