Array 1 40293-42968 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINRM010000005.1 Ligilactobacillus salivarius strain AER04 contig00005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 40293 36 100.0 30 .................................... TTACGACCAAGAACAACATTAGTTGATAAG 40359 36 100.0 30 .................................... GATAATGATTTGATTTTCAGGGGGAGAGCC 40425 36 100.0 30 .................................... CCTCGTGAACAATCATTGCGTCGTCTTTCC 40491 36 100.0 30 .................................... CTATTGCACCTCTAATGGATGCGATGAAAA 40557 36 100.0 30 .................................... TCTTCATCTTCTTTTGTCATGCAATCGCCC 40623 36 100.0 30 .................................... TTGTATTTGATGATGTGATCCTAACCCTAG 40689 36 100.0 30 .................................... CAATAACATCTGAAGTCTTCGATAGTGCAG 40755 36 100.0 30 .................................... TTAAATTTGCCTGTAACTGTTGTATTTAAA 40821 36 100.0 30 .................................... ACCCATTTTTTCTGAACAAGATCATAAACT 40887 36 100.0 30 .................................... TTTTAAAACACAAGCAAAAGGAAACTATCA 40953 36 100.0 30 .................................... AAAGTTAAAGCCACAGTACATCTATTCTTA 41019 36 100.0 30 .................................... CAACAGATACGGCCAATTGTTCGCATTCTG 41085 36 100.0 30 .................................... TGGAAGAACGCACACATAGGAATAGACTTA 41151 36 100.0 30 .................................... TCATTCAATGGGCTGAAGATAGAAATATGA 41217 36 100.0 30 .................................... CCATCTATCTTTACAGATCTAAGTTCCACT 41283 36 100.0 30 .................................... ATAACATCATTTTAACCATCCAATCAGGAG 41349 36 100.0 30 .................................... GCGACTACAACGGCAAATGGAACTTGAGTG 41415 36 100.0 30 .................................... GCGACTACAACGGCAAATGGAACTTGAGTG 41481 36 100.0 30 .................................... TAAATTTTCTGTTTGAAGAAGATATACCTT 41547 36 100.0 30 .................................... TAACAACCGGTAGCGTTTGTACTGAACTAA 41613 36 100.0 30 .................................... ATTCATGGCTTTATGATCATGGAGAACCGT 41679 36 100.0 30 .................................... ATTGTTCTGGCAAAGCCAAGCCCTCATCTT 41745 36 100.0 30 .................................... CCAAGATGGAACAGAACCAAAACCAACTGA 41811 36 100.0 30 .................................... CGCTCCTATAATCCTTTATACTGTCTTTGA 41877 36 100.0 30 .................................... CCAATTGTTTTCACCATACCAGCAGATACG 41943 36 100.0 30 .................................... ACGAATTAGGAACATCTGAAGATATAGCTA 42009 36 100.0 30 .................................... GAATACGAACCTTTTTGCTAAGCTTTTTGG 42075 36 100.0 30 .................................... TAGGACGTCATGCCTTCGTTTCTAACACGA 42141 36 100.0 30 .................................... TTACAACCGGTAGTGTTTGTACTGAACCTA 42207 36 100.0 30 .................................... CCCTTGCTCTTAGCTGCTGCAGCAAGCCTT 42273 36 100.0 30 .................................... AAAGGAATTGAAAAATTATGAAGAGAGAAA 42339 36 100.0 30 .................................... TAATCAAGAGTCCGGAGGCAATGAACACGC 42405 36 100.0 30 .................................... CGATACTGATCGCATAAGTCGATATAACCG 42471 36 100.0 30 .................................... TTGGGGAGGGCTAGGGTATGGCACGTAGGA 42537 36 100.0 30 .................................... ATTCTTTTTTAATTTGTTCTAGTTTCATAA 42603 36 100.0 30 .................................... AGTGAATATACATAAGCTACTGGAGCAACT 42669 36 100.0 30 .................................... GACGGATCATAAAACGCCTTTTTATCTCCG 42735 36 100.0 30 .................................... AAGGGTTATCAAGAACATGTACAAAATCAA 42801 36 97.2 30 ........................T........... ACTACCTATTACTTTCAAACGTTGTCCTGG 42867 36 94.4 30 ........................T..........T GATCTACGTTACATTTTCTTAATGTTCACA 42933 36 80.6 0 ......T...A.........T....G...CG..G.. | ========== ====== ====== ====== ==================================== ============================== ================== 41 36 99.3 30 GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC # Left flank : AACAGACCGAATTGGTAAAAAATATATGAACATATTGATTAAGAAGATTATCGAAAATCTTACAGACGATGAAAGACAGGCAATACTAAAATCAGTAAATAGTTTGTATGATAGGATTCGAGAAGTTTTGTATAAAATTGATATACCCTTACAAGTAGATTATGACAATGATTTGACAAGACTATTCAAGTACTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCATATGATAGAATATCTTCAGATGTTAAATTACATGTGGAATTAAATAGAAAAAGAATTATAGGTCTAACCAACGTCGCGCATTATCTTACAGAAGGAGAATTTCAAGAACTTGTAAGTCTTGTTAAGATGACTAATTCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATGTTGATTGGTACTGATAAATTGTTAAATTTTAATTATAAATTAATA # Right flank : CTAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGGGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATAAGATATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTATTAGATGGTTTAGTATTAGCACTATTAGATAAGCAAGATTATTATGGATACTCATTGACACAAGATATGCAAAGAGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGCAGGTTAAAGAATAATGGCTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAAGTTAGTTTAGATTCAATTTTCGAAAAAAATAGAGAGGGGGAATAATAATGAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATAAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //