Array 1 110118-110267 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRID01000001.1 Acinetobacter baumannii strain Abau446 446_S83_R1__paired__contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 110118 30 100.0 30 .............................. ATCAAAGGCTTTGAGGGTAAGCGCCTTTGG 110178 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 110238 30 93.3 0 ............................NN | ========== ====== ====== ====== ============================== ============================== ================== 3 30 96.7 30 GTTCATGGCGGCATACGCCATTTAGAAATC # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACGCCATTTAGAAAATATATTTTACGTGTTGATTCAACTACGGGTGGTTCATGGCGGCATACGCCATTTAGAAATTTGGGGTAACTGGTGCCTTTAAGTTGTTTTGGTTCATGGCGGCATACGCCATTTAGAAATTCCAAAGTCTTGTTCAATATCTTGTTGTTGAGTTCATGGCGGCATACGCCATTTAGAAATTGCTCATCAATACAGCTACAAGAAAATTTGTGTTCATGGCGGCATACGCCATTTAGAAAAGCATAAGCATAAAAATTATGTGTGAATATCAGTTCATGGCGGCATACGCCATTTAGAAAAATATGCAACAATAGGAAATTGCTCAGCATCTGTTCATGGCGGCATACGCCATTTAGAAAAGTTACATCATTGCTTTTAGTCTTTTCTATCTGTTCATGGCGGCAT # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 110393-112996 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRID01000001.1 Acinetobacter baumannii strain Abau446 446_S83_R1__paired__contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================================== ================== 110393 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 110453 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 110513 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 110573 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 110633 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 110693 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 110753 30 63.3 69 ...................NNNNNNNNNNN NNNNNNNNNNNNNNNNNNGGCATACGCCATTTAGAAATCATGATCATAGCCCTTATAGATATCGTATTT 110852 30 96.7 30 ............................C. GCGAAAGCGGGGTTTTTTATTGCCTGAAAT 110912 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 110972 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 111032 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 111092 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 111152 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 111212 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 111272 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 111332 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 111392 30 60.0 88 ..................NNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATACGCCATTTAGAAAATACATGCCCACGTTGAAAATCGGGTACCAGT 111510 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 111570 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 111630 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 111690 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 111750 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 111810 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 111870 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 111930 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 111990 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 112050 30 96.7 30 .................T............ CTCATCGTGAAGGTTTTGCAAATATGCCTT 112110 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 112170 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 112230 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 112290 30 56.7 46 ................NNNNNNNNNNNCA. ACGCCATTTAGAAACAACTAAAAGCTATTTATGGGGGTAAAAATTT 112366 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 112426 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 112487 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 112547 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 112607 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 112667 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 112727 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 112787 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 112847 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 112907 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 112967 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== ======================================================================================== ================== 42 30 92.5 33 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : TTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATAGTTCATGGCGGCATACGCCATTTAGAAATCATCAAAGGCTTTGAGGGTAAGCGCCTTTGGGTTCATGGCGGCATACGCCATTTAGAAATGTTGCGCTGTTTTTGAACGTGTAATTGGATAGTTCATGGCGGCATACGCCATTTAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACGCCATTTAGAAAATATATTTTACGTGTTGATTCAACTACGGGTG # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.14, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-32] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //